LOC103024548


Basic Information

Item Value
gene id LOC103024548
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 6713456 ~ 6722276 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007230053.3
CCCCCGCTCACCTGAGTGCTTACACCTTTGCAGAGCAACCACAGTGTCACACAtagacacatacatacacacacacacacactcactcagacacTCAGACACTCACAGGATTATTATGGCCTCCTCAGTGACTGGTAGTGGGCTGCCCAGCGGAGGCAAGGTGTTCAGCACCCTGCCGGACCTCTTCTTCATACCAGAGTTCATATTTGGCGGCTTGGTGTGGACTCTGGTCGCTTCCACACGGGTGTTATTCACAAATCCTCTAGGCTGGGTGATGTTCGTGTCTGTCTTCTGCTTCGTCTTCACCACTATCTGGTTCTTCATTTTCATCGCTGGTGGGAACCAAAGTGGCATTTGGCCTGCCCTGGACGCTGCGTATCATTTTATTGCGGTGGTCTTCTACTTGAGTGCATCCGTACTTTTAGCATATATTACACTCAACATTAAGACAGCCGCTTCCCTAAGTTCTGAAGTCTTTAAGATCTATCAAGAAAGCATCGCTGCTGTGGTGATGGCCTTCATGGCCACCCTGCTGTACTTCATCCACGCCATCATGTCCGCTATCCGGTGGAAATCCTCCTGAACGCAATGAGCTCTGTGCCAGAAcaacaagccaaaaaaaaaaaaaacataaaaaacaaaacgtGCCATCTCCAGCTCTAACTTTAAAGACAATCTggcaaaagattttttttttcttaaaaccacacccacacccacacaaacacacacacctggcaACCATGTCCATGTTAGTAATAGCCCAAGTCCAACCTGATCATTTATACCTGCACTACCTGGACCAAAAGCAACAAACCCCAGAGCCGACATCTGTACTGAGAACCAGAGATCGGAGACTTCAGCATCTTCTCGAACATCTCAGATGTTACTGCTCTCTGACTGAAAGTGTACAGATGCAGCGTGTggattgatgttttatttttttctacatactTTCAGTTGTATTATGACTGTTTGGAGTTTACAGGACTCTTGGTcctgtaaatatgtttttggctttttttcatttcaacTTAGactagatataaaaaaaaaaaaaaaattatatgtgtTCAAATTAAACCACTGGTGTTTTTGTATGTCCAATCGGGAGTGACTAAAggatgaataaatatattttatacattta

Function

GO:

id name namespace
GO:0036344 platelet morphogenesis biological_process
GO:0030220 platelet formation biological_process

KEGG:

id description
ko04512 ECM-receptor interaction

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007230053.3 True 1150 mRNA 0.43 4 6713456 6722276

Neighbor

gene id symbol gene type direction distance location
LOC103024242 LOC108430197 coding downstream 5495 6689304 ~ 6707961 (-)
luzp1 luzp1 coding downstream 1450460 5210729 ~ 5262996 (-)
togaram1 NA coding downstream 2035046 4666571 ~ 4678410 (-)
fancm NA coding downstream 2047969 4624101 ~ 4665487 (-)
slc25a47 NA coding downstream 2096662 4613712 ~ 4616794 (-)
nphp1 nphp1 coding upstream 26842 6749118 ~ 6768199 (-)
LOC103025187 crip3,LOC107583529,LOC107744353,LOC107553273,LOC107717123,LOC107663266 coding upstream 172652 6894928 ~ 6924055 (-)
acss1 NA coding upstream 207494 6929770 ~ 6963428 (-)
LOC103026718 kcnh1a,LOC108433307,LOC107721370,LOC107659257 coding upstream 368769 7091045 ~ 7193590 (-)
LOC111193180 NA coding upstream 554124 7276400 ~ 7277784 (-)
G78448 NA non-coding downstream 3348 6709239 ~ 6710108 (-)
G78447 NA non-coding downstream 4625 6708531 ~ 6708831 (-)
G78435 mrps5 non-coding downstream 30361 6629689 ~ 6683095 (-)
G78442 NA non-coding downstream 39185 6673803 ~ 6674271 (-)
G78436 NA non-coding downstream 69769 6642636 ~ 6643687 (-)
G78453 NA non-coding upstream 4370 6726646 ~ 6726854 (-)
G78455 NA non-coding upstream 7563 6729839 ~ 6730061 (-)
G78463 NA non-coding upstream 22689 6744965 ~ 6745556 (-)
G78464 NA non-coding upstream 23802 6746078 ~ 6747782 (-)
G78450 NA non-coding upstream 25683 6747959 ~ 6748415 (-)
G78297 kdm1a other downstream 1527098 5184792 ~ 5186358 (-)
G78083 NA other downstream 2507072 4045434 ~ 4206384 (-)
G78023 scfd1 other downstream 2872886 3834562 ~ 3840570 (-)
prkd1 prkd1,LOC107590910,LOC107719483,LOC107733145 other downstream 2999099 3645097 ~ 3714357 (-)
G77892 NA other downstream 3364467 3297582 ~ 3348989 (-)
LOC111193177 kcnh1,LOC108433307,LOC106904951,LOC103476431,LOC102309410,LOC103370850,LOC103137420,LOC101155792 other upstream 476633 7198909 ~ 7220854 (-)
LOC111193183 NA other upstream 1754121 8476397 ~ 8517648 (-)
spdya spdya other upstream 1910370 8632646 ~ 8641832 (-)
LOC111193185 stac,LOC107715935,LOC107670884 other upstream 1928352 8650628 ~ 8655017 (-)
LOC103027354 LOC103027354,LOC108438753 other upstream 3312410 10034686 ~ 10071884 (-)

Expression


Co-expression Network