rasgrp3 (rasgrp3,LOC107744459,LOC107670874,LOC107689794,LOC106576952)


Basic Information

Item Value
gene id rasgrp3
gene name rasgrp3,LOC107744459,LOC107670874,LOC107689794,LOC106576952
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 10822882 ~ 10936263 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007238737.3
gtgtgtgtgtgtaagtgtgtgactgagagtgtgtgtggggacAAGCTTGGACTAAatctggactggactggacatAGGCAAAGTGGCAGAGCGGTCAAGAGCAAGTGCTGCATCAGGTCAGCTGGACACCCTGTGAGTCTCTGACGACCTCTCGGCTCAGGAGAAGAGGAAAGAGTAGAGAAACAACAGAGTGAAGGGAGGAGAGAAGAAGAGGCCATCTGATGGCATTGTGTTGGATGCCTCAGTAAGGTCCTGGTTGACCTGGAGGTCATGGGGTCATTTACACTGGGGAAAGCAGCACCGCTGGAGCTGCTCTTGGATGCATGTATCCAGGCTTTTGATGATGATGGAGAGCTGCAGGGGAACCAGCTACCCCGGACTCTCCTGCTCATGCACCGCTGGTATGTCTCCTCTACAGAGCTGGCAGGAAAACTCCTCATGATGTATCGTGACTGTGCGGGAGATGACGGTCAGCGCACGAGGCTGAAGATTTGCTATTTAATGAGGTACTGGATCGATGAATTCCCGGCCGAGTTTGATCTGGATCTGGGTCTGATCCGACTGACGGAAGAGTTCAGAGATGTAGCAGCACAGCTGGGCTGTGACCAACACCTCAAACTGCTCGACATATCCACCATCCCTTCGTATGACTGGATGAGGAAGCTAACGCAGCGCAAGAAGCAGGTGAAGAAGGGCAAAGCCTCGCTGCTGTTCGACCACCTGGAGCCCATCGAGCTGGCCGAACACCTCACTTTCCTGGAGTACAAGTCCATCAGGAGGATATCATTCACAGACTATCAGAGCTATGTGGTGCAtggctgtttggttgataaccCTACGCTGGAACGATCCATTGCCCTATTCAATGGGGTCTCCCAGTGGGTGCAGCTGATGGTGCTCAGTAAACTCACCCCCCAGCATAGAGCCAACGTCATCAGCAAATTCATCCACGTTGCCCAGAAACTGCTGCATCTGCAGAACTTTAACACACTGATGGCAGTGGTTGGAGGTCTGAGCCACAGCTCCATCTCTCGGCTGAAGGAAACCCACTCTCACCTCAGCCCTGACGTCACTAAGATCTGGAGTGAGATGACCGAGCTGGTCTCATCTAATGGCAACTACTGTGCCTACCGGAAGGCCTACAGCGAGTGCGAAGGCTTTAAGATCCCCAtcctgggtgtgcacctgaAGGACCTGATCGCTGTGCATGTGGTCTTCCCTGACTGGGTGGAGGACAGCAAGGTGAACATTGTGAAGATGCAGCAGCTCTACCTCACCTTTAGTGAGCTGGTGGCCCTGCAGAGCACGGCGGCACAGGTGGAGCCCAACATGGACCTCATCTACCTGCTCACGCTTTCTCTGGACATTTACTACACTGAAGATGAAATTTATGAGCTGTCTCTGCTACGCGAGCCACGGAACCCCAAGTCACTGCCCACATCACCAACAACCCCCAACAAAACACAGGCTCCTCTTGACTGGGCCTCAGGAGTGACCACCAAGCCGGACCCCTCTGTCGTCAACAAGCACATCAGGAAAGTGGTGGATTCTGTGTTCCGTAACTACGATCACGACCATGACGGGTACATCTCTCAGGAAGACTTTGAGAGCATAGCAGCTAACTTCCCTTTCCTGGACTCCTTCTGTGTTCTGGATAAAGACCAGGATGGTTTGATCAGCAAGGATGAGATGATGGCGTATTTCCTCCGTGCAAACCCGGTGCTGCAGTGTAAAATGGGACCGGGCTTCATCCACAACTTCCAGGAGATGAACTACCTGAAGCCCACCTTCTGTGAACACTGCACTGGATTTCTCTGGGGAATTATCAAACAGGGCTACAAGTGCAAAGACTGTGGGGTGAACTGCCATAAGCAGTGTcgtgagctgctggtgttggcGTGTCGCAGACTTCCTCGTTCCACCTCTCTGGGCAGCGTCTCCCCCGGGGCCCTCACTCATAGCTCCCTGCCCAGCAGCCCTACACTGCCCGTCTGCAAAGatGAAGATGAGGTGTTTGAGTTTCCCACGGTGAGCTCCTCAGTGGGCTCTGACTTGGAAGGCAAGTCCATTACTCTGATGACTGGCTCTGCTCAGCGGATCTCAGTTCGGCTCCAGAGAGCCACCACTAGCCAGGCCACTCAGACTGAACCGCTGTGGCCCGATCACGGCTGGGGCCCGGCCGCTGATGCCGGCTCACATACTTTCCCCAAGATGAGGTGCAGGCCACACCGTAAAGCCTCAAAAAGCAAAGGTTTTGCTCGCTGGGAGAATGAATCGCAAGGGACTGCAGCGACAGGAGGGACCACGCACGGGAGGAGGGATTCACAGGAGCAGACAGAAGAGACGGAGAGTAACGGAATCTTGACGTTGCATCAGGATGACACAGAGGCTTCTGAGATCAGCTGACTTGCCAGCTCGGAGGGCCCAAGCAGGACCCCCCGGAGGCCGTCTTTACTACGGCCCAAAAAGCTCTCCTCCCTTGGGGACGTGTTGGGGTGCCTTAGGCCCCCGTTTGACCAGGAATAGACAGGGCCTGTACTCGGCCTGAAGACTGATTCTGCTACAGGATTAGAGCATCTCAGACTCCCAGACTGAGCCACCGACAGAAGAACCAGGGCTCGGGGTTGGGGGGAGAGGGTGATTATTGGTGTGGTGTATCCTTGCAGAAACAAAACTGCGGTTGccaatttgttttatataaatgtgtgtttgtgtgtgtgtgtatctccaGGTCATGGGGAGATGCTCTTAAACTGGATCCCACTGAGCTACTACTGTGAGGAGCTAGTGACttgggaaatgtttttttttaagtgttcttttGGGGGTATATTATGTTCACATTTAGTTTAGTAAATTTACTTTAGTAATAGTTCTAATAATTTACAAGCTCAGTTCTCTCAGTTTTAGTCAAAAATGGATTGTTTTTGAGGCAGCAGCTCCTCATTCAC
>XM_015602847.2
CCTGCCCGCACTCACTagctcgctcactcactcgctctctctctctcacttctcctgcctgtttctcttctcGATTGGCTGCATAACAGCGTCATACGGGCCACATGGCTGCTCTGTGGGTTGGTGTTTATAAGCAGGGCTTCGTGGATGGTGGGGTTTAGTAGAGTAGCAGTCAGCTGATTGAAACAGCCTGAGTAGCTTCGCTCTGTTCCACACAAAACCTCAATcacatgctgctgctgcggctgcTGTCACTGCGATGGCCGCACTGGACATGCTGGCGTGCTGCATCAGGTCAGCTGGACACCCTGTGAGTCTCTGACGACCTCTCGGCTCAGGAGAAGAGGAAAGAGTAGAGAAACAACAGAGTGAAGGGAGGAGAGAAGAAGAGGCCATCTGATGGCATTGTGTTGGATGCCTCAGTAAGGTCCTGGTTGACCTGGAGGTCATGGGGTCATTTACACTGGGGAAAGCAGCACCGCTGGAGCTGCTCTTGGATGCATGTATCCAGGCTTTTGATGATGATGGAGAGCTGCAGGGGAACCAGCTACCCCGGACTCTCCTGCTCATGCACCGCTGGTATGTCTCCTCTACAGAGCTGGCAGGAAAACTCCTCATGATGTATCGTGACTGTGCGGGAGATGACGGTCAGCGCACGAGGCTGAAGATTTGCTATTTAATGAGGTACTGGATCGATGAATTCCCGGCCGAGTTTGATCTGGATCTGGGTCTGATCCGACTGACGGAAGAGTTCAGAGATGTAGCAGCACAGCTGGGCTGTGACCAACACCTCAAACTGCTCGACATATCCACCATCCCTTCGTATGACTGGATGAGGAAGCTAACGCAGCGCAAGAAGCAGGTGAAGAAGGGCAAAGCCTCGCTGCTGTTCGACCACCTGGAGCCCATCGAGCTGGCCGAACACCTCACTTTCCTGGAGTACAAGTCCATCAGGAGGATATCATTCACAGACTATCAGAGCTATGTGGTGCAtggctgtttggttgataaccCTACGCTGGAACGATCCATTGCCCTATTCAATGGGGTCTCCCAGTGGGTGCAGCTGATGGTGCTCAGTAAACTCACCCCCCAGCATAGAGCCAACGTCATCAGCAAATTCATCCACGTTGCCCAGAAACTGCTGCATCTGCAGAACTTTAACACACTGATGGCAGTGGTTGGAGGTCTGAGCCACAGCTCCATCTCTCGGCTGAAGGAAACCCACTCTCACCTCAGCCCTGACGTCACTAAGATCTGGAGTGAGATGACCGAGCTGGTCTCATCTAATGGCAACTACTGTGCCTACCGGAAGGCCTACAGCGAGTGCGAAGGCTTTAAGATCCCCAtcctgggtgtgcacctgaAGGACCTGATCGCTGTGCATGTGGTCTTCCCTGACTGGGTGGAGGACAGCAAGGTGAACATTGTGAAGATGCAGCAGCTCTACCTCACCTTTAGTGAGCTGGTGGCCCTGCAGAGCACGGCGGCACAGGTGGAGCCCAACATGGACCTCATCTACCTGCTCACGCTTTCTCTGGACATTTACTACACTGAAGATGAAATTTATGAGCTGTCTCTGCTACGCGAGCCACGGAACCCCAAGTCACTGCCCACATCACCAACAACCCCCAACAAAACACAGGCTCCTCTTGACTGGGCCTCAGGAGTGACCACCAAGCCGGACCCCTCTGTCGTCAACAAGCACATCAGGAAAGTGGTGGATTCTGTGTTCCGTAACTACGATCACGACCATGACGGGTACATCTCTCAGGAAGACTTTGAGAGCATAGCAGCTAACTTCCCTTTCCTGGACTCCTTCTGTGTTCTGGATAAAGACCAGGATGGTTTGATCAGCAAGGATGAGATGATGGCGTATTTCCTCCGTGCAAACCCGGTGCTGCAGTGTAAAATGGGACCGGGCTTCATCCACAACTTCCAGGAGATGAACTACCTGAAGCCCACCTTCTGTGAACACTGCACTGGATTTCTCTGGGGAATTATCAAACAGGGCTACAAGTGCAAAGACTGTGGGGTGAACTGCCATAAGCAGTGTcgtgagctgctggtgttggcGTGTCGCAGACTTCCTCGTTCCACCTCTCTGGGCAGCGTCTCCCCCGGGGCCCTCACTCATAGCTCCCTGCCCAGCAGCCCTACACTGCCCGTCTGCAAAGatGAAGATGAGGTGTTTGAGTTTCCCACGGTGAGCTCCTCAGTGGGCTCTGACTTGGAAGGCAAGTCCATTACTCTGATGACTGGCTCTGCTCAGCGGATCTCAGTTCGGCTCCAGAGAGCCACCACTAGCCAGGCCACTCAGACTGAACCGCTGTGGCCCGATCACGGCTGGGGCCCGGCCGCTGATGCCGGCTCACATACTTTCCCCAAGATGAGGTGCAGGCCACACCGTAAAGCCTCAAAAAGCAAAGGTTTTGCTCGCTGGGAGAATGAATCGCAAGGGACTGCAGCGACAGGAGGGACCACGCACGGGAGGAGGGATTCACAGGAGCAGACAGAAGAGACGGAGAGTAACGGAATCTTGACGTTGCATCAGGATGACACAGAGGCTTCTGAGATCAGCTGACTTGCCAGCTCGGAGGGCCCAAGCAGGACCCCCCGGAGGCCGTCTTTACTACGGCCCAAAAAGCTCTCCTCCCTTGGGGACGTGTTGGGGTGCCTTAGGCCCCCGTTTGACCAGGAATAGACAGGGCCTGTACTCGGCCTGAAGACTGATTCTGCTACAGGATTAGAGCATCTCAGACTCCCAGACTGAGCCACCGACAGAAGAACCAGGGCTCGGGGTTGGGGGGAGAGGGTGATTATTGGTGTGGTGTATCCTTGCAGAAACAAAACTGCGGTTGccaatttgttttatataaatgtgtgtttgtgtgtgtgtgtatctccaGGTCATGGGGAGATGCTCTTAAACTGGATCCCACTGAGCTACTACTGTGAGGAGCTAGTGACttgggaaatgtttttttttaagtgttcttttGGGGGTATATTATGTTCACATTTAGTTTAGTAAATTTACTTTAGTAATAGTTCTAATAATTTACAAGCTCAGTTCTCTCAGTTTTAGTCAAAAATGGATTGTTTTTGAGGCAGCAGCTCCTCATTCAC

Function

symbol description
rasgrp3 Predicted to enable calcium ion binding activity and guanyl-nucleotide exchange factor activity. Predicted to act upstream of or within Ras protein signal transduction and regulation of GTPase activity. Is expressed in blood island; central nervous system; and trunk vasculature. Human ortholog(s) of this gene implicated in hypertension. Orthologous to human RASGRP3 (RAS guanyl releasing protein 3).

NR:

description
PREDICTED: ras guanyl-releasing protein 3

GO:

id name namespace
GO:0051056 regulation of small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005085 guanyl-nucleotide exchange factor activity molecular_function
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K12362 RASGRP3; RAS guanyl-releasing protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007238737.3 False 2951 mRNA 0.53 17 10822882 10936263
XM_015602847.2 True 3129 mRNA 0.53 17 10822882 10887359

Neighbor

gene id symbol gene type direction distance location
LOC103040295 LOC108430229 coding downstream 24080 10790644 ~ 10798802 (-)
LOC103026670 LOC103026670,LOC108430189 coding downstream 105042 10715367 ~ 10717840 (-)
fgfbp3 NA coding downstream 137947 10681156 ~ 10684935 (-)
LOC103025430 NA coding downstream 182642 10637848 ~ 10640240 (-)
LOC103026375 ankrd1,LOC107583650 coding downstream 334028 10477662 ~ 10488854 (-)
LOC111193129 NA coding upstream 268864 11205127 ~ 11208684 (-)
ttc27 ttc27,LOC107689788 coding upstream 284100 11220363 ~ 11363208 (-)
birc6 NA coding upstream 457498 11393761 ~ 12501284 (-)
pdzd8 pdzd8 coding upstream 706327 11642590 ~ 11808582 (-)
rlf NA coding upstream 1189564 12125827 ~ 12150716 (-)
G79533 NA non-coding downstream 187789 10634500 ~ 10635093 (-)
G79515 NA non-coding downstream 265424 10506347 ~ 10557458 (-)
G79514 NA non-coding downstream 266014 10516926 ~ 10556868 (-)
G79357 NA non-coding downstream 521589 10301069 ~ 10301293 (-)
G79347 NA non-coding downstream 563000 10259602 ~ 10259882 (-)
G79602 NA non-coding upstream 274788 11211051 ~ 11217908 (-)
LOC111193138 NA non-coding upstream 435816 11372079 ~ 11375380 (-)
G79633 NA non-coding upstream 578826 11515089 ~ 11515665 (-)
G79642 NA non-coding upstream 597315 11533578 ~ 11535398 (-)
G79644 NA non-coding upstream 599530 11535793 ~ 11536344 (-)
LOC103027264 NA other downstream 486166 10294488 ~ 10336716 (-)
LOC103027354 LOC103027354,LOC108438753 other downstream 750998 10034686 ~ 10071884 (-)
LOC111193185 stac,LOC107715935,LOC107670884 other downstream 2167865 8650628 ~ 8655017 (-)
spdya spdya other downstream 2181050 8632646 ~ 8641832 (-)
LOC111193183 NA other downstream 2305234 8476397 ~ 8517648 (-)
ltbp1 ltbp1 other upstream 5424 10941687 ~ 11183941 (-)
G79865 NA other upstream 1033178 11969441 ~ 11971939 (-)
G79945 NA other upstream 1221323 12157586 ~ 12192028 (-)
ncmap NA other upstream 1398136 12334399 ~ 12372804 (-)
edaradd edaradd other upstream 1648899 12585162 ~ 12613731 (-)

Expression


Co-expression Network