id3 (id3)


Basic Information

Item Value
gene id id3
gene name id3
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 10084208 ~ 10087040 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007239178.2
CACTCAGCACTGCTCCCTCCTCCTGTCTCTTCCACCGTGGCCAATTGTGAGTCTTCAATTAACATACTCGTCTTCTCATTGGCTCCGCGGGGCATgagggtttgtttgtttttgtagagTAGGCGTGTCCATAGCAGATTTAGTATAAAACCAGCCCTCCTGCGCTGTCACTGTTCACAGGGCTGGTGAATTTAAGTGGGATTTTTGTGAGTTTATTTCTGCGGGCTGGAAAATCTGAGTGGATATTTGCGCTCGGCAGAGTGTTGGATTGTTGTTTCCATTTTTGTTGTTAAGGAAAACAGAGAAATGAAGGCTATCAGTCCGGTCCGCGCCGTCAGAGGCTGTTACGAGGCGGTTTGCTGCGTTTCCGAGCAGAGCCTGTCCATCAGCCGCAGCCGGAGCCCGGCGGAGCTGTCCGACATGAACGACTGCTACTCCAGGCTGAAGGAGCTGGTGCCCAGCATCCCGCAGGACCGGTCGGTCAGTCAGGTGGAGATCCTCCAGCATGTGATCGACTATATCTTCGACCTACAGATCGCGCTGGAGGACGAGGCGGACCGGGTCCAGAACTCGGCGGACGTGCTGAGAGCGCTGCAGAGCTCAGAAATCTCATTCCCCAAAGAAGATGCAGCTCTCTGTCACTAAGCAACAAGGCTCGCGCGCGTTCAAACGGTGCAGGACAGAAACTCCTACACTCATGGacaagagagggagggagtgaaggggttggacacacacactcatacacgaAGTGTCTCcattcagactgtgggaaaagaACCTGCACCCTGCTGAAACCATTAAAACCACCCAGTCTTTGGTCACTGGACTCTTCGACACACCAAAGCTGAAGAATTGTGACGTTTGGAGGGGAGTGCGCtcttagatatttttttaatcattcctTTATGTGATGCTACAATCAGGCCCTGTGAAATTTCTAGTTACATTCCAAACATTTGAACTAACTTCATACTGGTCCTCCATATCTGCTCACTCACTTAATTGTTTATGCAATCTTcatgctctcttattttcttttacaattcTCACTTTttactcttcctctctttctcacgATGTCCTCTCATTCTCCACTTGGTTGCAGACCTTATGCTTTTAAAGTGTGTACATATTcatttgattgttttttgtgtgtttgggttGGTGAAGGGGATGTACGGATTGTAGAGATTATTATGTGAACTCTATAAATATAGAGTGAATTGTAAAGGTTTGTGGGGATTCTACATTTCTGCAGACTGTATGTATATCTTCTGagttttataaactctgattttgcatttttgtgtaTGTTCACTTTTTGCATACTGAAATAAATCActcaaaataagaaatta

Function

symbol description
id3 Predicted to enable protein dimerization activity. Acts upstream of or within dopaminergic neuron differentiation. Predicted to be located in cytoplasm. Predicted to be active in nucleus. Is expressed in several structures, including digestive system; germ ring; nervous system; polster; and presumptive ectoderm. Orthologous to human ID3 (inhibitor of DNA binding 3, HLH protein).

NR:

description
DNA-binding protein inhibitor ID-3-A-like

GO:

id name namespace
GO:0071542 dopaminergic neuron differentiation biological_process
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K17694 ID3; DNA-binding protein inhibitor ID3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007239178.2 True 1361 mRNA 0.46 3 10084208 10087040

Neighbor

gene id symbol gene type direction distance location
LOC111193127 NA coding downstream 43143 10040341 ~ 10041065 (-)
LOC103045212 LOC108441044,LOC108269989,LOC107594821,LOC107719497,LOC107590922,LOC107733139 coding downstream 60601 9947512 ~ 10023607 (-)
LOC111193187 NA coding downstream 245482 9837978 ~ 9838726 (-)
LOC103043477 esrrg,LOC107582200,LOC107733169 coding downstream 906513 9056068 ~ 9177695 (-)
ush2a ush2a,LOC108444108,LOC108414482 coding downstream 1057652 8768662 ~ 9026556 (-)
msra msra,si:ch1073-358c10.1 coding upstream 46942 10133982 ~ 10171770 (-)
ythdf2 ythdf2,LOC107721611,LOC107654833,LOC107697702 coding upstream 118095 10205135 ~ 10222403 (-)
LOC103026970 NA coding upstream 341345 10428385 ~ 10475469 (-)
LOC103026375 ankrd1,LOC107583650 coding upstream 390622 10477662 ~ 10488854 (-)
LOC103025430 NA coding upstream 550808 10637848 ~ 10640240 (-)
G79269 NA non-coding downstream 83390 9998895 ~ 10000818 (-)
G79268 NA non-coding downstream 85633 9997948 ~ 9998575 (-)
G79266 NA non-coding downstream 143275 9938191 ~ 9940933 (-)
LOC111193188 NA non-coding downstream 153704 9878319 ~ 9930504 (-)
G79285 NA non-coding upstream 14496 10101536 ~ 10101746 (-)
G79288 NA non-coding upstream 18383 10105423 ~ 10105681 (-)
G79290 NA non-coding upstream 21764 10108804 ~ 10114162 (-)
LOC111193189 NA non-coding upstream 50943 10137983 ~ 10141355 (-)
G79347 NA non-coding upstream 172562 10259602 ~ 10259882 (-)
LOC103027354 LOC103027354,LOC108438753 other downstream 12324 10034686 ~ 10071884 (-)
LOC111193185 stac,LOC107715935,LOC107670884 other downstream 1429191 8650628 ~ 8655017 (-)
spdya spdya other downstream 1442376 8632646 ~ 8641832 (-)
LOC111193183 NA other downstream 1566560 8476397 ~ 8517648 (-)
LOC111193177 kcnh1,LOC108433307,LOC106904951,LOC103476431,LOC102309410,LOC103370850,LOC103137420,LOC101155792 other downstream 2863354 7198909 ~ 7220854 (-)
LOC103027264 NA other upstream 207448 10294488 ~ 10336716 (-)
G79582 NA other upstream 841600 10928640 ~ 10929596 (-)
ltbp1 ltbp1 other upstream 854647 10941687 ~ 11183941 (-)
G79865 NA other upstream 1882401 11969441 ~ 11971939 (-)
G79945 NA other upstream 2070546 12157586 ~ 12192028 (-)

Expression


Co-expression Network