XLOC_007283 (hspa4b)


Basic Information

Item Value
gene id XLOC_007283
gene name hspa4b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007125.7
NCBI id CM002898.2
chromosome length 52660232
location 23687678 ~ 23708159 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00014378
AACCGGAATTGTTCCTGTTTTCTCCTGAGCGGCGTTTATCATCCGCAGCCTCATTCCTCCATGAAGTACAGTAGAATAATGAATTAAAACTGTCGTATTTACTCTTCGCATTATACAGATTGACCACCTAGTCCTCATTTGATTTCGGGCTTATAGTACTTGAGTAATCCTGCTATTTTTAAGATGTCGGTGGTGGGTTTTGACGTGGGTTTTCTCAACTGCTATGTTGCGGTAGCTCGAGCCGGAGGAATCGAGACTGTGGCCAATGAATACAGCGACCGATGCACACCAGCATGTGTGTCTTTTGGACCACGAAATCGGTCTATTGGAGCTGCAGCAAAAAGCCAGATGGTCACCAACTGCAAAAACACTGTCCATGGATTCAAGCGTTTTCATGGTCGGGCTTTCTCAGATCCATTCGTCCAGAACTTGAAGCCTAGTCTCGTTTATGATCTGGCACAGATGCCATCGGGCACGACGGGCTTAAAGGTGATGTACATGGAGGAGGAGAAGGTGTTCAGCATTGAACAAGTCACTGCGATGCTCCTCACCAAACTCAAGGAGACTGCTGAGAGCGCCCTCAAGAAGCCTGTGGCTGACTGTGTCATCTCTGTCCCCTGCTTCTACACCGATGCTGAAAGGAGATCCGTCAtcgatgcagctcagattgcaggACTCAACTGTCTGAGACTCATGAACGAGACCACTGCAGTGGCTCTGGCATACGGCATCTACAAGCAGGATCTACCCGCTCCTGAGGAAAAGCCAAGGAATGTGGTGTTTGTGGATATTGGCCATTCAGGCTACCAGGTTTCTGTGTGTGCCTTTAATAAAGGCAAGCTTAAGATTCTTGCTACAGCCTTTGACCCTGAAATGGGAGGAAAATATTTCGATGAGAGGCTGGTCAAATATTTTTGTGAGGAGTTTGTCGTGAAGTACAAACTAGATGCGAAGACCAAACCCAGAGCTCTGGTCCGGCTCTTCCAGGAATGTGAGAAGCTGAAGAAGCTGATGAGCGCCAACTCCTCCGACCTGCCGCTCAACATCGAGTGTTTCATGAATGACGTTGATGTCTCAAGCAGACTTAACAGGGCTCAGTTTGAAGAGATGTGTGCTGATATTTTAGCCCGAGTGGAGCCTCCGTTGCGCAGCCTCCTGGAACAAGCTCATCTGAAGAAAGATGACATCCATGCAGTAGAAATAGTGGGCGGTGCTTCTAGAATGCCGGCCATCAAAGAGCGAATCAGCAAGTTCTTTGGGAAAGAGCCGAGCACAACGCTGAATGCAGATGAAGCTGTGGCCAGAGGATGTGCTCTCCAGTGTGCAATCCTCTCTCCGGCTTTTAAAGTCCGTGAGTTCTCGATAACAGAAGTGGTTCCGTTTCCCATCTCTCTTAAATGGAATTCTGCAGCTGAAGATGGAGTCAGTGACTGTGAGGTTTTCCCAAAGAACCATGCAGCACCTTTCTCTAAAGTGTTGACCTTTTACCGGAGAGAGCCATTTACCTTGGATGCATACTACAACTCCCCTAAAGAGCTCCCTTATCCAGATCCCACAATAGGCCAGTATGTTGTCCAGAAAGTGGTTCCCCAGGCCTCCGGTGAGAGTTCAAAGGTTAAAGTGAAGGTGCGAGTGAACATTCATGGCATCTTTAGTGTTTCCAGTGCTTCACTAGTGGAGGTGCAGAAAtctgaggaggaagaggagagcaTGGAAACCGAGCAGAgcacagaaaaagaaaatgagAACAAAATGCAGGTTGATCAAGAGGAACAAAAGACTCCAGAGACGGAACAGGAAAATGGCGAGAAAAAACCTGGAACTGAGGAAATGGAGACCTCAGCAGAGGAAGGCAAACAGGAGAAGAAATCAGATCAGCCTCCCCAAGCCAAGAAGCCCAAGGTGAAGACAAAGGTGCTGGATTTGCCCATTGAAAACAACCCGCAGTGGCAGCTGGCCAACGACATGCTGAATCTGTTCGTGGAGAGTGAGGGTAAGATGATCATGCAGGACAAGCTGGAGAAGGAGCGCAATGATGCCAAGAATTATGTTGAGGAGTATGTGTACGAGATGAGGGACAAACTGCATGGCATATTCGAGAAGTTCGTCACTGAGAGTGACAGAGATGTTCTCTCATTAAAACTAGAAGACACTGAGGTCTGGCTGTATGAGGATGGAGAAGACCAGCCCAAACAAATATACATCGACAAACTTGCTGAACTGAAGAACCTTGGCCAACCCATTCAAGACAGATACAGAGAGTTTGAGGAGAGACCCAAAGCTTTTGAAGAGCTGGGCAGACAGTTGCAGCAATACATGAAGATTGTTGAGGCCTACAAAACCAAGGAAGAGCAGTATGATCATCTGGAGGAGGCAGAAATTCAGAAGGTGGACAAGATGGTGAATGATGTCATGATCTGGATGAACAGTAAAATGAACCAGCAGAGTAAACAGAGTCTTGCCATCGAGCCAGTGGTGAAAACGACAGAGATCCAGGCCAAAACACGGGAGCTGTTTTCTACTTGCAATCCAGTCGTGACCAAACCCAAGCCCAAAGTGGACTTGCCAAAAGAAGAGAACCCATCAGAACCCAACGGGCCCGTCAACACACAGGAAAACCCTGAAGCTCAGCCCGGCGGCACAGAACCAGCTGCTGCAGACAGTGCAGGAAACACAGAAAACAAGCCTGACATGGACCTTGATTAAACACGCTGTGTAATGTTATGTTAACGTTACACGTTATGTTATGTAACataatgttttgttaatgttaacttatGTTTCCAGTGACTAGAATgctaaatcatcatcatcatcctcctcaaAACAGGGAGACTCTAACAGTGAGCGATTCAGTGGCTACATTTGCATGTCGTTTTATATTAAGAAAATCATAAGTCATAATGCTGTAAGACTTCTGATTGAGAACAATTCTGTCTGCCTACAATTGAGTTTCTGTCATATGCCGGTTCTGTCAGCTGTTGTTTCAATAAATATGGATTGAAACGTG

Function

symbol description
hspa4b Predicted to enable ATP binding activity. Predicted to be active in cytosol and nucleus. Is expressed in several structures, including gut; head; liver; neural rod; and pectoral fin bud. Human ortholog(s) of this gene implicated in Chagas disease. Orthologous to human HSPA4 (heat shock protein family A (Hsp70) member 4).

GO:

id name namespace
GO:0005829 cytosol cellular_component
GO:0005634 nucleus cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-6018 Predicted to enable ATP binding activity. Predicted to be active in cytosol and nucleus. Is expressed in several structures, including gut; head; liver; neural rod; and pectoral fin bud. Human ortholog(s) of this gene implicated in Chagas disease. Orthologous to human HSPA4 (heat shock protein family A (Hsp70) member 4).

Ensembl:

ensembl_id ENSDARG00000018989

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00014378 True 3010 mRNA 0.47 19 23687678 23708159

Neighbor

gene id symbol gene type direction distance location
XLOC_007282 med12 coding upstream 8539 23593989 ~ 23679139 (+)
XLOC_007281 si:ch211-221f10.2 coding upstream 96000 23518110 ~ 23591678 (+)
XLOC_007280 enox2 coding upstream 208101 23076127 ~ 23479577 (+)
XLOC_007279 NA coding upstream 728458 22841157 ~ 22959220 (+)
XLOC_007278 BX005043.2 coding upstream 875681 22807498 ~ 22811997 (+)
XLOC_007284 gnpda1 coding downstream 975 23709134 ~ 23715349 (+)
XLOC_007285 ndfip1 coding downstream 9006 23717165 ~ 23726768 (+)
XLOC_007286 kctd16a coding downstream 103649 23811808 ~ 23812725 (+)
XLOC_007287 sh3rf2 coding downstream 165903 23874062 ~ 23970173 (+)
XLOC_007288 kif3a coding downstream 262659 23970818 ~ 23999566 (+)
XLOC_007268 NA non-coding upstream 1547465 22129096 ~ 22140213 (+)
XLOC_007259 NA non-coding upstream 1909842 21777557 ~ 21777836 (+)
XLOC_007255 ndufs8b non-coding upstream 2008761 21671107 ~ 21678917 (+)
XLOC_007293 NA non-coding downstream 522752 24230911 ~ 24234703 (+)
XLOC_007298 BX005228.1 non-coding downstream 649241 24357400 ~ 24357517 (+)
XLOC_007300 NA non-coding downstream 1168943 24877102 ~ 24878581 (+)
XLOC_007302 AL645792.1 non-coding downstream 1335651 25043810 ~ 25046769 (+)
XLOC_007303 NA non-coding downstream 1344550 25052709 ~ 25055796 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000000_17884239_17897080 HSPA4B, HSPA4 coding CI01000000 null 17884239 ~ 17897080 (-)