wdr43 (wdr43)


Basic Information

Item Value
gene id wdr43
gene name wdr43
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 8607944 ~ 8622583 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007257563.3
TACCCCACGTGTCTCCCCCAGCGCTCGGCTACGCACGCTCAGAGTCGCGCTGAACGATGGCGGCGGACGGCGGAGGTTCAGCTCCTTCGGCTTCTCTCGCGCTCCCGTGCGCCTATTCACCGGCGCCGCGGCGGCAGTACCTGGCCGTGTGTGCTCGCGACGGACGCCTGCGGATCTGGGACGCGGACGGCGGCGGCAGCGGTGGGAAACCCCGGCAGGAGTACGCGCCCTCCGCGCGGCTCAGCGCTGCCTGCAGCTGCGTGGCGTGGGGCCCGTGCAGAACCAGCAAGGAAGGTCcacagaggaagaagaggaaatCAGAGGCAGGACAGGCTGTGGAGCAATCAGATCTGTTGGCGCTTGGCACAGCTGCGGGCACAGTTCTCATCTACAGCACAGTGAAGGGGGATCTGCACTGCACACTGGATGGAGGACATAGTGGAGGGGTCAACAGCATCCAGTGGCACCCAGAAGACTCTCTTCTCTACAGCGGCTCAGACGACACGCACATCGTTGAGTGGGACCTGCAGACAGGCAAAACACGCTGTAAATGGAAAGCAGACAGAGCGGCAGTGACGAGTCTTTCTGTAAGTCCAGATGGGAAATTCCTGCTGTCTGCTGGAATGACCATCAAAATGTGGGACTTGGAGACCAAGGAAATGTACCGGAAGTTCACAGGTCACGCCACAACGATAACGACGCTCTGCTTCGCAACAAACAGACCACCAGACAGTAATGGTCTCTACTTTGTGTCTGGAGCAGCTCATGACCGACTTCTCAGTGTGTGGCAGGTGCGgtctgatggaaaagacaagaATGCGGTGGTGTCTTTTACATTGACAGATGAACCCCAACACATCGACCTGCAGACGTCCAACAGCAAAGATGAAGCGGTGAGGTTAGCAGTGGTGTGCAAGGATGGGCAGCTTCACCTCTTTGAGCACTTTCTCAATGGACCCGGTAAAAAGCCCTTGTCTCCAGTGTGTTCGGTACAGGTGTCAAGTGTTGGAGGCAAAGGGGAAGGAGACGTGCCTGTACCCGTGCCACTACTGGCTACAACTCTCTGTGCGGACAAACAGAACCTCATTCTGGCCTACGGAAACCATCTGCAGCCTGTCATTGAGAAAATGCCCATAAATACGACGGAGAGGCACGTGTGCCTGATCCGAGACTTACACACCACACTCTCCCTTTCTGTTGATGCTGCTGTGTCCAAGGTAAAGACGCCCAttgtaaatgaacagaaaagCAAAGTACTTATACCGGGACTTCCTGGACACAAAGCTCCAATCAGAGCAAACTCCAGCCAACCGGAGAAGAGGAAACAAGGGTCCAGTGCTACAGAGATGTCTATAGAGGAGCGGTTGGAACAAATCGAGTTGAGTGTATCGGGGGGTAAAGGTGGAGACAAGGGGGCTTCATCGTCTCTACAGACAGATAGCTTTGCCGTGCTACTGGTGCAGGGCCTGGAGAGCAAGGACTCACAGATCCTCAATAAAATCTTCCAAACAAAGAAGGAAACCTTGATCAAGAAAACGGTTGCCCGCCTGCCGCCTCCTGCAGTTTTGCCTTTAGTGGAAGAGctATCAAAAAGGCTGCAAGGACATCCATTTGTGGCGATATTAATAGTACAGTGGTTAAAGGCAGTTTTGACGCAGCACACATCATACTTGTCATCGCTACCTGACTTGGTGTCTCAGTTAGGGCTGCTGTATCATATGATTGAGACCCGGGTTAagctgtaccaccagctcacgAGACTTCATGGCAAACTCTATCTGCTCATGACTCAGGTGGCAACAAGCAGCAGTACCCAGAAAGCTGGTGACCTGGACCATACGGCCAAGCTTGTGTACGAGGAAGagtcTTCAGATGAAGGAGATTCGGGAGCTGAGGGACTCCATGAGGATGACTCTGATGGCtgggaggatgaggaggaggacgCGGAGAAAGAGGGGGCAATGGATGTGACGGAGGACGGGGAAAACCACAAAGACAAGGAAGGCAGTGACGAGGAGGAAGACATGAAAGACGAGTCCAAAGCGAATGGCGATTCGGACTTAGACCCTGAAAACGAGAGCGAGGAGGAGTGAAAAAAGGAATTGAACATAAAAAGGAGCTTGGaagatttatatatttcattttatttttttcttgttttcattttattgtacaaaaacaaaacagatacaaGAAAGGTTGTTTTATAGAGTTCCAACGTCCGCCATGTCCTGGACTCATGGTGGCTATTTTTTCCAGGATGGCCACTAGGGCGGTGAAACTGACAGCTTGACCAAGCTGAGAACTGCACAGCAGAAACGAGTGTCTGAACTCTATTTTTCTTGCTGTTCGTTTTGACCTCAAGACTGCCTCcctcttattctttcttttttttggcccTGGTGCTGTTATAACTGTACCACACCTTCCTTTAACCTGTGGCAGGAGTGTTTTGTTTGGTCAGGGCTCAGGTTGTTTATTGTATCCTTATACAATACGTGTACCTGTTCAGTTCGTTCTGTTTAATGGCGTCATGAAATTTCCCAGTTGCCAGAAAATATTGGGAATTTAAGCTCAATcagtattttgtcttttttcttcatTGTGAAACCAGACAAATTTGAAAGCTGCTCTGCTTGgttttatatatgtaaagaaatcAAGATTACTGTGGGTAAAATCCTgagtaatgaataaataataagaaatctGGTTTGAACTGTATGTGATATTTGATTGAGAGCTGAGTAGAGGAGTACAAAAATCTTGGATCAAACTTTCATGGCCCCGAAATCATTGTGTACCAAATCTGTACTGATTGTAGCTTTAACTCAACCATCGACTCCCATTGTGTCTGAGAGTACTGAGACGACACTGGGTCCATTAAGACAGTCTTTATAATGTGCCTTTGTGTTTCTAAACCACCTTTTTACTTTTCACTCCCCACCCCCCCCTCCACTCTCTCCTTCCCTGTATATCTCTGCCTGCAGTGTGGGAAGGGTACTATTTCCTTTTGTCCACTTTTCTTAGTGACAGCAAGATGGCAAAGCTTTAGAGTGGATGTCAATGTGAACTTGGCTTGATTAGGTGAATAATAAATATTCAGATTTAATTCGTATGTCTCTCAGAGGCCTGAGAGTCTCTTGATGCTCAAAGTGgttgctttaaaacattttgtcaaCCATAACCTTTTTTTCATGCAAACAATATCAGCGACTGTTgtacagtttaaataaaataaattctttttttttgttctca

Function

symbol description
wdr43 Acts upstream of or within several processes, including blood vessel morphogenesis; embryonic viscerocranium morphogenesis; and hematopoietic stem cell differentiation. Is expressed in brain; gut epithelium; and pharyngeal arch. Orthologous to human WDR43 (WD repeat domain 43).

NR:

description
WD repeat-containing protein 43-like

GO:

id name namespace
GO:0001525 angiogenesis biological_process
GO:0060218 hematopoietic stem cell differentiation biological_process
GO:0001570 vasculogenesis biological_process

KEGG:

id description
K14546 UTP5, WDR43; U3 small nucleolar RNA-associated protein 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007257563.3 True 3261 mRNA 0.48 18 8607944 8622583

Neighbor

gene id symbol gene type direction distance location
LOC103047224 LOC103047224,LOC108433332,LOC107583588 coding downstream 3428 8601082 ~ 8604516 (-)
LOC103047525 LOC108433331 coding downstream 27883 8575266 ~ 8580061 (-)
gale gale,LOC107721820,LOC107583591 coding downstream 57977 8529837 ~ 8549967 (-)
zbtb8a zbtb8a coding downstream 80008 8520075 ~ 8527936 (-)
dlgap2 dlgap2,LOC107583594,LOC107654879,LOC107715999,LOC107721130,LOC107583025 coding downstream 385626 8008547 ~ 8222318 (-)
ush2a ush2a,LOC108444108,LOC108414482 coding upstream 146079 8768662 ~ 9026556 (-)
LOC103043477 esrrg,LOC107582200,LOC107733169 coding upstream 433485 9056068 ~ 9177695 (-)
LOC111193187 NA coding upstream 1215395 9837978 ~ 9838726 (-)
LOC103045212 LOC108441044,LOC108269989,LOC107594821,LOC107719497,LOC107590922,LOC107733139 coding upstream 1324929 9947512 ~ 10023607 (-)
LOC111193127 NA coding upstream 1417758 10040341 ~ 10041065 (-)
G78986 NA non-coding downstream 27118 8580583 ~ 8580826 (-)
G78983 NA non-coding downstream 44417 8562098 ~ 8563527 (-)
G78978 NA non-coding downstream 70320 8535936 ~ 8537624 (-)
G78890 NA non-coding downstream 175660 8428518 ~ 8432284 (-)
LOC111193182 NA non-coding downstream 192834 8379489 ~ 8415110 (-)
G79039 NA non-coding upstream 736995 9359578 ~ 9359810 (-)
G79064 NA non-coding upstream 973429 9596012 ~ 9596425 (-)
G79067 NA non-coding upstream 991140 9613723 ~ 9613985 (-)
G79080 NA non-coding upstream 1024100 9646683 ~ 9647063 (-)
LOC111193186 ttc27,LOC107689788,LOC107670805 non-coding upstream 1090457 9713040 ~ 9716352 (-)
LOC111193183 NA other downstream 90296 8476397 ~ 8517648 (-)
LOC111193177 kcnh1,LOC108433307,LOC106904951,LOC103476431,LOC102309410,LOC103370850,LOC103137420,LOC101155792 other downstream 1387090 7198909 ~ 7220854 (-)
G78297 kdm1a other downstream 3421586 5184792 ~ 5186358 (-)
G78083 NA other downstream 4401560 4045434 ~ 4206384 (-)
G78023 scfd1 other downstream 4767374 3834562 ~ 3840570 (-)
spdya spdya other upstream 10063 8632646 ~ 8641832 (-)
LOC111193185 stac,LOC107715935,LOC107670884 other upstream 28045 8650628 ~ 8655017 (-)
LOC103027354 LOC103027354,LOC108438753 other upstream 1412103 10034686 ~ 10071884 (-)
LOC103027264 NA other upstream 1671905 10294488 ~ 10336716 (-)
G79582 NA other upstream 2306057 10928640 ~ 10929596 (-)

Expression


Co-expression Network