LOC103026256 (tdh2,LOC108433314,LOC107582959,LOC107583601,LOC105896089,LOC107721289,LOC107659247,LOC108269662)


Basic Information

Item Value
gene id LOC103026256
gene name tdh2,LOC108433314,LOC107582959,LOC107583601,LOC105896089,LOC107721289,LOC107659247,LOC108269662
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 7609633 ~ 7624460 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007257581.3
CCAATGGTCGTTCGGTGCGCCTGTTTGCTGACCAATCGGAGGGTAATCTCTTAATTCTAACGGTTAAATTCCACGAAAATCCTCTCCTTTATCAGCGCTGTTTACTTTAACACTTCTTACAGACGGAGATGTTTTGATTTCCAAACGTACGTGGTTCTGCAGGCTGGATTTGAGAGGATTGTTTCCaaagtttttttcccccaaaaaacaaCAGGTGGTGGACATGACTGTGTGTGGTGGTGCCTTGGCTCTCCTGAGATCTCTGTGCCTCTCCAGCTGCTCCAGAGTGGCCGGCTGGACCCCTCGCCGGATCGGCCTCAGAAACATCAGCAGCAACCACGAGTGCTTGGACTGTCCTCGAGTCCTCATCACAGGTGGGCTGGGGCAGCTTGGTGTGGGACTGGCACAGATGCTGAGAGAGCAGTATGGGAAAGAAAACGTGATCCTGTCTGACATCAAGAGACCACCTACAGAAGTTTTCAACATGGGTCCCTTTGTGTACGCCGACGTGCTGGACTATAAAAACCTGAGGGAGCTGGTGGTGAATAACCGGATCACATGGTTGGTGCATTACAGCGCCCTGCTGAGTGCAGTGGGAGAGGCCAACGTCACGCTCGCCAGAACCATCAACATCACAGGTCTGCATAATGTTTTAGATCTGGCTATGGAGAACTGTTTGCGTCTCTTTGTGCCCAGCACTATTGGGGCATTTGGCCCCTCCTCCCCCAGAGACCCAGCCCCCGATCTCTGCATCCAGAGGCCTCGGACAATCTATGGCGTCTCTAAAGTCCACGGAGAGCTGATGGGCGAGTATCTCCACCATAAATATGGCCTGGATTTCCGCTGTCTGCGCTACCCTGGAGTTATTTCAGCCACCACAAAACCTGGAGGAGGCACCACAGACTACGCCGTTCAGATCTTCCACGATGCTGTCAGCACCGGCCACCACGAGTGCTACCTGCGTGCGCAAACGCGCTTACCCATGATGCACATCTCTGATTGCCATCGAGCCACCTTAGAGTTCATGCAGGCTCCCGAGTGCCAGCTCTCTCTGCGCACCTACAACATCGCAGCCATAAGCTTCACGCCTGAAGAGCTGACCGAGGAGATCCGCAAATACGTACCTCACCTGAAGGTCACCTACAAACCGGACCCTGTTCGCCAGAACATCGcGGACAGCTGGCCAATGCGATTTGATGACTCCAATGCTCGTCGAGATTGGGGCTGGAAGCCAGCATACAGTCTCCCAGAACTAGTCAAGGATATGTTGGACCGCATCCGTAACAAAAGGACCAACGCAGGCCTGCCTGTTAGCTAGCAGTCCAGCTGTACTGACTAAAAGCATTGGTCACCTTGCCCCTTAAAgcccccccacccacccaccatgCTCCCAGTAAAGGGGaactgtgtctcttaaccaggAAATTTCCTATTACTACAGTATTCCAGCCAAGGAGAGTCTTCCACATAAACTACGCTTCTCAGCACTGACAAGCACTACCTGTGGATTATGGACGCTCACAGTTttgctctctatctctgtctctctttctctctcacacacacattcatcagCAGCCTTAGTCTTTTTGCAGGGATTATTTTTCCATTAGTGTTTAACAAGTTGTACTTATAGGAGAAAAGGTAGCAAATCTTTGTTAACACTAACTTTTCTTTTTGCATCGTAATGTTGTTACGACCTCCAGATATCTTCGTGCTTCTACGTCTCTCTCTCATAAAAGTTGTAGCTCATTGCAGTATCCAGCCAATTTGGCTCATTAGCAGCCAGGTTAAGCTAAACTTTTTGCCAATGTTAATGAGTATAGCTAATTAGCAGCCAGGTTAAGATAACCTAATTTGCTGTGTTAATGAACATAGCTCATTAGCAATCAGGTTAAGATAGCTTAACTGGCTGTGTTAATGAGTATAGCTCATTAGCAACCAGGTTAAGCTAGCCTAACTGGCTctgttattgaaaaaaaaataccttattGGCCGCTAGGTTACGCTAACCTAATTAGCTTTGTTATAAGAAACAAGGGAAATTAACCAAATTTGCTTTGTTAATGCAAATAGCTTATTAGCAGCCAGGTTAAGCTAACCTAATGAGATGGTTCTGTTAATAAATACAGCTCATTGGCATCCAGGAGAACTGACTGTGTTAAAGAATATAGCTCATTAGCAGCAAagttatgctaagctaacttgCTCTGGTAATAAATATAGCTCATTGCCAGCCAACTAAATTACCAGAATTGGCTGTGTTAAAGAATACAACTTATTAGCAGCAACGTTATGCTAAGCTTACTTGCTCTGTTAATAAATATAGCTCATTAGCAGCCTAAGAAATGAACCTAACTGGTTCTGTTAATGAATATAGGTCATTAGCAGTCAGGAAAATTAACCTAACTGGTAGTGGCAGTGAATATAGCTTATTAGTAGTGAAGTTATGCTATGCTAACTTTCTATGGTAATAAATTTAGCTCATTAGCATCCAGGTGAACTAACCAAACTTGCTAGCTTAAAGAATATAGCTCATTAGTAGTCAGGTTAAGCTAAACTAATTGGCTCTGTTAATGCTAATAGCTCATTAGCAGCCAGGGTAAGCtggctaaacaaaacatttatgcaaatgaatatAGCCTGATTGTTTCTTCTAatgaatatattgtttattatcagCCAGGTTACTGAATATGGTTATTAGCATTTAGCTTGCGTTAAACATTTTACTAGGATCCGTTCATATCTAGTTATCCCCAGTGAAATAAACTTTACTATGTATTTAATTATGtcagttaaataaaactaataatgcTGTTATACTAGAAATCctgggacaaaaaaaactttttttttctttttcccatcAAATTGTACTTTCAACCTACTGATATTTCTGTTATTCTACATACTATATTTTACTGTcctaaaattatcatttatcattttcttacTCTGCTTTTGTTCAATAGTATTGTAATGAAACTTGGTTGTCTTGGTTTGACTGCTCTGGGACAGTTTTTACTCTCAATTCCCTGTAACCTCAGGGAACCATCATCGGCTATCAGGCTTGATGGTTACATAGTCTTAAGGGTGTTGACCAGAGTGCAGTGTTTGGGATTGGCTCTGGGTGCTTCTCTTAAACACAGTTGTTCCTTATGATGGTCTTGTCTGGTTAGgggccttatttattttttatggcaCTTAGAAGTTTAGCATTTAGTTTGGTGGTGTGGATTTTCTATaactagatatttattttttatttaacaaataacaTATGAATTCAGACTGCTCTTATGCTCAAAGTAATGATAATATAAACAGGCACCATCTGGTTCAATATTATTGGTCTTGTCCGTAATGTACTCAATCATATCATTCTGAATTACCACTAAATGCTGCCTTGTATTTCCCTGTTTCTCCATTCACAAAACCTAGCCTTTCATGCTGAAGTTCCAATTACGTTCTTCTGTCCCGTCATCCATATAGCTGTTTAACGTCATTGGGATAATACAAGTACTTCTTTTCAATCTTACTCAAGCTCAttctcgctctccctctctctttctttgcctTACTCTTGCAAATAAGTGAGTATGATGTATAGGTCAAAGACCATTTGTTTTCCAGCCAATTCATGCCAATATGACACTGCAAAAACTGGACAACAGCTCTTACACAGGCCTGGGCCCATGGATAAACACTGCAGTTGGGGCCAGTTCAATTTCAGAAAAGTCAATTCAGCAGGTGAACCAAATTCAGGGGACGAACACAATTCACAACAAATCTGCTCAGTATTACAATTTAGCGTTTGAGACAGAGCATCTCCTGAACTATACACAGAAACTCTCTCCTTCTCCATCTATGGGGTGTGATTTTGGGGGGCCCAACTGATATTGTGTAGAGATAAGCCTTTACAATATGTTAACATTTCATATTGAAGGCACATTAGCTTATTGTTTTCATGCCGAAATTGGGGGAATAAATTGCAGTGTAAAtttatatcagaaaaaaaaataaaacaaaattctaACAATGGAaaggttctttttttatttcttcaaagACTGTTTTGATTTCTGacattttaaaaggtaaaagagcaaaaaaacagcatgatGATAGAAATCATGCTAGACGTTTAACAAATGGAATCTTGTGGATCTACGATACTCTAGGATAATGCTTGTAGTGATAATCTGGGACATTCTTCTGATTTTCCTGAGGAAACCctctcaaatatttatttatctatctatatattggTAGGAATTGCCTTAAAACACTAGTAAAGATTGTTA

Function

symbol description
tdh2 Predicted to enable L-threonine 3-dehydrogenase activity. Predicted to be involved in threonine catabolic process.

NR:

description
PREDICTED: L-threonine 3-dehydrogenase, mitochondrial-like

GO:

id name namespace
GO:0044237 cellular metabolic process biological_process
GO:0050662 obsolete coenzyme binding molecular_function
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K15789 TDH; threonine 3-dehydrogenase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007257581.3 True 4307 mRNA 0.41 9 7609633 7624460

Neighbor

gene id symbol gene type direction distance location
srrm1 srrm1,LOC107659230,LOC107583602,LOC107721297 coding downstream 2003 7593639 ~ 7607630 (-)
clic4 clic4,LOC107721318,LOC107659249 coding downstream 20298 7547452 ~ 7589335 (-)
crybg1 NA coding downstream 64316 7434617 ~ 7545317 (-)
qrsl1 qrsl1,LOC107654864,LOC107716014,LOC107659251,LOC107583393 coding downstream 199283 7390536 ~ 7410350 (-)
iars2 iars2,LOC107654863,LOC107659255,LOC107582886,LOC107583609,LOC107715938 coding downstream 271854 7316546 ~ 7337779 (-)
LOC103025534 LOC108433315 coding upstream 5320 7629780 ~ 7649875 (-)
LOC111193181 NA coding upstream 122646 7747106 ~ 7758203 (-)
kbtbd11 kbtbd11,LOC102794541 coding upstream 187410 7811870 ~ 7820202 (-)
arhgef10 arhgef10,LOC107721185,LOC107716000 coding upstream 201203 7825663 ~ 7925959 (-)
LOC111193126 NA coding upstream 306591 7931051 ~ 7967678 (-)
G78643 NA non-coding downstream 247197 7362219 ~ 7362436 (-)
G78642 NA non-coding downstream 247478 7361774 ~ 7362155 (-)
G78638 NA non-coding downstream 263194 7343165 ~ 7346439 (-)
G78639 NA non-coding downstream 268651 7340679 ~ 7340982 (-)
G78568 NA non-coding downstream 681589 6927373 ~ 6928044 (-)
G78861 NA non-coding upstream 115556 7740016 ~ 7740593 (-)
G78859 NA non-coding upstream 120843 7745303 ~ 7767327 (-)
G78871 NA non-coding upstream 138507 7762967 ~ 7765496 (-)
G78885 NA non-coding upstream 225293 7849753 ~ 7915212 (-)
G78889 NA non-coding upstream 353340 7977800 ~ 7981423 (-)
LOC111193177 kcnh1,LOC108433307,LOC106904951,LOC103476431,LOC102309410,LOC103370850,LOC103137420,LOC101155792 other downstream 388779 7198909 ~ 7220854 (-)
G78297 kdm1a other downstream 2423275 5184792 ~ 5186358 (-)
G78083 NA other downstream 3403249 4045434 ~ 4206384 (-)
G78023 scfd1 other downstream 3769063 3834562 ~ 3840570 (-)
prkd1 prkd1,LOC107590910,LOC107719483,LOC107733145 other downstream 3895276 3645097 ~ 3714357 (-)
LOC111193183 NA other upstream 851937 8476397 ~ 8517648 (-)
spdya spdya other upstream 1008186 8632646 ~ 8641832 (-)
LOC111193185 stac,LOC107715935,LOC107670884 other upstream 1026168 8650628 ~ 8655017 (-)
LOC103027354 LOC103027354,LOC108438753 other upstream 2410226 10034686 ~ 10071884 (-)
LOC103027264 NA other upstream 2670028 10294488 ~ 10336716 (-)

Expression


Co-expression Network