qrsl1 (qrsl1,LOC107654864,LOC107716014,LOC107659251,LOC107583393)


Basic Information

Item Value
gene id qrsl1
gene name qrsl1,LOC107654864,LOC107716014,LOC107659251,LOC107583393
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 7390536 ~ 7410350 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007257588.3
TCGGGTCAGCATGGAGCAAACATGTCAGCGCCCTGTAGAGAAGTGATAGTGTAAATTTGcgagaataaaagagaataaaagccGTTTTCTGAAGTAATGCTGGGCACCACCATAAGAGAGGTTTCGCTGGCCTTGAGAGAAGGGAGGTTGTCGGCCACAGAGCTGTGTAAAAAATGCCTGAAGCGCATCAAGAAGACACACTACCTCAACTCTTTCATCACAGTCACAGAGGAGCTGGCCATGAAACAGGCACAAGAGGCTGAGCACAGGCTGCTGCGAGGTAAGCCTCATGGCCCACTGGATGGTGTTCCCTTCTCTGTTAAAGACAATTTCTGCACGGAAAACATCGAGACCACCTGTGCCTCCCATATGCTTAAagGTTATTGTCCTCCATTCAACGCCACAGTCGTGCAGAAGTTATTGGATCAGGGCGCTGTGCTCGTAGGGAAGACCAATTTAGATGAGTTTGCCATGGGGTCGGGCAGTACAGATAGTGTGTTCGGTCCAGCCCGGAACCCCTGGAGTTACACTAGCTCGTACCGTGAGCAGAGCCCGGAGCAGGATCCTGACTCTGATTGGGTGATCACCGGCGGGAGTTCTGGAGGAAGTGCGGCTGCTGTGGCATCTCTCAGCAGCTTCATGGCATTGGGGTCCGACACAGGAGGCTCCACCCGTAACCCTGGCTCGCTGTGTGGGGTGGTGGCCCTGAAACCCACCTATGGCCTGCTCTCCCGCCACGGCCTCATCCCTCTGGTCAACTCCATGGACGTCCCGGGTATTATCACCAGGAGTGTACAAGATGCAGCCACTGTGCTGGGTGTCCTCCAGGGTCGTGATGAAAAAGACTCAACTACAGTTCAGTTTCCCAACTTAGCCACCAGCCTTCCTGAGGATTTTGACATCAGAGATATTTGTGTCGGCATTCCAAAGGAATACCACGCCCCGGGTCTGTCAGCCGAGACTCTGACGCAGTGGGGGCGCGTGGCGTCCATGTTTGAGCGTGCCGGGGCAAAAGTCAGAGAGGTATCGCTTCCACATACCCAGCACTCCATCGTCTGCTACCACGTGCTCTGCTGCGCCGAGGTGGCATCCAATATGGCTCGCTTCGATGGCCTTGAGTACGGTCACCGGAGTGCAGTGGAGAGTTCGACTGAAGCGCTGTACGCCACCACACGCCATGAGGGCTTCAACCACGTGGTCCGCACACGAATCCTCTCAGGAAACTACTTCCTGTTAAAACAAAACTACGACCGTTACTTTGTAAAGGCCCAGCAGATCAGGCGTCTGATTGCAGAAGATTTTCGCCGCGTTTTCCAGTCAGGCGTTGATGTGCTTCTCACGCCCACGACGCTGAGCGACGCAGCGCGCTATTCCGACTTCATCCAGGAAGACAATCGCACACGCAGCGCCCAGGAAGACATCTTCACTCAGCCAGTCAACATGGCAGGTCTTCCTGCTGTTTCTGTACCAACAGCCCTCTCAAGTAGAGGCCTTCCCCTCGGGCTGCAGCTGATTGGACAGTCCTTCCAGGACATGAAGATGCTGACGGTGGCCTATTGGATGGAGCAGCAGCTCGGCTTCCCCATCATCCGTTTCCATGATGCGGCGGAGCGGAACACGGATGAACGGGACCAGGGGGAAGAATGCAAATTGAGGTCTTGAGtgataacagagagagagagctgtattGCTTTAATACAGATGCAAACTGAGCTCATATGTTTTTAGAGCTAATTTGCATTTGGTTTTTCACATCCTGTACAGTGTATGTCTGATATTCAGTCTGTTTGACATCATGGCTGATTTATGAAGATTAGAGTGCATACTGCTGCACACTCCCAACAATGGGAGTCAATGCCAATGAAATGCTAAAAGGCCCAATGACACGGATTGCACACAGATTGCAATGGTTTGCAAATCTCATTgacctgtattttttattaacattggaaacaaaaacacatatctGATGTTTAAAGTGATTTATTACAATTGGGTGGCATCCAAaaatttgtatatttaaaaataaaagcagtttGCATATAAATGACTGTGtttaaaaagagcattttaaagAGGCAAAGTCTTTAAACAATCTGTGAAACACATAGTGGAACATTTGCAGAAAAATGACTTTGGATTTCCCACCATCTACAACCCATAATATCATtgaatgctggtgatcttcggaCCAGTTCTAAATGAGTACTTTGTTGCAGGGCTGTGTTTACTTTTGTGTAtataaaattgaataaatatttgatcccaaaaaaa
>XM_022672654.1
GTCGACATCATAATAAACCCGGTGTGTTAAAAATGGGATGTCTCTCAAGTTCATATGCATGTGAAAGTAAGCCTCATGGCCCACTGGATGGTGTTCCCTTCTCTGTTAAAGACAATTTCTGCACGGAAAACATCGAGACCACCTGTGCCTCCCATATGCTTAAagGTTATTGTCCTCCATTCAACGCCACAGTCGTGCAGAAGTTATTGGATCAGGGCGCTGTGCTCGTAGGGAAGACCAATTTAGATGAGTTTGCCATGGGGTCGGGCAGTACAGATAGTGTGTTCGGTCCAGCCCGGAACCCCTGGAGTTACACTAGCTCGTACCGTGAGCAGAGCCCGGAGCAGGATCCTGACTCTGATTGGGTGATCACCGGCGGGAGTTCTGGAGGAAGTGCGGCTGCTGTGGCATCTCTCAGCAGCTTCATGGCATTGGGGTCCGACACAGGAGGCTCCACCCGTAACCCTGGCTCGCTGTGTGGGGTGGTGGCCCTGAAACCCACCTATGGCCTGCTCTCCCGCCACGGCCTCATCCCTCTGGTCAACTCCATGGACGTCCCGGGTATTATCACCAGGAGTGTACAAGATGCAGCCACTGTGCTGGGTGTCCTCCAGGGTCGTGATGAAAAAGACTCAACTACAGTTCAGTTTCCCAACTTAGCCACCAGCCTTCCTGAGGATTTTGACATCAGAGATATTTGTGTCGGCATTCCAAAGGAATACCACGCCCCGGGTCTGTCAGCCGAGACTCTGACGCAGTGGGGGCGCGTGGCGTCCATGTTTGAGCGTGCCGGGGCAAAAGTCAGAGAGGTATCGCTTCCACATACCCAGCACTCCATCGTCTGCTACCACGTGCTCTGCTGCGCCGAGGTGGCATCCAATATGGCTCGCTTCGATGGCCTTGAGTACGGTCACCGGAGTGCAGTGGAGAGTTCGACTGAAGCGCTGTACGCCACCACACGCCATGAGGGCTTCAACCACGTGGTCCGCACACGAATCCTCTCAGGAAACTACTTCCTGTTAAAACAAAACTACGACCGTTACTTTGTAAAGGCCCAGCAGATCAGGCGTCTGATTGCAGAAGATTTTCGCCGCGTTTTCCAGTCAGGCGTTGATGTGCTTCTCACGCCCACGACGCTGAGCGACGCAGCGCGCTATTCCGACTTCATCCAGGAAGACAATCGCACACGCAGCGCCCAGGAAGACATCTTCACTCAGCCAGTCAACATGGCAGGTCTTCCTGCTGTTTCTGTACCAACAGCCCTCTCAAGTAGAGGCCTTCCCCTCGGGCTGCAGCTGATTGGACAGTCCTTCCAGGACATGAAGATGCTGACGGTGGCCTATTGGATGGAGCAGCAGCTCGGCTTCCCCATCATCCGTTTCCATGATGCGGCGGAGCGGAACACGGATGAACGGGACCAGGGGGAAGAATGCAAATTGAGGTCTTGAGtgataacagagagagagagctgtattGCTTTAATACAGATGCAAACTGAGCTCATATGTTTTTAGAGCTAATTTGCATTTGGTTTTTCACATCCTGTACAGTGTATGTCTGATATTCAGTCTGTTTGACATCATGGCTGATTTATGAAGATTAGAGTGCATACTGCTGCACACTCCCAACAATGGGAGTCAATGCCAATGAAATGCTAAAAGGCCCAATGACACGGATTGCACACAGATTGCAATGGTTTGCAAATCTCATTgacctgtattttttattaacattggaaacaaaaacacatatctGATGTTTAAAGTGATTTATTACAATTGGGTGGCATCCAAaaatttgtatatttaaaaataaaagcagtttGCATATAAATGACTGTGtttaaaaagagcattttaaagAGGCAAAGTCTTTAAACAATCTGTGAAACACATAGTGGAACATTTGCAGAAAAATGACTTTGGATTTCCCACCATCTACAACCCATAATATCATtgaatgctggtgatcttcggaCCAGTTCTAAATGAGTACTTTGTTGCAGGGCTGTGTTTACTTTTGTGTAtataaaattgaataaatatttgatcccaaaaaaa

Function

symbol description
qrsl1 Predicted to enable glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity. Predicted to be involved in glutaminyl-tRNAGln biosynthesis via transamidation and mitochondrial translation. Predicted to act upstream of or within translation. Predicted to be part of glutamyl-tRNA(Gln) amidotransferase complex. Predicted to be active in mitochondrion. Human ortholog(s) of this gene implicated in combined oxidative phosphorylation deficiency 40. Orthologous to human QRSL1 (glutaminyl-tRNA amidotransferase subunit QRSL1).

NR:

description
glutamyl-tRNA(Gln) amidotransferase subunit A, mitochondrial

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005739 mitochondrion cellular_component
GO:0005524 ATP binding molecular_function
GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor molecular_function

KEGG:

id description
K02433 gatA, QRSL1; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007257588.3 True 2274 mRNA 0.49 11 7390536 7410350
XM_022672654.1 False 2060 mRNA 0.49 10 7390536 7405973

Neighbor

gene id symbol gene type direction distance location
iars2 iars2,LOC107654863,LOC107659255,LOC107582886,LOC107583609,LOC107715938 coding downstream 52757 7316546 ~ 7337779 (-)
LOC111193180 NA coding downstream 112752 7276400 ~ 7277784 (-)
LOC103026718 kcnh1a,LOC108433307,LOC107721370,LOC107659257 coding downstream 196946 7091045 ~ 7193590 (-)
acss1 NA coding downstream 427108 6929770 ~ 6963428 (-)
LOC103025187 crip3,LOC107583529,LOC107744353,LOC107553273,LOC107717123,LOC107663266 coding downstream 466481 6894928 ~ 6924055 (-)
crybg1 NA coding upstream 24267 7434617 ~ 7545317 (-)
clic4 clic4,LOC107721318,LOC107659249 coding upstream 137102 7547452 ~ 7589335 (-)
srrm1 srrm1,LOC107659230,LOC107583602,LOC107721297 coding upstream 183289 7593639 ~ 7607630 (-)
LOC103026256 tdh2,LOC108433314,LOC107582959,LOC107583601,LOC105896089,LOC107721289,LOC107659247,LOC108269662 coding upstream 199283 7609633 ~ 7624460 (-)
LOC103025534 LOC108433315 coding upstream 219430 7629780 ~ 7649875 (-)
G78643 NA non-coding downstream 28100 7362219 ~ 7362436 (-)
G78642 NA non-coding downstream 28381 7361774 ~ 7362155 (-)
G78638 NA non-coding downstream 44097 7343165 ~ 7346439 (-)
G78639 NA non-coding downstream 49554 7340679 ~ 7340982 (-)
G78568 NA non-coding downstream 462492 6927373 ~ 6928044 (-)
G78861 NA non-coding upstream 329666 7740016 ~ 7740593 (-)
G78859 NA non-coding upstream 334953 7745303 ~ 7767327 (-)
G78871 NA non-coding upstream 352617 7762967 ~ 7765496 (-)
G78885 NA non-coding upstream 439403 7849753 ~ 7915212 (-)
G78889 NA non-coding upstream 567450 7977800 ~ 7981423 (-)
LOC111193177 kcnh1,LOC108433307,LOC106904951,LOC103476431,LOC102309410,LOC103370850,LOC103137420,LOC101155792 other downstream 169682 7198909 ~ 7220854 (-)
G78297 kdm1a other downstream 2204178 5184792 ~ 5186358 (-)
G78083 NA other downstream 3184152 4045434 ~ 4206384 (-)
G78023 scfd1 other downstream 3549966 3834562 ~ 3840570 (-)
prkd1 prkd1,LOC107590910,LOC107719483,LOC107733145 other downstream 3676179 3645097 ~ 3714357 (-)
LOC111193183 NA other upstream 1066047 8476397 ~ 8517648 (-)
spdya spdya other upstream 1222296 8632646 ~ 8641832 (-)
LOC111193185 stac,LOC107715935,LOC107670884 other upstream 1240278 8650628 ~ 8655017 (-)
LOC103027354 LOC103027354,LOC108438753 other upstream 2624336 10034686 ~ 10071884 (-)
LOC103027264 NA other upstream 2884138 10294488 ~ 10336716 (-)

Expression


Co-expression Network