wdr20 (wdr20)


Basic Information

Item Value
gene id wdr20
gene name wdr20
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 4368394 ~ 4379640 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007258896.3
GCTTGGGCCAGGATGAATGCAAATTTCAAAGATGGCGGCGGAGGGAGGAGGGAAGGAGATGAACGAGATCAAAACTCAGTTCACGACCAGAGAAGGCGCGTACAAACTCCTCACGCACTCCGAGTACAGCCGCCCCAACCGGGTGCCTTTCAATTCGCAGGGCTCCAACCCCGTCAAGGTCTCGTTTGTCAACGTAAACGACCAGTCCGGCAACGGCGACCGAATCTGCTTCAATGTGGGCCGGGAGCTGTATTTCTACATCTACAAAGGCGTCCGAAAGGCTGCAGATCTAAGCAAGCCAATAGACAAGAGGATATACAAGGGAACGCAGCCCACCTGCCATGACTTTAATCACCTTACTGCCACGGCTGAGAGTGTATCTCTGTTGGTGGGTTTCTCAGCTGGTCAGGTACAGCTTATTGACCCCATCAAGAAGGAGACAAGCAAGCTCTTCAATGAagaaAGACTAATAGATAAATCTAGAGTGACTTGTGTAAAATGGGTGCCAGGCTCTGAGAGTCTCTTCCTTGTAGCTCATTCCAGTGGAAACATGTACTTGTATAACGTGGAGCATACATGCGGCACGACGGCCCCTCACTACCAGCTGCTGAAGCAGGGCGAGAACTATGCTGTGCACACGTGCAAGAGCAAATCCACGCGCAACCCTCTGCTGAAGTGGATGGTGGGTGAGGGGGCACTGAACGAGTTTGCCTTTTCTCCTGACGGGAAGTTCTTGGCCTGCGTTAGTCAGGACGGCTTCCTTCGCGTGTTTAACTTTGATGCCGTGGAGTTGCACGGGACCATGAAAAGCTACTTTGGGGGGCTGCTTTGTGTCTGTTGGAGCCCCGATGGGAAGTACATTGTTGCGGGCGGGGAGGACGATCTAGTGACTGTGTGGTCTTTCGTGGACTGTCGAGTTATAGCGCGGGGCCACGGTCACAAATCGTGGGTAAGCGTGGTGGCTTTCGATCACTACACCACGAGCGTGGAGGAGAGCGACCCCATGGAGTTCAGCGGGAGCGACGAGGACTTCCAGGACCAGATCCACTTCGGACGCGACCGGGCCAACAGCACGCAGTCTCGTCTCTCCAAGCGCAACTCTACGGACAGCCGGCCGGTCAGCGTCACGTACCGCTTCGGCTCGGTGGGTCAGGACACTCAGCTGTGCCTGTGGGACCTCACAGAGGACATCCTGTTCCCTCACCTCCCCTTGTCTCGAACCAGGACCCACACCAACGTCATGAACGCTACCAGTCCCCCGGCCACGGGAAGCGGAGGAAGCGGGAGCAGCACCGTCGTCACGACAACGACGACGACGACAAATAATCCCAGCACGAACGGCAGCAACAACAGCGGCACCAACACGCCGGGGAACTCGCTGCCCACGCCGCTGCCGCGTTCCAACAGCCTACCGCACTCAGCGGCCGCAACCACCGGCAACAGCAGCAAAAGCAGCGTGATGGACAACGCCATCGCTTCGGGCGTCAGCAAGTTCGCCACGCTCTCGCTGCACGACCGTAAAGAACGCCACCACGAAAAGGACCACAAGCGCAACCACAGCATGGGCCACATCAGCAGCAAGAGCAGCGACAAGCTCAACCTGCTCACCAAAACCAAAACGGACCCAGCCAAGACGCTGGGCACTCTGCTGTGCCCACGCATGGAGGATGTACCCCTGCTTGAGCCACTCATCTGCAAAAAGATAGCACACGAGAGACTCACTGTTCTCATCTTTCTAGAGGACTGTATAGTCACCGCTTGTCAGGAGGGATTTATTTGCACATGGGCGAGGCCTGGCAAAGTGGGTTTATTGTCATCCCAAAACCAAGCCAGCTCTCCCAGTGGAACAGTAGTATAGCCACAATATTTCTGCTGCTAAGAACCCTGCATCACGCCGCTGTCACATAGAGAGCCCTGTGCTGCTCTTCACTTCatcgtttatttgtttatttgccaGCCCCTCCCCCTTTCATTTCTTAAATTCAATTGTTATTGGTTGCCTCACATGGTCTGCTTGCATGGTAGACTTGCTAATACTGTGCACAAATGGAAATGGTGTGGTGCAatgataaacttttttttttttttttttaaggaagaaatgtatttattttttttttctttacacacatttcactgtttttctttcctgaAGTGAGAAAATAAGCGTCAAACCGATCAGCCTTTGACCTTAGTAAACTGATGAAGGGGGGGTGGGTTGGGCAAGAGGTTGAAATCAGGGGCAGAGAGAATCCAAGGACTTGCTTCCATCCAAATTCCTTTTTCCTAAGATTTTTGTTTTCTCCTTCACATGGAATAGATTCTCCCCCATTAAGAACtttgcactgattttattttgGTTGTCTATTTTGTAACAAACTACTCTCTaggataaaaataaagacaaaaaagaagaaaggttTGGGGATGGCCTTGATGCACTCGGCTTTAATATCCTCTGTCTTGAAATTTGAATCTGAAAAAGCTGGATGCTGcaatcatagtttttttttttgttttttcttttttttgaaagaaaatttGTTTGCACTTAATAGTTTATTAGAAGAGAATGGCTTTACATTGTGTGTGCAAGGACTCACAGACTGATTTAAGGTGGAGAAATacgaaatgataaaaaaaaactttgtatctattgagcatttattttaatattgtttcaGATTAAAATCTGCtttgtattatatgtataatattgtaattcagTGATTAATGGGGCAAAAGCAAATGATCAGTACTACTCTAGTGGACGTTTTGTCATCATTAaagaaaatagtgatttctaaagcagaaaaatatacatattaataatattaaaaaaatcttgaata

Function

symbol description
wdr20 Predicted to be located in nucleoplasm.

NR:

description
PREDICTED: WD repeat-containing protein 20

GO: NA

KEGG:

id description
K24741 WDR20; WD repeat-containing protein 20

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007258896.3 True 2852 mRNA 0.48 4 4368394 4379640

Neighbor

gene id symbol gene type direction distance location
nemf nemf coding downstream 15146 4330782 ~ 4353248 (-)
lrr1 lrr1,LOC102779237 coding downstream 48035 4314291 ~ 4320359 (-)
pole2 pole2 coding downstream 70236 4289503 ~ 4298158 (-)
mdga2 mdga2,mamdc1 coding downstream 90573 4047063 ~ 4277821 (-)
mis18bp1 NA coding downstream 361784 3994560 ~ 4006610 (-)
dync1h1 dync1h1 coding upstream 8765 4388405 ~ 4454570 (-)
LOC103042641 dio3 coding upstream 132334 4511974 ~ 4514109 (-)
dlk1 NA coding upstream 155288 4534928 ~ 4542877 (-)
wdr25 wdr25 coding upstream 211728 4591368 ~ 4598900 (-)
slc25a47 NA coding upstream 234072 4613712 ~ 4616794 (-)
G78143 NA non-coding downstream 37779 4329092 ~ 4330615 (-)
G78140 klhdc2 non-coding downstream 40746 4326980 ~ 4327648 (-)
G78131 NA non-coding downstream 58757 4307517 ~ 4309637 (-)
G78087 NA non-coding downstream 253289 4114772 ~ 4115105 (-)
G78054 NA non-coding downstream 355385 4012752 ~ 4013009 (-)
G78241 NA non-coding upstream 58947 4438587 ~ 4518310 (-)
G78265 wars,LOC107088074 non-coding upstream 228268 4607908 ~ 4609149 (-)
G78266 NA non-coding upstream 230366 4610006 ~ 4647983 (-)
G78279 NA non-coding upstream 797435 5177075 ~ 5178793 (-)
G78296 NA non-coding upstream 809368 5189008 ~ 5204565 (-)
G78083 NA other downstream 162010 4045434 ~ 4206384 (-)
G78023 scfd1 other downstream 527824 3834562 ~ 3840570 (-)
prkd1 prkd1,LOC107590910,LOC107719483,LOC107733145 other downstream 654037 3645097 ~ 3714357 (-)
G77892 NA other downstream 1019405 3297582 ~ 3348989 (-)
bmf bmf other downstream 1161708 3175798 ~ 3206686 (-)
G78297 kdm1a other upstream 805152 5184792 ~ 5186358 (-)
LOC111193177 kcnh1,LOC108433307,LOC106904951,LOC103476431,LOC102309410,LOC103370850,LOC103137420,LOC101155792 other upstream 2819269 7198909 ~ 7220854 (-)
LOC111193183 NA other upstream 4096757 8476397 ~ 8517648 (-)
spdya spdya other upstream 4253006 8632646 ~ 8641832 (-)
LOC111193185 stac,LOC107715935,LOC107670884 other upstream 4270988 8650628 ~ 8655017 (-)

Expression


Co-expression Network