LOC103025430


Basic Information

Item Value
gene id LOC103025430
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 10637848 ~ 10640240 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015602685.2
TGAGCAGAAGACCGGGCGGTTTGGACTAAAGCAGGAGAGCTGCTGCCTTACAGCACTGCTGATTACTGACTACTCTACTGAAACTGAGGgaaaactccacccagaccCTGCCATGCGCAGATCTTCTCTTTTTTAGGGATATTTCATGAGTTCAGCAAGTGTCCTCCACATCTTCAATCCCACGATGCCAGGTCCAGTCATGCCAGTGGACGTTGCAGTGCAGCTGTACATCGCCCACTCGCCACCCCTTCGCAGCTTCCTCAGTTCCTATGAGGACTGCAGGGCCCGAAACCGGGCCAACAACTGCTTCAAGCCCCTGCGGCCGTGCCTCAGCACCAAGGCCCCTCCGGAGCCACCCTGCCTGGTGTGGCAGTCGTCTAAAAGCAAATCCAAGAAGAGGGTGGTGTTTGCTGACTCCAAGGGCATGTCGCTGACTGCCGTCCGCGTCTACTCTCCGTCCAATGGCAGGAACAGCAATGTCTTGTCCCGGCTGCAGTTCAGCCCAGAGCTGAATGGGCTGGAGAGCGCTACAGCTGCCTTGCGCATCCACACGATCCAGAGCAGGGCCCTGGACTTCCCTCAGCCGGCGGGCGACTACCTAGACTTCCGAAGTCGTCTGACCAAGAACTCTGTGTGCCTGGAGAACTGCACCCTGCAGGGGAGGGTGCTGACTGGCACGGTCAAGGTGCGCAACCTGGCCTTCGAGAAGTCCGTCCACATCCGCATCACCTTCGACTCGTGGAAGAGCTACCGGGACTTTGAGTGCACGTACATGAACAACGTGTACGGCTGCCAAAACACAGACACGTTCTCCTTCACTGCGGAGCTGCCCGCGTACGTGCCACCTCAAAACAAGGTGGAGTTTTGCATCAGTTATACCACGGGTGGGCAGACGTACTGGGACAACAATGATGGCAGAAATTACGGACTTGTGGCGGCGGCGTCGACATGGAAACAGGACGATGAATTGAACTCGCCAGAGCCGCAAAAGAAAACGCAAGCCCCTGTTAAGCAGGGGAAGAAGGGAGAGGTGGAGATCGGTCAGTTAAACAGCTCCAACAGCTGGAAAGGACTTTTCCCCGAGTGGCAGAGCTGGGGCTGCATTGAAACCGGTCCCCCCTACTGGTAGTCTAAAGAACTTCAGTCATCCAGTCATCTCAAATGATGATCTGGATGATGTATAGAACTACTTCTGGGAATCTGTTCTGTTCAGAAGCTGGAGCTGCTGTGCTAGAGATAAGCTACATATATATAAGCTACACTAATTATTGCCTAGTTAAGGATGTTTAAATTTACGATCCTCCTTTtggtttaatgtgtttttgtaacCCTGTTTCATTCAAGTGGAACACGACAtgcatgttttattataaaactgatggacccgttttttttttttggcaaccTGCAATTGTTGTTTCTGGCTAATTGCAAATACTGTTTTTGACTAATTGcaagtattgttttaaatataattgcaaATGTTTTTAACGTTTAGCCACTGATAATACTGTTGTTCTACTACAGTTTGATACTTAATCTACCTTTCCTGCACATCTTTTGTATGCTTTTACACCTTGAAAATGCTGCTGTGAACTTTCGAAGGGCGAAGAACTACAAAACAGATTATCAATCTATGCAATTTGATCAGATGATCAACATTCAAATTCCACATTAAACCTCCGAAGTGCTCACAGGGGAGGAACAGCTGACTACCAATAGGACATTCCTTCATATTGAAGGGTTAAACTATATCTTGGTGATGTTGTTGGACGTTTAGGTGACTTCAAGATTTTGCTGTGAAGCTGCAGGCACTCACTGTGAATGAATTACATGGAAATGTGCCAAATAAAGACGATTGTAGGATCTGCAGCAGTGCAGTGGCTCCTCCACACTGCTAGTACTTTTTTAGGGGGATCTGTGGGGTGGGGGATGTATTGGGATGTTGTTGTGTTGCGTTCAGATAGACAGTGCCTTATTTCTGGTGTGTGGATGGTTATCTGTGTAAATGTGGAAATATGTGGTTGAAATAAATGATCACTATTTAGCCTCTAAA

Function

GO:

id name namespace
GO:0005975 carbohydrate metabolic process biological_process

KEGG:

id description
K07189 PPP1R3; protein phosphatase 1 regulatory subunit 3A/B/C/D/E

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015602685.2 True 2056 mRNA 0.48 2 10637848 10640240

Neighbor

gene id symbol gene type direction distance location
LOC103026375 ankrd1,LOC107583650 coding downstream 148994 10477662 ~ 10488854 (-)
LOC103026970 NA coding downstream 162379 10428385 ~ 10475469 (-)
ythdf2 ythdf2,LOC107721611,LOC107654833,LOC107697702 coding downstream 415445 10205135 ~ 10222403 (-)
msra msra,si:ch1073-358c10.1 coding downstream 466078 10133982 ~ 10171770 (-)
id3 id3 coding downstream 550808 10084208 ~ 10087040 (-)
fgfbp3 NA coding upstream 40916 10681156 ~ 10684935 (-)
LOC103026670 LOC103026670,LOC108430189 coding upstream 75127 10715367 ~ 10717840 (-)
LOC103040295 LOC108430229 coding upstream 150404 10790644 ~ 10798802 (-)
rasgrp3 rasgrp3,LOC107744459,LOC107670874,LOC107689794,LOC106576952 coding upstream 182642 10822882 ~ 10936263 (-)
LOC111193129 NA coding upstream 564887 11205127 ~ 11208684 (-)
G79533 NA non-coding downstream 2755 10634500 ~ 10635093 (-)
G79515 NA non-coding downstream 80390 10506347 ~ 10557458 (-)
G79514 NA non-coding downstream 80980 10516926 ~ 10556868 (-)
G79357 NA non-coding downstream 336555 10301069 ~ 10301293 (-)
G79347 NA non-coding downstream 377966 10259602 ~ 10259882 (-)
G79602 NA non-coding upstream 570811 11211051 ~ 11217908 (-)
LOC111193138 NA non-coding upstream 731839 11372079 ~ 11375380 (-)
G79633 NA non-coding upstream 874849 11515089 ~ 11515665 (-)
G79642 NA non-coding upstream 893338 11533578 ~ 11535398 (-)
G79644 NA non-coding upstream 895553 11535793 ~ 11536344 (-)
LOC103027264 NA other downstream 301132 10294488 ~ 10336716 (-)
LOC103027354 LOC103027354,LOC108438753 other downstream 565964 10034686 ~ 10071884 (-)
LOC111193185 stac,LOC107715935,LOC107670884 other downstream 1982831 8650628 ~ 8655017 (-)
spdya spdya other downstream 1996016 8632646 ~ 8641832 (-)
LOC111193183 NA other downstream 2120200 8476397 ~ 8517648 (-)
G79582 NA other upstream 288400 10928640 ~ 10929596 (-)
ltbp1 ltbp1 other upstream 301447 10941687 ~ 11183941 (-)
G79865 NA other upstream 1329201 11969441 ~ 11971939 (-)
G79945 NA other upstream 1517346 12157586 ~ 12192028 (-)
ncmap NA other upstream 1694159 12334399 ~ 12372804 (-)

Expression


Co-expression Network