LOC103040295 (LOC108430229)


Basic Information

Item Value
gene id LOC103040295
gene name LOC108430229
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 10790644 ~ 10798802 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015602848.2
CGAGGAGTGTGGATTTGGGACGCAGCCCGTGTAGCTGAGCAGTGCTGTGATCTACATTACCTGCAGGTGAGCAGAATCACAACACAGACTCATTCATTAACACACTCATTAACTTCTTTAAGATAAATTATGGAGCTAAAGTCTGATAGTGGAGTAAAAAGCGCTGCTGGGATAGTTTAGCGTTAGTTTGCTGGTGAGGACTAAATGCCTGAATTACAGTGGagacttagcttagtttagcctagcctagcgTTAGTTTAGCTGCAGCTAATCTCCCACAGAAACAGCGGAGTGGTTATTTTATCTAGGCGAGCTGAAGGTACGGAGATGTATTCCAGACCCCCAAACCCGAACTACCACCGGCCGCCCTTTCACCAGAGACCCCCGTTTCCCCCCGGCGGCGGCGGACAACCTCCCTTTTCAGACCCGTATAACAGGCCGCCGTTCCCCCCACCGTACCGGGGAGCTCCGCCGCGGCCCCCGCCTCCGTACCGGGGATCCGGTCCCGAGAGCTTCAGCGGAGCGGCGACCAGAGACCCGTATTACGAGGTACCACCTCCAAACCAGTTCCAGCACAGTCAGCCTCCTCAGGGATGGTCGGTCCAGCAGACGGATCTGCAGAGTCTAGAAGTGAGGAAAAAAGCAGAAGAGTTCCTCCGGATCCTGGAAGCCAAAGACAAGCTGGAGCTATCTGGTCAGTCTGGTGAAAAGAACACCAGAAGGCAGAGCCAGGATGATGAAACGGAAAACCACAACTCTGAGAAGCACTCAAGCACGCGGAGCAAAAGCCGGGCCAGGAGCCGTGGACGCAGCAAAAGCAGACACCGCAGCCGGAGCCGCAGTCGGAGCCGGGGAAAGAGTCGCGCCAGGAGCCGCAGCCGAGGAAGAAGTCGGGCAAAGAGCAGAGCAAAAAGCCGGGCGAGGAGCAGAAGCCGAAGCCGCAGTCGCAGCCGTAGTCGCGGGAAGAGTCGCACCAGAGGGAAAAGCCGTGCTCGCAGCCGCGAGAAGACTGAGTCAAGGAGTAAAAGCCAGCCACGGATACAGTCAAGTAAAGACTCTCATTGGAGTGTGAAGGAGCTCAGTGGTATCAGTAATACCAGTAGCAGTAGAGGGAGTCCACCTGACAGCACGGTACCAGACCTTTTCCAGGGCCTAAGACAAGTTCTGCAGAGCAAGGAGCTGGAGAAACATCTGTCTGTGGCCAAAGGAGCACTGTTGTGGAATCAGATCTCAAATGAACCAAGAGAAATACAGGAGCACAAGCCTGCAGTTGAAAGCTTCCCGAGAATTCCAGAATTTCATCAGAACTTGTATGATCCTGAAATGCCCACTGGCTTCAGCCAATCTGGTCTACTTCCTCACGAGCGAATCGGTGAGGGTGGCAATTCCTTCCCCCGGATCTTATCCTGGGACGACCCCAGCCAGCAGACAGAGGTCAAGCCCATGTTCCCAAACattgaggatgaggaggagttCCTTTAtggagaggaagaagagaggACTAAACCTCAAGCCGTCACTGTCCCTCTGGCCCAGACCAGACCAATAGAGTCTCCAGTAGAAACAGTGTTTTCTCCAGCACAGACCCCATATCTGACCCAGACTATTCTCAGCCAGACCTCCAATCTTCACGAGCCGCATGCTCAAGCTGTGGCCAGCAAGCCGCCCACAAACAGTGCAAATGTGGCCCCTGAGGACTGTGAGAAGGTGAAAAACATGCTAAAGACTATTGGTTTGAACCTCAGCATGACTGATCTTAGTAAGATGGCAGCTAGACTGAAGCAGAAGAAGGAGGAGCAGAAAGCAACGTCTCCAGCTGCTGGGTTGGCGTTGCTCAAACCTGCCCTTGAAGCTCTGCAGGCTTTGTCTAAAGCACCCAAATCTGATGACAGTCGAAGTAATCGTTCTGGAAGCAGCCATTCACACAAGGACTCACGAGAAGATCACAAAGAAAAGcGGAGtgaggagaaggagaggaggGAGAAACAGATCCAGTTGAAGAGGAAAGAGTATTTGGTGAAGGAGCTGGAGGGGCTGCTGAAGCAGGAAGGATCAGGCGATTTGATCCCAGTTATAGGTTTCTTCTGTCAGCGGTGTGAAGAGTTCTTTGGGGATCTGAATAGTGCTGAGGGCCACATTGCTTCCCACAGACGCAGCGACGCACAAAAGAAGGCAATGTTGGATCAGCACGACCGACACAAAGACAAAAGGCACGGAGAGCGTCATCAAAGGCCGTCGCAGTCTGACCTCAGAGAAAGACCACCAGTCCAGGACAAACGGTCAGCAGCTTCCCGCATCTACCAGGATTACCGTGAGCGCAGCCCagaaaagaagagagtgagggagaagaGCCCCCAATCACACTCATCCTCATCCCACGGGACAGAACCAAGCAAGGCCAAATCAGAATCCGAGAAGATGGAAAGCCACGAGGAGAGCAAGGACAAATCCGAGGATGCGGAATCAACCAAgagtgagaagaagaaaaagaagaaggaaaagaaattgaagaaaaaggaaaaaaagaaagagaagaagaagaaaaaggagaaggaCAAGGAGGCTGCTATTTAATGGAAGGGCTTCATGGTTAGAATGTACATTTGGAATTGGACCTTTGGCCTGACCAGACATTGATTGCGAGAATTCTtatgttaagttttttttttttttttttttttttttttttaaacagttcagCCTTTACACAAACAAGTTATTTACAGGATTGGCTCCTGTAGGTTTTGTCTGAACCTGATGAAGCATCATGTGTTGGATGTTGAGGCAGTATGTACATATATGGTCTAGGTTTCAACCAATGCTCGTGTATTGCATAGCCGCCATGGTTCTATTCCCTTGTTCTATAAAAAGAAGAAAGCCTTAAATGCCCACCACATTGTGAAATTAGCAACCTGAGTATGCACAGTGGGGACCAGAGGCTGAGGTGGGCTCCCCTACTTGTTTGGTTCACCCCAGCtctaatctgaaaaaaatgtcCATTGACCCAGTTCATCTGTATGTGTAATGTTTCAACAGCAGAACTGCAGTTCATGTATTACATTACAGTTGCAGTACAGGAGTATTTGATTCCGGTCCAGACCAgaacacagataaaaaaaattaccctGTCAATCATTTCATTTCTAGGTTTAACCCCACCCTAAAAACACTTCTGAGgggaagttttaaaaaaattccACACTGTAGACTGgaaaaaagaggggaaaaaataaaaaaattgctgcTTAACATTAAAGCATATGAGGTTGGGTGGAGCTACACATCacactgcaaccagccagcagaggctcTAGATCTGTGGTAGCTTCACTTCTGAGAGATGTTTTGCTGCCCatgctgacatttttttttaaacctggctGTGTTTATATGTGCTATGTAGCAGTTTATTCCAGCCCTGTTCacaaatcaacattcatttcttGCCTCAATAATTGCCTGAGGTTAGTACAGTATTGAATGTGGATTTGCTGTTTCTGTTAGTACAGCTGAAATTCCACAAAATTCAGTCATTAATGATTTGCCTTTGAGTTAGACACATGTCCCAGATTTAATACTcattttggtttatttgttattttattcagtacTGTTTAAAACGGTGTTGCATTTGGTTCTTTATAGGAAAATAAAGAAGCCATTCTTGCACCCAA

Function

NR:

description
PREDICTED: serine/arginine repetitive matrix protein 5-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015602848.2 True 3674 mRNA 0.48 8 10790644 10798802

Neighbor

gene id symbol gene type direction distance location
LOC103026670 LOC103026670,LOC108430189 coding downstream 72804 10715367 ~ 10717840 (-)
fgfbp3 NA coding downstream 105709 10681156 ~ 10684935 (-)
LOC103025430 NA coding downstream 150404 10637848 ~ 10640240 (-)
LOC103026375 ankrd1,LOC107583650 coding downstream 301790 10477662 ~ 10488854 (-)
LOC103026970 NA coding downstream 315175 10428385 ~ 10475469 (-)
rasgrp3 rasgrp3,LOC107744459,LOC107670874,LOC107689794,LOC106576952 coding upstream 24080 10822882 ~ 10936263 (-)
LOC111193129 NA coding upstream 406325 11205127 ~ 11208684 (-)
ttc27 ttc27,LOC107689788 coding upstream 421561 11220363 ~ 11363208 (-)
birc6 NA coding upstream 594959 11393761 ~ 12501284 (-)
pdzd8 pdzd8 coding upstream 843788 11642590 ~ 11808582 (-)
G79533 NA non-coding downstream 155551 10634500 ~ 10635093 (-)
G79515 NA non-coding downstream 233186 10506347 ~ 10557458 (-)
G79514 NA non-coding downstream 233776 10516926 ~ 10556868 (-)
G79357 NA non-coding downstream 489351 10301069 ~ 10301293 (-)
G79347 NA non-coding downstream 530762 10259602 ~ 10259882 (-)
G79602 NA non-coding upstream 412249 11211051 ~ 11217908 (-)
LOC111193138 NA non-coding upstream 573277 11372079 ~ 11375380 (-)
G79633 NA non-coding upstream 716287 11515089 ~ 11515665 (-)
G79642 NA non-coding upstream 734776 11533578 ~ 11535398 (-)
G79644 NA non-coding upstream 736991 11535793 ~ 11536344 (-)
LOC103027264 NA other downstream 453928 10294488 ~ 10336716 (-)
LOC103027354 LOC103027354,LOC108438753 other downstream 718760 10034686 ~ 10071884 (-)
LOC111193185 stac,LOC107715935,LOC107670884 other downstream 2135627 8650628 ~ 8655017 (-)
spdya spdya other downstream 2148812 8632646 ~ 8641832 (-)
LOC111193183 NA other downstream 2272996 8476397 ~ 8517648 (-)
G79582 NA other upstream 129838 10928640 ~ 10929596 (-)
ltbp1 ltbp1 other upstream 142885 10941687 ~ 11183941 (-)
G79865 NA other upstream 1170639 11969441 ~ 11971939 (-)
G79945 NA other upstream 1358784 12157586 ~ 12192028 (-)
ncmap NA other upstream 1535597 12334399 ~ 12372804 (-)

Expression


Co-expression Network