spdya (spdya)


Basic Information

Item Value
gene id spdya
gene name spdya
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 8632646 ~ 8641832 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015607947.2
caaaaaaaaaaatacgtatgttctattttatatatttaaaggaaATAACGGGGTTGTAATTATTGCATGTATTATAGCTAAATGAGCTTTTCCCCAGTGCAGCCTCTGTGCTGTTTATCTAAACTAGCTCTAGGCAGCAAATCAGTCTTTGATAAATCAAATTCAGTCAAATTATATTGAACTAATACCTTTATTACTTAACCCTCCTCAGAAAATTATTCTATTTTATCTTCATATCATCAACACTAAGGAAACATAAACCCAGTTCGAGAGCTCGGCTAAATGATGATGAGGCGCAGCTGGTGTGAGACGCCCCCGGCCATCACCCTGAGGATCAGACCCTCAGCAGCGCTCAACCTCAAGCTCCGGAGAGGCCTCCGCATGAAGAGGCCGAAGCTCCAGGAGGCCCGCGGTCCACCGGGCAAAATCCAACACCAGCACCCGCTTCAACACCAACACCAGCTTCAGCCCCAACACAGCCGAAAACGAGAAGAAATGCCCAGGCCTTGTGAACAACCCTGGGGCTCAACCCTGGTCATCCAGCGCCAAGAGATGGCTGCCTTCTTCAGACTGTTTGATGATGACCTAATACAAGACTTCCTGTGGATGGACTGCTGTTGCAAACTTACAGACAAGTATTTGCTTGCCATGGCCTTCGTCTACTTCAAAAGGGCCCGTTTCAGCATCAGTGAGCACAGCAGGATGAACTTCTTTATCGCTCTATATCTGGCAAACACCatggaggaggatgaggaagagcCGAAATACGAGATCTTTCCCTGGGCTTTAGGGAAGAGCTGGAGGAAGCTTTTCCCTTGCTTTCTGAAGCAGAGGGACAAGCTGTGGGCACGAATCGAGTACCGCGCTGCCGTCAGCCGGCGCTGCTGTGAGGAGGTGATGGCCATTGTTCCATCTCACTTCATCTGGCAGCGTGAGCGTGCTGAGCACCACAGTGGAGCGCAGAGGCAGTACCGGGACCGGGATGAGGTGCACATGCCCCGCGGCCCAGCCGCCTCACCTGAACCCTGTTCTCTCTGTGCCAAAACTGCCGCCATTTCCTCCTTCTCATCCTCCTCCCCTCTACCACTTGCACTGAATCTCAGTTTGGAGTCTACACCACCATCCAAGCACCAGGCTTCAGACCAGCCCAGCAAGAAGACTGCCTGCTACCACTGCATGGACAACCCAGCAGgCAGTGATGTGGACACTGAAGCTGGGCATGACTACTCCATGGACTGGATCAACGAGGAGTAGGTTCCCACTATACATTACCGTAACCAGTATTATCCGTTACCTGTACACATGACTGTCTTACTGACAGCAGATTTTAAttatacaacaaaaaaagcCCTGTGTGTTCatttactatataaaaaaattaagcataCGCGACAAAAGATCTGAAACTGAACTAAACCTGAAGTAGTTGTAGTAAGGTGAAGAGTAGTAGTAAGTGATATCCATTAGTACTTTTTAAGCAATGGTGCTTTGGCCCTTATCTGCATTAATGAAGCCCTACTTTTCACCATCAATACAGCAGAATGTTCCATATTTCAGAGCTTTGTAAAATGAGTTACGTTCCTATTGCATGGCTCTCTGATTCTAGACTGTCTAGAGCAAATTACTGTACAAATCTTCTATATATTGTTTGTTCAAGTGCACGATTGATCCTGTCTcactcttatttattatttatttaatttatcgATGAATTGCATCAAATCTTTTCTGTACAGCACTACAATGTTCACATTAGGCACTTGTATAGTAATCTTTGTGACGTCATCTTGTGCCCTGGACACTGGATATACTGTTTATCAGATTTACAAAGCATATATGAAATTGTCTAACAGCTGGTGTAATTTCTGCAGCACACAGGATTCTAAATAAATCCTCTCAAATCAGTTTATCTCAGTTTGTCAAAGATTTTCTGAAGTAATTTACCTTatgctttctttcatttttattaaattacttgtttttctgaaatgtCTACCACCAGTGTTTTGGAGTTTTGATGATGCTGGGGCAGCTGTAGACCTGTATCTGTCTTTACCATCAGAAAAAAGCTCTGATTCTGGTCTTTCTCCTGTTATCTCTAAATGAGTGTAGGAAGTGTTTAGTACAGTTGAGGATGTTCACTAATTGTTAATATCagtcacttgttttttttttttttttaaattagagttCACGTTGTGCATTTTCTGCTGCGGTACCACTTTCCAAAaggtcaaagttgaaccatGTTGAACTTTGACCACGATAAGCTTTAGCGCACATTAATCAAACAGCATGAATAAACTCTAATGGTATTTTATCGCAGCAAggtatgaaaacagactgttgactGGGTGTAAGATGGCAACAACAATAGCGACGCACCctgcacagggtgtacgatgGGGCCCAGAGACACAGAACGACACCttgagagtcttcagcacagtggtGATGTGGACAGTTGAAAGGAAAACAAATTTTGGA
>XM_015607948.2
aaaaaaaaaaatacgtatgttctattttatatatttaaaggaaATAACGGGGTTGTAATTATTGCATGTATTATAGCTAAATGAGCTTTTCCCCAGTGCAGCCTCTGTGCTGTTTATCTAAACTAGCTCTAGGCAGCAAATCAGTCTTTGATAAATCAAATTCAGTCAAATTATATTGAACTAATACCTTTATTACTTAACCCTCCTCAGAAAATTATTCTATTTTATCTTCATATCATCAACACTAAGGAAACATAAACCCAGTTCGAGAGCTCGGCTAAATGATGATGAGGCGCAGCTGGTGTGAGACGCCCCCGGCCATCACCCTGAGGATCAGACCCTCAGCAGCGCTCAACCTCAAGCTCCGGAGAGGCCTCCGCATGAAGAGGCCGAAGCTCCAGGAGGCCCGCGGTCCACCGGGCAAAATCCAACACCAGCACCCGCTTCAACACCAACACCAGCTTCAGCCCCAACACAGCCGAAAACGAGAAGAAATGCCCAGGCCTTGTGAACAACCCTGGGGCTCAACCCTGGTCATCCAGCGCCAAGAGATGGCTGCCTTCTTCAGACTGTTTGATGATGACCTAATACAAGACTTCCTGTGGATGGACTGCTGTTGCAAACTTACAGACAAGTATTTGCTTGCCATGGCCTTCGTCTACTTCAAAAGGGCCCGTTTCAGCATCAGTGAGCACAGCAGGATGAACTTCTTTATCGCTCTATATCTGGCAAACACCatggaggaggatgaggaagagcCGAAATACGAGATCTTTCCCTGGGCTTTAGGGAAGAGCTGGAGGAAGCTTTTCCCTTGCTTTCTGAAGCAGAGGGACAAGCTGTGGGCACGAATCGAGTACCGCGCTGCCGTCAGCCGGCGCTGCTGTGAGGAGGTGATGGCCATTGTTCCATCTCACTTCATCTGGCAGCGTGAGCGTGCTGAGCACCACAGTGGAGCGCAGAGGCAGTACCGGGACCGGGATGAGGTGCACATGCCCCGCGGCCCAGCCGCCTCACCTGAACCCTGTTCTCTCTGTGCCAAAACTGCCGCCATTTCCTCCTTCTCATCCTCCTCCCCTCTACCACTTGCACTGAATCTCAGTTTGGAGTCTACACCACCATCCAAGCACCAGGCTTCAGACCAGCCCAGCAAGAAGACTGCCTGCTACCACTGCATGGACAACCCAGCAGGTGGgCAGTGATGTGGACACTGAAGCTGGGCATGACTACTCCATGGACTGGATCAACGAGGAGTAGGTTCCCACTATACATTACCGTAACCAGTATTATCCGTTACCTGTACACATGACTGTCTTACTGACAGCAGATTTTAAttatacaacaaaaaaagcCCTGTGTGTTCatttactatataaaaaaattaagcataCGCGACAAAAGATCTGAAACTGAACTAAACCTGAAGTAGTTGTAGTAAGGTGAAGAGTAGTAGTAAGTGATATCCATTAGTACTTTTTAAGCAATGGTGCTTTGGCCCTTATCTGCATTAATGAAGCCCTACTTTTCACCATCAATACAGCAGAATGTTCCATATTTCAGAGCTTTGTAAAATGAGTTACGTTCCTATTGCATGGCTCTCTGATTCTAGACTGTCTAGAGCAAATTACTGTACAAATCTTCTATATATTGTTTGTTCAAGTGCACGATTGATCCTGTCTcactcttatttattatttatttaatttatcgATGAATTGCATCAAATCTTTTCTGTACAGCACTACAATGTTCACATTAGGCACTTGTATAGTAATCTTTGTGACGTCATCTTGTGCCCTGGACACTGGATATACTGTTTATCAGATTTACAAAGCATATATGAAATTGTCTAACAGCTGGTGTAATTTCTGCAGCACACAGGATTCTAAATAAATCCTCTCAAATCAGTTTATCTCAGTTTGTCAAAGATTTTCTGAAGTAATTTACCTTatgctttctttcatttttattaaattacttgtttttctgaaatgtCTACCACCAGTGTTTTGGAGTTTTGATGATGCTGGGGCAGCTGTAGACCTGTATCTGTCTTTACCATCAGAAAAAAGCTCTGATTCTGGTCTTTCTCCTGTTATCTCTAAATGAGTGTAGGAAGTGTTTAGTACAGTTGAGGATGTTCACTAATTGTTAATATCagtcacttgttttttttttttttttaaattagagttCACGTTGTGCATTTTCTGCTGCGGTACCACTTTCCAAAaggtcaaagttgaaccatGTTGAACTTTGACCACGATAAGCTTTAGCGCACATTAATCAAACAGCATGAATAAACTCTAATGGTATTTTATCGCAGCAAggtatgaaaacagactgttgactGGGTGTAAGATGGCAACAACAATAGCGACGCACCctgcacagggtgtacgatgGGGCCCAGAGACACAGAACGACACCttgagagtcttcagcacagtggtGATGTGGACAGTTGAAAGGAAAACAAATTTTGGA
>XM_022672672.1
TCCTGCTAAACTGaaataattaatgatttttagcTGGAAAACTTAACATAATCATACATTGATGAGCTTTTATATTCCTAtacttggcaaaaaaaaaaatacgtatgttctattttatatatttaaaggaaATAACGGGGTTGTAATTATTGCATGTATTATAGCTAAATGAGCTTTTCCCCAGTGCAGCCTCTGTGCTGTTTATCTAAACTAGCTCTAGGCAGCAAATCAGTCTTTGATAAATCAAATTCAGTCAAATTATATTGAACTAATACCTTTATTACTTAACCCTCCTCAGAAAATTATTCTATTTTATCTTCATATCATCAACACTAAGGAAACATAAACCCAGTTCGAGAGCTCGGCTAAATGATGATGAGGCGCAGCTGGTGTGAGACGCCCCCGGCCATCACCCTGAGGATCAGACCCTCAGCAGCGCTCAACCTCAAGCTCCGGAGAGGCCTCCGCATGAAGAGGCCGAAGCTCCAGGAGGCCCGCGGTCCACCGGGCAAAATCCAACACCAGCACCCGCTTCAACACCAACACCAGCTTCAGCCCCAACACAGCCGAAAACGAGAAGAAATGCCCAGGCCTTGTGAACAACCCTGGGGCTCAACCCTGGTCATCCAGCGCCAAGAGATGGCTGCCTTCTTCAGACTGTTTGATGATGACCTAATACAAGACTTCCTGTGGATGGACTGCTGTTGCAAACTTACAGACAAGTATTTGCTTGCCATGGCCTTCGTCTACTTCAAAAGGGCCCGTTTCAGCATCAGTGAGCACAGCAGGATGAACTTCTTTATCGCTCTATATCTGGCAAACACCatggaggaggatgaggaagagcCGAAATACGAGATCTTTCCCTGGGCTTTAGGGAAGAGCTGGAGGAAGCTTTTCCCTTGCTTTCTGAAGCAGAGGGACAAGCTGTGGGCACGAATCGAGTACCGCGCTGCCGTCAGCCGGCGCTGCTGTGAGGAGGTGATGGCCATTGTTCCATCTCACTTCATCTGGCAGCGTGAGCGTGCTGAGCACCACAGTGGAGCGCAGAGGCAGTACCGGGACCGGGATGAGGTGCACATGCCCCGCGGCCCAGCCGCCTCACCTGAACCCTGTTCTCTCTGTGCCAAAACTGCCGCCATTTCCTCCTTCTCATCCTCCTCCCCTCTACCACTTGCACTGAATCTCAGTTTGGAGTCTACACCACCATCCAAGCACCAGGCTTCAGACCAGCCCAGCAAGAAGACTGCCTGCTACCACTGCATGGACAACCCAGCAGgCAGTGATGTGGACACTGAAGCTGGGCATGACTACTCCATGGACTGGATCAACGAGGAGTTTACGCTGGTTGAAGGTGCCATCTTTTTTGAGTGACGGACCCAGCAGCCAATCTCTGTACTGAACCTCCATGATGCGTTCACACACCAGAGGAAGAGTGGAACATCGCAGCCCCTCCATTAAATCAATAATCTGTGTAATGCTGCCACATACAGGACAGAGTAACCCATTAGAAATGAACATTAAAATGACAACTTGTATTTTAAGAAACTGATCACTGTGAATTGGCATCAAAAATAAAAccgaaacaccagcagca
>XR_002650309.1
caaaaaaaaaaatacgtatgttctattttatatatttaaaggaaATAACGGGGTTGTAATTATTGCATGTATTATAGCTAAATGAGCTTTTCCCCAGTGCAGCCTCTGTGCTGTTTATCTAAACTAGCTCTAGGCAGCAAATCAGTCTTTGATAAATCAAATTCAGTCAAATTATATTGAACTAATACCTTTATTACTTAACCCTCCTCAGAAAATTATTCTATTTTATCTTCATATCATCAACACTAAGGAAACATAAACCCAGTTCGAGAGCTCGGCTAAATGATGATGAGGCGCAGCTGGTGTGAGACGCCCCCGGCCATCACCCTGAGGATCAGACCCTCAGCAGCGCTCAACCTCAAGCTCCGGAGAGGCCTCCGCATGAAGAGGCCGAAGCTCCAGGAGGCCCGCGGTCCACCGGGCAAAATCCAACACCAGCACCCGCTTCAACACCAACACCAGCTTCAGCCCCAACACAGCCGAAAACGAGAAGAAATGCCCAGGCCTTGTGAACAACCCTGGGGCTCAACCCTGGTCATCCAGCGCCAAGAGATGGCTGCCTTCTTCAGACTGTTTGATGATGACCTAATACAAGACTTCCTGTGGATGGACTGCTGTTGCAAACTTACAGACAAGTATTTGCTTGCCATGGCCTTCGTCTACTTCAAAAGGGCCCGTTTCAGCATCAGTGAGCACAGCAGGATGAACTTCTTTATCGCTCTATATCTGGCAAACACCatggaggaggatgaggaagagcCGAAATACGAGATCTTTCCCTGGGCTTTAGGGAAGAGCTGGAGGAAGCTTTTCCCTTGCTTTCTGAAGCAGAGGGACAAGCTGTGGGCACGAATCGAGTACCGCGCTGCCGTCAGCCGGCGCTGCTGTGAGGAGGTGATGGCCATTGTTCCATCTCACTTCATCTGGCAGCGTGAGCGTGCTGAGCACCACAGTGGAGCGCAGAGGCAGTACCGGGACCGGGATGAGGTGCACATGCCCCGCGGCCCAGCCGCCTCACCTGAACCCTGTTCTCTCTGTGCCAAAACTGCCGCCATTTCCTCCTTCTCATCCTCCTCCCCTCTACCACTTGCACTGAATCTCAGTTTGGAGTCTACACCACCATCCAAGCACCAGGCTTCAGACCAGCCCAGCAAGAAGACTGCCTGCTACCACTGCATGGACAACCCAGCAGGTGGgCAGTGATGTGGACACTGAAGCTGGGCATGACTACTCCATGGACTGGATCAACGAGGAGTTTACGCTGGTTGAAGGTGCCATCTTTTTT

Function

symbol description
spdya Predicted to enable protein kinase binding activity. Orthologous to human SPDYA (speedy/RINGO cell cycle regulator family member A).

NR:

description
speedy protein A

GO: NA

KEGG:

id description
K08694 SPDY, RINGO; speedy

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015607947.2 False 2487 mRNA 0.44 7 8634603 8641745
XM_015607948.2 True 2490 mRNA 0.44 7 8634603 8641744
XM_022672672.1 False 1597 mRNA 0.48 8 8632646 8641832
XR_002650309.1 False 1285 misc_RNA 0.51 8 8632875 8641745

Neighbor

gene id symbol gene type direction distance location
wdr43 wdr43 coding downstream 10063 8607944 ~ 8622583 (-)
LOC103047224 LOC103047224,LOC108433332,LOC107583588 coding downstream 28130 8601082 ~ 8604516 (-)
LOC103047525 LOC108433331 coding downstream 52585 8575266 ~ 8580061 (-)
gale gale,LOC107721820,LOC107583591 coding downstream 82679 8529837 ~ 8549967 (-)
zbtb8a zbtb8a coding downstream 104710 8520075 ~ 8527936 (-)
ush2a ush2a,LOC108444108,LOC108414482 coding upstream 126830 8768662 ~ 9026556 (-)
LOC103043477 esrrg,LOC107582200,LOC107733169 coding upstream 414236 9056068 ~ 9177695 (-)
LOC111193187 NA coding upstream 1196146 9837978 ~ 9838726 (-)
LOC103045212 LOC108441044,LOC108269989,LOC107594821,LOC107719497,LOC107590922,LOC107733139 coding upstream 1305680 9947512 ~ 10023607 (-)
LOC111193127 NA coding upstream 1398509 10040341 ~ 10041065 (-)
G78986 NA non-coding downstream 51820 8580583 ~ 8580826 (-)
G78983 NA non-coding downstream 69119 8562098 ~ 8563527 (-)
G78978 NA non-coding downstream 95022 8535936 ~ 8537624 (-)
G78890 NA non-coding downstream 200362 8428518 ~ 8432284 (-)
LOC111193182 NA non-coding downstream 217536 8379489 ~ 8415110 (-)
G79039 NA non-coding upstream 717746 9359578 ~ 9359810 (-)
G79064 NA non-coding upstream 954180 9596012 ~ 9596425 (-)
G79067 NA non-coding upstream 971891 9613723 ~ 9613985 (-)
G79080 NA non-coding upstream 1004851 9646683 ~ 9647063 (-)
LOC111193186 ttc27,LOC107689788,LOC107670805 non-coding upstream 1071208 9713040 ~ 9716352 (-)
LOC111193183 NA other downstream 114998 8476397 ~ 8517648 (-)
LOC111193177 kcnh1,LOC108433307,LOC106904951,LOC103476431,LOC102309410,LOC103370850,LOC103137420,LOC101155792 other downstream 1411792 7198909 ~ 7220854 (-)
G78297 kdm1a other downstream 3446288 5184792 ~ 5186358 (-)
G78083 NA other downstream 4426262 4045434 ~ 4206384 (-)
G78023 scfd1 other downstream 4792076 3834562 ~ 3840570 (-)
LOC111193185 stac,LOC107715935,LOC107670884 other upstream 8796 8650628 ~ 8655017 (-)
LOC103027354 LOC103027354,LOC108438753 other upstream 1392854 10034686 ~ 10071884 (-)
LOC103027264 NA other upstream 1652656 10294488 ~ 10336716 (-)
G79582 NA other upstream 2286808 10928640 ~ 10929596 (-)
ltbp1 ltbp1 other upstream 2299855 10941687 ~ 11183941 (-)

Expression


Co-expression Network