LOC111193126


Basic Information

Item Value
gene id LOC111193126
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 7931051 ~ 7967678 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022672469.1
GGGAGCAGCCAGTCGGCTGAGGCTGCAGCGCTGGGAGTAATGGAGAGACTGCAGCTTTAACACAGTATTAAACTAAACCAGAGGAGAGGAGCTCCAGCTACTGCCGCATTCGGACCAGGAGAGACCCGGGACATGgtgtgtatgtgtctgtaaaGAAGCTTTCATCTGAAGACCTCAGAAGATCCTAAGCTCAGACTGAGAGTAAAACCTCCAGCATGGAACAGGAGGACttccctccccctcctcctgaCTtGCTAGATGACGAAGAGGAGGGTGAGCAGTTTGAGTTTGATGACAGCTGTGATGAAGCTCCTGAAGCTGACCGCCTCCCCCCGGCTCCTCCTGCACAGGACTACGGTGCTCCAGACCACACTGGGGCAGCAGGAGCTTCTGTGCCCGTTTCTCTACCCTGCTTAGAAAATGATCCTGCTCACCTAGACTCTCTGAACAAAGCAGAGGCTGATCTTCCCCCACCCCCTGCAAACTGTCTTGCACCTAACGCCACAGTGTCCTGTACTTCTGACCTGCAGAGTGACCTGCCAGCACCTCCTGACTGTCTGGACGGTTCAGTCGCTGATGCAGGACTGAACAGTGACCTGCCTCCACCTCTAGAGTTCCCCACAGAGCCTGCTACTCGAGAAGaGAACAAGACCAAGGTTAACCCGTACTCAGTGATTGACATCACCCCCATCCAGCAGCAGATCTCCTCCCAGCTCTCTTCATCTCCATCCAAAGACAATGAAGGGAATTCCCAGGAATCGCCCAGCAGCCCTAATGTGCCCTCTGGCTATTCTGTGCCTGTACCCTGCGGCTACGCCACCCCCTCCAACGTGCCCATAATCACGCCCGCCTACACCACGCCCGTCATCATCAGGCACTTCTCTGTGGACGAGGACGTGACTGTGGTGGGAGCAGGGAACGTTTTAACAGACAGGTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022672469.1 True 938 mRNA 0.55 5 7931051 7967678

Neighbor

gene id symbol gene type direction distance location
arhgef10 arhgef10,LOC107721185,LOC107716000 coding downstream 5092 7825663 ~ 7925959 (-)
kbtbd11 kbtbd11,LOC102794541 coding downstream 110849 7811870 ~ 7820202 (-)
LOC111193181 NA coding downstream 172848 7747106 ~ 7758203 (-)
LOC103025534 LOC108433315 coding downstream 281176 7629780 ~ 7649875 (-)
LOC103026256 tdh2,LOC108433314,LOC107582959,LOC107583601,LOC105896089,LOC107721289,LOC107659247,LOC108269662 coding downstream 306591 7609633 ~ 7624460 (-)
cln8 cln8 coding upstream 18483 7986161 ~ 7996819 (-)
dlgap2 dlgap2,LOC107583594,LOC107654879,LOC107715999,LOC107721130,LOC107583025 coding upstream 40869 8008547 ~ 8222318 (-)
zbtb8a zbtb8a coding upstream 552397 8520075 ~ 8527936 (-)
gale gale,LOC107721820,LOC107583591 coding upstream 562159 8529837 ~ 8549967 (-)
LOC103047525 LOC108433331 coding upstream 607588 8575266 ~ 8580061 (-)
G78885 NA non-coding downstream 15839 7849753 ~ 7915212 (-)
G78859 NA non-coding downstream 163724 7745303 ~ 7767327 (-)
G78871 NA non-coding downstream 165555 7762967 ~ 7765496 (-)
G78861 NA non-coding downstream 190458 7740016 ~ 7740593 (-)
G78643 NA non-coding downstream 568615 7362219 ~ 7362436 (-)
G78889 NA non-coding upstream 10122 7977800 ~ 7981423 (-)
G78891 NA non-coding upstream 14292 7981970 ~ 8040192 (-)
G78911 NA non-coding upstream 182777 8150455 ~ 8151276 (-)
G78940 NA non-coding upstream 324584 8292262 ~ 8294085 (-)
LOC111193182 NA non-coding upstream 411811 8379489 ~ 8415110 (-)
LOC111193177 kcnh1,LOC108433307,LOC106904951,LOC103476431,LOC102309410,LOC103370850,LOC103137420,LOC101155792 other downstream 710197 7198909 ~ 7220854 (-)
G78297 kdm1a other downstream 2744693 5184792 ~ 5186358 (-)
G78083 NA other downstream 3724667 4045434 ~ 4206384 (-)
G78023 scfd1 other downstream 4090481 3834562 ~ 3840570 (-)
prkd1 prkd1,LOC107590910,LOC107719483,LOC107733145 other downstream 4216694 3645097 ~ 3714357 (-)
LOC111193183 NA other upstream 508719 8476397 ~ 8517648 (-)
spdya spdya other upstream 664968 8632646 ~ 8641832 (-)
LOC111193185 stac,LOC107715935,LOC107670884 other upstream 682950 8650628 ~ 8655017 (-)
LOC103027354 LOC103027354,LOC108438753 other upstream 2067008 10034686 ~ 10071884 (-)
LOC103027264 NA other upstream 2326810 10294488 ~ 10336716 (-)

Expression


Co-expression Network