LOC111193129


Basic Information

Item Value
gene id LOC111193129
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 11205127 ~ 11208684 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022672474.1
ATGCCATTCCCCACACACCGCCAGAGGACGGCGGTACACGAGCACCGGGACACCGGGGATAGAGAGCAAGGGCTTGGACCACAGAGAGCCCCCTTGGATGTCCCGGCCCCAATAATAGAGTTTAACACTTCAGAACCCACTTGGAAGGAGGTACAGGAGGTGACAAGAGCAGCCAGATCCAGCTCTGCTCCAGGACCCAGTCGAGTACCCTACAAGGTGTACAAACGCTGCCCAAACCTCCTCAGAAATCTCTGGAAGTTGCTGCGAGTGATTTGGAGGAGGGGGACCATCTCAGATCAGTGGAGGCAGGCGGAAGGCGTCTGGATACCCAAGGAGGAGAACTCAACTAGGCTGGAGCAGTTCCGATCCATCTCACTTCTCAGCGTGGAGGGAAAGATCTTCTTCAGTGTTCTTGCCAGAAGGACGACAGACTTCCTCCTGAAGAACAAATACATTGACACTTCAGTACAGAAGGGTGGCATTCCTGGAGTCCCTGGCTGCCTGGAGCACACTGGAGTGGTCACCCAGCTAATCAGAGAGGCTCGTGAAGGGAATGGAGACCTGTCAGTGCTTTGGCTGGACCTAGCTAATGCATATGGGTCAGTCCCCCACAAGCTAGTAGAAATCACTCTGAACCACTACCACATACCCCATAAGATCAAGGACCTCATCCTGAACTACTATGGGAACTTCAGGCTGAGAGTGACTTCAGGTAGCACAACATCCAACTGGCATAGGCTAGAGAAAGGGATTATTACAGGCTGTACAATCTCAGTCATCCTGTTCGCCCTTGCCATGAGTATGTTGGTGAAGGCAGCTGAGACAGAGTGCAGAGGCCCCCTGTCCAAGTCTGGAGTTCGACAGCCCCCCATCCGAGCCTTTATGGATGACCTGACGGTCACCACTACATCTGTGCCTGGATGCCGGTGGATCCTTCAGGGCCTGGAAAAGCTCATCAGTTGGGCAAGGATGAGTTTTAAACCATCAAAGTCCAGGTCCATGGTCCTGAAGAGGGGGAAAGTGGTGGACAAGTTCCGCTTCTCTGTGAATGGTGTGGTAATACCATCCATCACTGAAAAACCAGTCACAAGCCTGGGCAAGGTTTTTAACTGTAGCCTCAGAGACACAGCATCAGTCCAATCCACCATCAAGAAGCTCGAAGCCTGGTTGTCCACCGTGGACAAGTCCGGCCTTCCCGGAAAGTTCAAGGCATGGCTATACCAACATGGCATTTTGCCCCGTATCCTCTGGCCTTTGCTGGTGTACGAGGTGACCATGTCAACTGTGGAGACCATGGAAAGAAAGATCAGCTCCTATCTCCGAAGATGGCTGGGCCTACCACGAAGTCTTACAAGTGCAGCGCTGTATGGAAAAAGCAACAAACTACAGCTTCCTTTCAGCAGCCTGGAGGAGGAATTCAGAGTCTCTCGCACGAGAGAGGCACTAGTCTATCAAGATTCCAGTGATACCAGAGTTGCAGCAGCAGGCATAGTGGTAAAGACAGGCAGGAAGTTCAAGGTTCAAGAGGAGCTGGAGCTGGCAGAGTCCCGGCTAAGACACAGGGCTCTGTTGGGCACGGTGGCCATTGGACGAACAGGACTGGGGTTTATTCCTCAGCCACGCTGCGACCTGGCCCACGGAAAGGACAGACGCCATCTTGTCCTGGAGGAGGTGCGGGCAGGGGTTGAAGATAAGAGGACCAGCAGGATGGTGAGCATGCAGCAGCAGGGAGCATCGACAAGGTGGGAAGGAGCGCTGGAAAGGAAGCTGACCTGGAATGAAATCTGGAAGGCAGAACCACAGCGCATCAAGTTCATGGTCCAAGCTGTGTATGACGTGCTACCCAGTCCAGCCAACCTGCACACCTGGGGAAAAAGTGTCCTACCCACATGTCCTCTCTGCCCAGGAAGGGGCACACTGGAACATATCCTTAGCAGCTGCCCAGCAGCCCTCAGCGGAGGCCGCTATCGCTGGAAAGCCCACTGTGTGCCAATAGAGGTGGGATGTCGAGGCTTCGCAGCCCGCTCCCTATGCAAGACCTATACCCTCCTTGGCGTCACAGGAGCTGCAAAAAGGAGAGCTATCAAGTCCACTACAGAGGCTGCAGAGAGAGCCTCAAGGTGGATTTGGATCAAAAGGTCCGAAACGTGGGCCAAAGCTGCTGGGACACAAGTCGGGGTCTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022672474.1 True 2184 mRNA 0.54 2 11205127 11208684

Neighbor

gene id symbol gene type direction distance location
rasgrp3 rasgrp3,LOC107744459,LOC107670874,LOC107689794,LOC106576952 coding downstream 268864 10822882 ~ 10936263 (-)
LOC103040295 LOC108430229 coding downstream 406325 10790644 ~ 10798802 (-)
LOC103026670 LOC103026670,LOC108430189 coding downstream 487287 10715367 ~ 10717840 (-)
fgfbp3 NA coding downstream 520192 10681156 ~ 10684935 (-)
LOC103025430 NA coding downstream 564887 10637848 ~ 10640240 (-)
ttc27 ttc27,LOC107689788 coding upstream 11679 11220363 ~ 11363208 (-)
birc6 NA coding upstream 185077 11393761 ~ 12501284 (-)
pdzd8 pdzd8 coding upstream 433906 11642590 ~ 11808582 (-)
rlf NA coding upstream 917143 12125827 ~ 12150716 (-)
yipf4 yipf4,LOC107744423,LOC107670878,LOC106576945 coding upstream 1310779 12519463 ~ 12524837 (-)
G79533 NA non-coding downstream 570034 10634500 ~ 10635093 (-)
G79515 NA non-coding downstream 647669 10506347 ~ 10557458 (-)
G79514 NA non-coding downstream 648259 10516926 ~ 10556868 (-)
G79357 NA non-coding downstream 903834 10301069 ~ 10301293 (-)
G79347 NA non-coding downstream 945245 10259602 ~ 10259882 (-)
G79602 NA non-coding upstream 2367 11211051 ~ 11217908 (-)
LOC111193138 NA non-coding upstream 163395 11372079 ~ 11375380 (-)
G79633 NA non-coding upstream 306405 11515089 ~ 11515665 (-)
G79642 NA non-coding upstream 324894 11533578 ~ 11535398 (-)
G79644 NA non-coding upstream 327109 11535793 ~ 11536344 (-)
ltbp1 ltbp1 other downstream 21186 10941687 ~ 11183941 (-)
G79582 NA other downstream 275531 10928640 ~ 10929596 (-)
LOC103027264 NA other downstream 868411 10294488 ~ 10336716 (-)
LOC103027354 LOC103027354,LOC108438753 other downstream 1133243 10034686 ~ 10071884 (-)
LOC111193185 stac,LOC107715935,LOC107670884 other downstream 2550110 8650628 ~ 8655017 (-)
G79865 NA other upstream 760757 11969441 ~ 11971939 (-)
G79945 NA other upstream 948902 12157586 ~ 12192028 (-)
ncmap NA other upstream 1125715 12334399 ~ 12372804 (-)
edaradd edaradd other upstream 1376478 12585162 ~ 12613731 (-)
LOC103046962 ptena,LOC108411875,LOC107670848,LOC101171856,LOC105900832,LOC105940225,LOC104929647,LOC103387686 other upstream 1663305 12871989 ~ 12912395 (-)

Expression


Co-expression Network