strn3 (strn3,LOC106611207,LOC107590905)


Basic Information

Item Value
gene id strn3
gene name strn3,LOC106611207,LOC107590905
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 3881319 ~ 3909337 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022672612.1
TCCCGTCATGCAGCGCGAGCTGAATCCCCCTGTCGCCCGCAGTGAGGAGACTCTCATCCAGGGAGCGGACTAATGGCGGCCGGCGGAGCCGTGCGCTCACTCTGAGCCCGGAGCACACACCGCGTTCAGCGCCGCGGGCGAACCCGCAGCAGCCTGTAGCGGGGCGAGCGCTGCTTACCGAGGGCGAAGGGGGCGGGGGATcggcgagagagagggagcgagcgCGACTGTGGTCGTGCGGCGACTTGGAGCGGGacattgctatttttaaagaaaatggatGAACACCccggcggaggaggaggagcagcagcagggggAGGAATGGCCACCGCCAGACAGCAGCAAGCGCCGCAGCAGGGAAACCATAACGCCGTTAATCCCCAGATCGGACCCGGGGGGACGGCGTCAGCGGTCCAGCAGCAAGACGAGATGCCGCGGCCGCAGCAGTACACGATCCCGGGGATTCTGCACTACATCCAGCACGAGTGGGCCCGGTTCGAGATGGAGCGGGCGCACTGGGAAGTGGAGCGGGCCGAGCTGCAGGCTCGGATAGCATTCCTCcaaggagagagaaagggtcaagaaaatttaaaaaacgacCTCGTTAGAAGAATAAAAATGTTAgaatatgcattaaaacaagaaagAGCAAAAtaccataaattaaaatatggcACAGAACTAAATCAAGGTGAAGTGAAAATGCCCAGCTTTGAATCAGAAGATACCAAAGAAACAGAGGTGCCCGCTGTACCACAGAACAGTCAACTAACCTGGAAACAAGGACGGCAACTCCTAAGACAATATCTTCAAGAGGTAGGTTACACAGACACAATATTGGACGTTCGGTCGCAACGAGTGCGATCCTTACTAGGGCTGTCTGGCTCAGAGCAGAACGGCTCAGTGGAAACCAAGAACCTGGAGCAGATCCTTAATGGAGGAGAGTCTCCTGCCAAAAGGAAGGGACAAGATATGAAAAGGAATCCAGGAGACGTCCTGGAGACATTTAATTTCTTAGAAAATGCTGATGATagtgatgaagaggaggaggatgaagagggGGACTTGATGGAAGACCTTTCAAACAGGACTGataaacaaagaataaagaaacataaaattaaGGTGGGAAATGAAGGTTTGGCATCAGATCTCCCAGATGATCCAGACACAGAAGAAGTGCTGAAGGAGTTTGATTTCCTGGTGAATGCAGAAGACGGTGAGGGTGCAGGAGAGGCTCGGAGTTCAGGAGACGGCACAGAGTGGGCTGAGCCACTGCCATTTCCATCCGGAGGGGGAAAGTCCTTTATCATGGGCTCGGATGATGTGCTGGACAGTGTGCTGGGCCTGGGAGACCTCGCTGACCTGACTGTGTCAAACGATGAGGCTGATTACAGCTACGATCTGCCGGCCAATAAGGACGCGTTCAGGAAGACATGGAATGCGAAGTATACCCTGCGCAGCCACTTTGATGGAGTGCGTGCCTTGGCCTTCCATCCTGTAGAGCCAGTGCTGGTCACGGTCTCGGAGGACCACACCCTGAAGTTGTGGAACCTGCAGAAGACAGTTCCTGCCAAAAAAAGTGCCTCATTTGATGTGGAGCCCATCTACACTTTCAGAGCACACGTtgGGCCCGTGCTTTCACTGGCTGTCACTGCAAGTGGAGAGCAGTGTTTTAGCGGCGGCATTGACTCAACAATACAGTGGTGGAACATCCCCAGCTCTAATGTAGACCCTTATGACACTTACGATCCCAGTGTTTTGGCTGGCTCGTTACTGGGGCACACTGATGCAGTTTGGGGACTGGCCTACAGTGGAATCAAAAACCGACTGTTGTCCTGCTCTGCTGATGGAACGGTCAAGTTGTGGGACCCTCAGGAGAAAATGCCCTGCCTGTGCACATTTAATTCTGAGAGAGAACATGGTATTCCCACAGCAGTAGATTTTAATGGTTGTGATCCAGCGTACATGGTGGCCTCTTTCAACACAGGGTCTGCCGTGATCTACGATCTGGAGACCTCTCAATCTGTAGTGGAGTTCTCGGCACAGAAAGACAGCAGTCTTCCAGCTGGGAATCACATTAATAAAGTAGTTAGTCATCCAAccctgccggtcacaatcacaGCTCATGAGGACAGACACATCAAATTCTTTGACAATAAATCAGGTAAAGTTATCCATGCAATGGTAGCTCATTTGGATGCTGTTACCAGTCTGGCGGTGGATCCCAATGGCATCTACCTGATGTCAGGAAGTCACGATTGTTCCATTCGGCTGTGGAATCTGGACAGTAAGACGTGCGTACAGGAAGTCACGGCTCACAGAAAGAAGTCGGATGAGTCCATATATGACGTTGCCTTCCACCCGTCTAAGGCGTACATAGGGAGCGCCGGGGCGGACGCCCTGGCCAAAGTGTTTGTATAGAACTCCCCTCCTCGTCAACGCTGGAGAGAACTCGCCCTCACAAtcagacagtaagagagagatgcGACTGGTTCACTGCCTTGTCTAACAAGAGTAGCATTTCTTACACTACATTGACGCGGCCTCCGCCAGCCCCCTCGTCACCGAACGCACACGAGGCCGCCCCAGGTGCCAAGCGCTAGAGTGCTAGACTGGCAAAGCGACGCCCGAGTGGAGTGCCCGCTTAGTTTTAATCCTCTCTTTTTCatccaaacttaaaaaaaaaaaaaaaaaacggaacaaaaatgtttaactgtactttactgtaagTCAGAGCTGGAGTTACACTAGTGTTTGTCTTCTTTTGAATGGGTTTGAAATACGAGCTGATGGCGTGTGATAAGGTTCTGCAGGTGTGTTAAACCACAGAGTGGTTATAACATGCTTGTGAACACCCCACCGGCGACCACGACAGGTGGACGAGCTGCACCAGAGGAGGAACCTATAACCCCCTGCACGGCACAGAGCCACGAGCTGACTTTGGTCTCACAAGTTGCCCTCTTTGACGTTAATGTAGCgttatttaaaaaggaaaaacagacttaaaaaaaaaaaaaacagttcagttcAATCAACTTCATACCTTAGCATTAGATTCTTGgcattttgtgtaaaaaaaaaaacaaacaaaaaaaaacaaagtatagTTTTTATAATCCTTTTTATATAAATCGAGACTGTTGTAACAGCGCTgaagtcatttttaaatatataaaaaaggaaaaaagggagTGTGAAGATCAAGCCCTCCACATGGATCGACTCATCACCTGCCCGACTCATCACAGCTGACTCGCTGCATCACTGGAAGCCCTGGATGAGCTCCGCCCTTAGGAATGCTACTGTCTGACGTCGCTGTAACGTTGTTTTATCGCATCATACTAAACGATAGTAGAAGCACAGTCTGTTTGGCCTTGAGAGCTCTTTATAGGTTATCAACGAATAAACTGCAGCATCCTATCACTATGTGATGTTTCTGTACATCTTACTGTAACTGAGTTTATTTATCACAGGTTAGGCAACTGAACACTATTGGCTTATTTATTTCACTGTTTCGGGTTAGTCTTAGCCTCTCGTGTGAAACGTGCACCCCAAGGATTATCGTAAGATTGTGCTCGTAAGTGAACGGAACAGCGGTTTAAAACTTGCACaaacagaaatgttttaaaagtttttcttttaaaagatcTACTCTCATCCCAGCCTGAAACTGAGGTTAAAATTTACCAAAAGTTTTGGCAGAATAGTGCTTTGAgaagcaccccccccccccacccaaccCCTTTCCTTTATTCCATTTTTATAAGTTAAGGGATCTCTGGATGTGGATAGATAGTTTGATGAATCACAGAATCAATCTGAGAAGATTCTGTCCCCACATTATCCTGTAAAACCATTTTATTTTCAAGCGTACAATTTATGGTGTAACTAAAGACCTTTTGTTTGTGTAATGCATGATTAATACATCAAAGTATTTTTTCTAGTCTTcccataaaaggaaaaaaaaaaaaccttctgatCAGTTTGGAATTTTGATGagttttgtaagttttttttttttttttttttttttttttgatttacAAACTATGGATttgcagattaaaaaaaaattgtaccaCATAGCAAAGTACAACTGTTGAAAagtaatgtatataaaatgtctataataaatattaaatggtGTACCTGTATATGCAA
>XM_022672614.1
GGTCCCGTCATGCAGCGCGAGCTGAATCCCCCTGTCGCCCGCAGTGAGGAGACTCTCATCCAGGGAGCGGACTAATGGCGGCCGGCGGAGCCGTGCGCTCACTCTGAGCCCGGAGCACACACCGCGTTCAGCGCCGCGGGCGAACCCGCAGCAGCCTGTAGCGGGGCGAGCGCTGCTTACCGAGGGCGAAGGGGGCGGGGGATcggcgagagagagggagcgagcgCGACTGTGGTCGTGCGGCGACTTGGAGCGGGacattgctatttttaaagaaaatggatGAACACCccggcggaggaggaggagcagcagcagggggAGGAATGGCCACCGCCAGACAGCAGCAAGCGCCGCAGCAGGGAAACCATAACGCCGTTAATCCCCAGATCGGACCCGGGGGGACGGCGTCAGCGGTCCAGCAGCAAGACGAGATGCCGCGGCCGCAGCAGTACACGATCCCGGGGATTCTGCACTACATCCAGCACGAGTGGGCCCGGTTCGAGATGGAGCGGGCGCACTGGGAAGTGGAGCGGGCCGAGCTGCAGGCTCGGATAGCATTCCTCcaaggagagagaaagggtcaagaaaatttaaaaaacgacCTCGTTAGAAGAATAAAAATGTTAgaatatgcattaaaacaagaaagAGCAAAAtaccataaattaaaatatggcACAGAACTAAATCAAGGTGAAGTGAAAATGCCCAGCTTTGAATCAGATACCAAAGAAACAGAGGTGCCCGCTGTACCACAGAACAGTCAACTAACCTGGAAACAAGGACGGCAACTCCTAAGACAATATCTTCAAGAGGTAGGTTACACAGACACAATATTGGACGTTCGGTCGCAACGAGTGCGATCCTTACTAGGGCTGTCTGGCTCAGAGCAGAACGGCTCAGTGGAAACCAAGAACCTGGAGCAGATCCTTAATGGAGGAGAGTCTCCTGCCAAAAGGAAGGGACAAGATATGAAAAGGAATCCAGGAGACGTCCTGGAGACATTTAATTTCTTAGAAAATGCTGATGATagtgatgaagaggaggaggatgaagagggGGACTTGATGGAAGACCTTTCAAACAGGACTGataaacaaagaataaagaaacataaaattaaGGTGGGAAATGAAGGTTTGGCATCAGATCTCCCAGATGATCCAGACACAGAAGAAGTGCTGAAGGAGTTTGATTTCCTGGTGAATGCAGAAGACGGTGAGGGTGCAGGAGAGGCTCGGAGTTCAGGAGACGGCACAGAGTGGGCTGAGCCACTGCCATTTCCATCCGGAGGGGGAAAGTCCTTTATCATGGGCTCGGATGATGTGCTGGACAGTGTGCTGGGCCTGGGAGACCTCGCTGACCTGACTGTGTCAAACGATGAGGCTGATTACAGCTACGATCTGCCGGCCAATAAGGACGCGTTCAGGAAGACATGGAATGCGAAGTATACCCTGCGCAGCCACTTTGATGGAGTGCGTGCCTTGGCCTTCCATCCTGTAGAGCCAGTGCTGGTCACGGTCTCGGAGGACCACACCCTGAAGTTGTGGAACCTGCAGAAGACAGTTCCTGCCAAAAAAAGTGCCTCATTTGATGTGGAGCCCATCTACACTTTCAGAGCACACGTtgGGCCCGTGCTTTCACTGGCTGTCACTGCAAGTGGAGAGCAGTGTTTTAGCGGCGGCATTGACTCAACAATACAGTGGTGGAACATCCCCAGCTCTAATGTAGACCCTTATGACACTTACGATCCCAGTGTTTTGGCTGGCTCGTTACTGGGGCACACTGATGCAGTTTGGGGACTGGCCTACAGTGGAATCAAAAACCGACTGTTGTCCTGCTCTGCTGATGGAACGGTCAAGTTGTGGGACCCTCAGGAGAAAATGCCCTGCCTGTGCACATTTAATTCTGAGAGAGAACATGGTATTCCCACAGCAGTAGATTTTAATGGTTGTGATCCAGCGTACATGGTGGCCTCTTTCAACACAGGGTCTGCCGTGATCTACGATCTGGAGACCTCTCAATCTGTAGTGGAGTTCTCGGCACAGAAAGACAGCAGTCTTCCAGCTGGGAATCACATTAATAAAGTAGTTAGTCATCCAAccctgccggtcacaatcacaGCTCATGAGGACAGACACATCAAATTCTTTGACAATAAATCAGGTAAAGTTATCCATGCAATGGTAGCTCATTTGGATGCTGTTACCAGTCTGGCGGTGGATCCCAATGGCATCTACCTGATGTCAGGAAGTCACGATTGTTCCATTCGGCTGTGGAATCTGGACAGTAAGACGTGCGTACAGGAAGTCACGGCTCACAGAAAGAAGTCGGATGAGTCCATATATGACGTTGCCTTCCACCCGTCTAAGGCGTACATAGGGAGCGCCGGGGCGGACGCCCTGGCCAAAGTGTTTGTATAGAACTCCCCTCCTCGTCAACGCTGGAGAGAACTCGCCCTCACAAtcagacagtaagagagagatgcGACTGGTTCACTGCCTTGTCTAACAAGAGTAGCATTTCTTACACTACATTGACGCGGCCTCCGCCAGCCCCCTCGTCACCGAACGCACACGAGGCCGCCCCAGGTGCCAAGCGCTAGAGTGCTAGACTGGCAAAGCGACGCCCGAGTGGAGTGCCCGCTTAGTTTTAATCCTCTCTTTTTCatccaaacttaaaaaaaaaaaaaaaaaacggaacaaaaatgtttaactgtactttactgtaagTCAGAGCTGGAGTTACACTAGTGTTTGTCTTCTTTTGAATGGGTTTGAAATACGAGCTGATGGCGTGTGATAAGGTTCTGCAGGTGTGTTAAACCACAGAGTGGTTATAACATGCTTGTGAACACCCCACCGGCGACCACGACAGGTGGACGAGCTGCACCAGAGGAGGAACCTATAACCCCCTGCACGGCACAGAGCCACGAGCTGACTTTGGTCTCACAAGTTGCCCTCTTTGACGTTAATGTAGCgttatttaaaaaggaaaaacagacttaaaaaaaaaaaaaacagttcagttcAATCAACTTCATACCTTAGCATTAGATTCTTGgcattttgtgtaaaaaaaaaaacaaacaaaaaaaaacaaagtatagTTTTTATAATCCTTTTTATATAAATCGAGACTGTTGTAACAGCGCTgaagtcatttttaaatatataaaaaaggaaaaaagggagTGTGAAGATCAAGCCCTCCACATGGATCGACTCATCACCTGCCCGACTCATCACAGCTGACTCGCTGCATCACTGGAAGCCCTGGATGAGCTCCGCCCTTAGGAATGCTACTGTCTGACGTCGCTGTAACGTTGTTTTATCGCATCATACTAAACGATAGTAGAAGCACAGTCTGTTTGGCCTTGAGAGCTCTTTATAGGTTATCAACGAATAAACTGCAGCATCCTATCACTATGTGATGTTTCTGTACATCTTACTGTAACTGAGTTTATTTATCACAGGTTAGGCAACTGAACACTATTGGCTTATTTATTTCACTGTTTCGGGTTAGTCTTAGCCTCTCGTGTGAAACGTGCACCCCAAGGATTATCGTAAGATTGTGCTCGTAAGTGAACGGAACAGCGGTTTAAAACTTGCACaaacagaaatgttttaaaagtttttcttttaaaagatcTACTCTCATCCCAGCCTGAAACTGAGGTTAAAATTTACCAAAAGTTTTGGCAGAATAGTGCTTTGAgaagcaccccccccccccacccaaccCCTTTCCTTTATTCCATTTTTATAAGTTAAGGGATCTCTGGATGTGGATAGATAGTTTGATGAATCACAGAATCAATCTGAGAAGATTCTGTCCCCACATTATCCTGTAAAACCATTTTATTTTCAAGCGTACAATTTATGGTGTAACTAAAGACCTTTTGTTTGTGTAATGCATGATTAATACATCAAAGTATTTTTTCTAGTCTTcccataaaaggaaaaaaaaaaaaccttctgatCAGTTTGGAATTTTGATGagttttgtaagttttttttttttttttttttttttttttgatttacAAACTATGGATttgcagattaaaaaaaaattgtaccaCATAGCAAAGTACAACTGTTGAAAagtaatgtatataaaatgtctataataaatattaaatggtGTACCTGTATATGCAA

Function

symbol description
strn3 Predicted to enable armadillo repeat domain binding activity; calmodulin binding activity; and protein phosphatase 2A binding activity. Predicted to be located in membrane. Predicted to be active in dendrite. Is expressed in somite and tail bud. Orthologous to human STRN3 (striatin 3).

NR:

description
striatin-3

GO: NA

KEGG:

id description
K17608 STRN1_3_4; striatin 1/3/4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022672612.1 True 4167 mRNA 0.47 16 3881319 3909335
XM_022672614.1 False 4166 mRNA 0.47 16 3881319 3909337

Neighbor

gene id symbol gene type direction distance location
ankrd9 NA coding downstream 577752 3302159 ~ 3303567 (-)
LOC103025229 acta1,act2,LOC105024319,LOC108430668,LOC102689871 coding downstream 976671 2900144 ~ 2904648 (-)
LOC103024903 LOC108430667 coding downstream 985638 2881109 ~ 2895681 (-)
LOC103025537 LOC108430628,LOC108269477,LOC107745352,LOC107711907 coding downstream 1005683 2869496 ~ 2875636 (-)
LOC111193124 LOC108270491,LOC108234815 coding downstream 1129063 2673416 ~ 2752256 (-)
hectd1 hectd1,LOC107582380,LOC107733112,LOC107697712,LOC107719534,LOC107694830,LOC100380626 coding upstream 8319 3917656 ~ 3952193 (-)
heatr5a heatr5a,LOC108412624,LOC107697711,LOC107733168 coding upstream 46989 3956326 ~ 3991775 (-)
mis18bp1 NA coding upstream 85223 3994560 ~ 4006610 (-)
mdga2 mdga2,mamdc1 coding upstream 137726 4047063 ~ 4277821 (-)
pole2 pole2 coding upstream 380166 4289503 ~ 4298158 (-)
G78039 coch,LOC107697714,LOC107719487,LOC107590906,LOC107733111,LOC107694797 non-coding downstream 2065 3876755 ~ 3879254 (-)
LOC111193171 coch non-coding downstream 8891 3870561 ~ 3872428 (-)
G78022 g2e3 non-coding downstream 55704 3823445 ~ 3825615 (-)
G78019 NA non-coding downstream 66586 3813935 ~ 3814733 (-)
LOC111193170 NA non-coding downstream 242404 3633094 ~ 3638915 (-)
G78044 NA non-coding upstream 13978 3923315 ~ 3993581 (-)
G78054 NA non-coding upstream 103415 4012752 ~ 4013009 (-)
G78087 NA non-coding upstream 205435 4114772 ~ 4115105 (-)
G78131 NA non-coding upstream 398180 4307517 ~ 4309637 (-)
G78140 klhdc2 non-coding upstream 417643 4326980 ~ 4327648 (-)
G78023 scfd1 other downstream 40749 3834562 ~ 3840570 (-)
prkd1 prkd1,LOC107590910,LOC107719483,LOC107733145 other downstream 166962 3645097 ~ 3714357 (-)
G77892 NA other downstream 532330 3297582 ~ 3348989 (-)
bmf bmf other downstream 674633 3175798 ~ 3206686 (-)
LOC103029757 LOC108430670,LOC108269994 other downstream 836556 2964024 ~ 3044763 (-)
G78083 NA other upstream 136097 4045434 ~ 4206384 (-)
G78297 kdm1a other upstream 1275455 5184792 ~ 5186358 (-)
LOC111193177 kcnh1,LOC108433307,LOC106904951,LOC103476431,LOC102309410,LOC103370850,LOC103137420,LOC101155792 other upstream 3289572 7198909 ~ 7220854 (-)
LOC111193183 NA other upstream 4567060 8476397 ~ 8517648 (-)
spdya spdya other upstream 4723309 8632646 ~ 8641832 (-)

Expression


Co-expression Network