nphp1 (nphp1)


Basic Information

Item Value
gene id nphp1
gene name nphp1
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 6749118 ~ 6768199 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022672639.1
tctccaaaaCCACAACGAAGAttcgattaaaaaaaagaatcggTTCAAATGATCCGAAGAGTTGGCCATCGCTCTTAGCAACCATCTGCGGCGTCCTCCACAGAGCGGTGTGGGATTCCTGTGTTAAAGTAAATCAGCGCTGATTTAACGAGGTTTTAACCGGTTATGGGACTAATTTTGACTGGAGGTTTTGTAGGAAGAGTGGAATAATATGGCTCCGAGAAAGAAAGGTCCTCTGCAAACGGTGCAAAAGGAAACAGACGACATTAAAAAACGGGTCGACGCTTTGGTGCGGGATGTGAACAGACTGGGTGTGTCTGAGGGAACAGAGTCactacagagGTGTTCAGAGCTGCAGAACACAGTGACTGCGACTTTGGAGAGGCTCAAGAAGTTAACGAAAGCGGAGGAGTCAGCTCCAATAGGGAACTATGAGCAGCTTAAAAGAGATGAAGAGGAACGTCTCAGGGCTCAACAGGACCGACTGAAAGCTCTGGCACAGAAGCTGCAGCCTGAGGACAACTCAACGGAGGGTGAGGAGGACAGTGCTGAAGAAGACAGCGAGGAGGAGGATGAAAGCCAGGAagaagatgaggaagatgatGTTCACAATGATAAAACCAAAGAAGATGCTGCTGACGATGAAGTTGATGAAACTGCACAAAACTACACAGCTAGAAAGGGCATTAGAACCTATGTGGCTCTTAGTGACTTCacaggagaggaggagggggaCCTTACTGTAcagAAAGGGGCTGTTCTGAGAGTCCTTCAGAAGAATGAGGATGGATGGTGGCTTGCCCAAGACGCAAAGGGGAACAAGGGCTTGGTGCCCAGAAACTACCTCAAGGTGATTTCCCCACATGACCAGGGTCGGGACACCGAGGAGGAGGAGAGTGATGAAGAGCAGGGGGATGGCAAGAAAATTGCTGAAGACAAACAAAGAACACTGCAAAATTGGGATACCATCCGAAGGGCCGTCACTGAGaTTGATGCAACAGATGTGCTGTCTGCAATGGGAGCAATTCCCCCAGGATTTAGAACCTCAACACTGTCCAGACTGCTGGAGGAAGGTACTTCATACAGAGCTAGTCATTACATTCAGCCcaggctcagccaatcagagctctGCTTTAAAGACCTCCAAATGGACCCAGACACTGGCAAGgtTCACTCGCGCTCGTCTCGAGTGTGTTTAACTGTGACTTTATGGAGCTGCAGGATGATCCCACCTCCTGGGGTGGGTCTACAAGTCCTCAGCAGGCATATTCGCTTCTGTGCTTTTAATGGGACTGAGGTATTGAGTAACATACACACAGTCAGAGCTACGTACAACCCAaccagtccaaaaacatggagctTCTCACCAAGGATGAGCAATATGCTGCCCTGTCTGCTGGATGGGGATTGTTTTATACGCTGTGATTCGGACTCCCCTGAACTGGGAATCCTGTTTGAGTTGGGCATCACCTACATTAGAAATTCcacaggagagagaggagatctGAGTTGTGGTTGGGCCTTCTTGAAACTTTTTGATGAAAATGGAGCACTTATTCCTCTACGaacaTATGAGCTCACAGTCCATGGAGGGACCCCATATGAGGCTGAGGCTGATGCAGATGCCACATCTACTAAAAGAGgcaCTAGTACTGGTGTGCTTCAGCAGATGCTGTTGTCTAGGAAGTTGCCCAAACTCATAGTCAAGCTCAAGCCTCCAAAGACTCGCGTGAGAGAACAGCTCAAtttgCTGCCTGATACTATAACAGGCTGCCTGTCCACAGTCCACCTGCTGTCTCTATATCGACAGTTGCTTGCAGATGCATTGCTTTTGGATCGGGTCACTATGCAGAATGCAGATCTGATCTGCAATGCAGTTCTAGCTACTTTCCCAGGGGTTCTGGATCAGTCTGACCTGATGGATGCTTTCAGAAAATTGTGGACTGAGTCCGAAAGCAACCTGAAGAGGTCTGAGAAGAAGGACATAACAGTACTGAAGAAGCATTTCGAGAGTGTGTACATGAGTGGCGTGTTCCCGCTACTTCACTCAGCTGAGATGCCAGTGTATTTCTGGGCCGACGAGAACACAGAGAACCAGCGGGCCCGTCTCATCTACAGCCCTGAACACAAGATCAGCAGAGAAACCATGCTGTCCTCCAGTCATACTCACCAAGCCTTTGACATCTCTCAGGTCAGCTATGACCTCCTCACCTCTGCCTGGCGATGACGAGTCCCTGCCCAGCTCAAAAACAAGACTGGCCAATCAGAACCATTTCTGCACCAATCCACAATAAATGCTGGACTAAACAGGCA

Function

symbol description
nphp1 Acts upstream of or within glial cell development; pronephros development; and retina development in camera-type eye. Predicted to be active in cilium and cytoplasm. Human ortholog(s) of this gene implicated in Bardet-Biedl syndrome; Joubert syndrome 4; Senior-Loken syndrome; nephronophthisis; and nephronophthisis 1. Orthologous to human NPHP1 (nephrocystin 1).

NR:

description
unnamed protein product, partial

GO:

id name namespace
GO:0048793 pronephros development biological_process

KEGG:

id description
K19657 NPHP1; nephrocystin-1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022672639.1 True 2313 mRNA 0.49 20 6749118 6768199

Neighbor

gene id symbol gene type direction distance location
LOC103024548 NA coding downstream 26842 6713456 ~ 6722276 (-)
LOC103024242 LOC108430197 coding downstream 41157 6689304 ~ 6707961 (-)
luzp1 luzp1 coding downstream 1486122 5210729 ~ 5262996 (-)
togaram1 NA coding downstream 2070708 4666571 ~ 4678410 (-)
fancm NA coding downstream 2083631 4624101 ~ 4665487 (-)
LOC103025187 crip3,LOC107583529,LOC107744353,LOC107553273,LOC107717123,LOC107663266 coding upstream 126729 6894928 ~ 6924055 (-)
acss1 NA coding upstream 161571 6929770 ~ 6963428 (-)
LOC103026718 kcnh1a,LOC108433307,LOC107721370,LOC107659257 coding upstream 322846 7091045 ~ 7193590 (-)
LOC111193180 NA coding upstream 508201 7276400 ~ 7277784 (-)
iars2 iars2,LOC107654863,LOC107659255,LOC107582886,LOC107583609,LOC107715938 coding upstream 548347 7316546 ~ 7337779 (-)
G78450 NA non-coding downstream 703 6747959 ~ 6748415 (-)
G78464 NA non-coding downstream 1336 6746078 ~ 6747782 (-)
G78463 NA non-coding downstream 3562 6744965 ~ 6745556 (-)
G78455 NA non-coding downstream 19057 6729839 ~ 6730061 (-)
G78453 NA non-coding downstream 22264 6726646 ~ 6726854 (-)
G78466 NA non-coding upstream 561 6768760 ~ 6768961 (-)
LOC111193175 NA non-coding upstream 1922 6770121 ~ 6772903 (-)
G78492 NA non-coding upstream 67933 6836132 ~ 6838095 (-)
G78560 NA non-coding upstream 117906 6886105 ~ 6886572 (-)
G78563 NA non-coding upstream 121979 6890178 ~ 6890405 (-)
G78297 kdm1a other downstream 1562760 5184792 ~ 5186358 (-)
G78083 NA other downstream 2542734 4045434 ~ 4206384 (-)
G78023 scfd1 other downstream 2908548 3834562 ~ 3840570 (-)
prkd1 prkd1,LOC107590910,LOC107719483,LOC107733145 other downstream 3034761 3645097 ~ 3714357 (-)
G77892 NA other downstream 3400129 3297582 ~ 3348989 (-)
LOC111193177 kcnh1,LOC108433307,LOC106904951,LOC103476431,LOC102309410,LOC103370850,LOC103137420,LOC101155792 other upstream 430710 7198909 ~ 7220854 (-)
LOC111193183 NA other upstream 1708198 8476397 ~ 8517648 (-)
spdya spdya other upstream 1864447 8632646 ~ 8641832 (-)
LOC111193185 stac,LOC107715935,LOC107670884 other upstream 1882429 8650628 ~ 8655017 (-)
LOC103027354 LOC103027354,LOC108438753 other upstream 3266487 10034686 ~ 10071884 (-)

Expression


Co-expression Network