LOC103026718 (kcnh1a,LOC108433307,LOC107721370,LOC107659257)


Basic Information

Item Value
gene id LOC103026718
gene name kcnh1a,LOC108433307,LOC107721370,LOC107659257
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 7091045 ~ 7193590 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022672646.1
GATATTACCTACTAATTTTGACGTTAGCTAGATGTTAGGTCTTCTTATGTTAGCTTTATGATCACCCAACCAGCTGTTTAAACTACTAAACATTGAGAAATGTTTTTCATTAGGTTGTGAGgatgtttattgatggtgttaCCTGTGTGCGCAGGTTGGGGTAAATTTGCACGCTTGACCCGAGCTCTGACCAGCAGCAGAGGAGTTCTACAGCAGCTCCAGCCTACCGTTGCCAAAGGAGAGAACGTTCACAAGCACTCGCGGCTGGCTGAGGTTCTCCAGCTGGGTTCCGACATCCTCCCCCAGTACAAGCAAGAGACTCCCAAGACCCCACCCCACATCATCCTTCACTACTGCGCCTTCAAGACCACCTGGGATTgggtcatcctcatcctcaccttCTACACGGCCATCATGGTACCCTACAACGTGTCCTTCAAGACCAAGCAGAACAACGTCACCTGGCTGGTGGTGGACAGCATCGTGGACGTTATCTTTCTGGTGGACATTGTGCTGAATTTCCACACCACCTTCGTGGGGCCGGCCGGGGAGGTGATCTCCGACCCGAAGCTCATCCGAATGAACTATCTTAAGACCTGGTTCGTCATTGACCTGCTGTCCTGTCTGCCCTATGATGTCATCAACGCCTTCGAGAACGTGGATGAGaacTGGAACCATCGGGCTGTCACTCAAGGCATCAGCAGCCTCTTCAGCTCTCTGAAAGTGGTGCGCTTGCTGCGCCTGGGCCGGGTCGCCCGCAAGCTGGACCACTACATCGAGTACGGCGCGGCCgtgctggtgctgctggtgtGCGTCTTCGGCCTGGCCGCTCACTGGCTGGCCTGCATCTGGTACAGCATCGGGGATTACGAGGTCATCGACGAGGAGCGTAACCTGGTGCGTAAGGACAGCTGGCTGTACCTGCTGGGCGAGACCATGGGCATGCCGTACCGCTTCAACAGCAGCGGCTCGGGCCGCTGGGAAGGCGGTCCCAACAAGGACTCGGTCTACATCACCTCGCTGTACTTCACCATGACCAGCCTGACGAGTATTGGCTTTGGCAACATCGCCCCCACCACTGATGGAGAGAAGATCTTCGCGGTGGCCATGATGATGATCGGATctCTCCTCTACGCCACCATCTTCGGTAACGTGACCACCATCTTCCAGCAGATGTACGCCAACACTAACCGCTACCACGAGATGCTGAACAGCGTGAGAGATTTCCTCAAACTCTACCAGGTGCCCAAAGGCCTGAGCGAGAGAGTGATGGATTACATCGCCTCCACGTGGTCCATGTCCAGAGGCATCGACACCGAGaaggtgcTGCAGATTTGTCCTAAAGACATGCGGGCTGATATCTGCGTTCACCTGAACAGGAAGGTGTTTAAGGAGCATCCTGCGTTCCGATTGGCCAGTGACGGCTGCCTGCGGGCGCTGGCCATGGAGTTCCAGACCATTCACTGCGCTCCAGGGGACCTGATCTATCACGCCGGAGAGAGTGTGGACAGCCTCTGCTTTGTGGTCTCGGGGTCACTGGAGGTCATCCAGGACGACGAGGTGGTTGCTATTCTAGgtaagggcgacgTGTTCGGTGACGTGTTCTGGAAGGAGGTAACCCTGGCGCAGTCGTGTGCGAACGTGAGGGCGCTGACCTACTGCGACCTGCACGTGATCAAACGCGACGCTCTGCAGAAAGTGCTGGAGTTCTACACGGCCTTCTCCAACCACTTCTCCCGCAACCTGCTGCTCACATACAACCTCCGCAAGCGCaTTGTCTTCAGGAAGATCAGTGATGTTAAGCGTGAGGAAGAGGAGCGACTGAGGAGGAAGAATGAGGCACCGCTCAACCTTCCTCCAGACCATCCAGTGCGGCGTCTCTTCCAGCGTTTCCGACAGCAGAAGGAAGCCCGGCTGGCTGTGGAGCGTCCGAACTCTGAGGATCCGGATGTAGAGAAGGGTCGTGCCCACAATGAGCTCGTCATCGTCCAGGATGCGGTCACCATCGCCACCACCAGTGTTGTCACTGTGACAGAAAGCCCAGCCACGCCAATCCCCTCAAACCCAACTCATAGTGTGCTTGGCCCTGGCCCCTCCGACCGGGCCAAGCTGCAGGCCCCCAGTGCCCTAGGAGGCGGTGGTAACCGGCCGTCTCGAGGATGGGGGCGTTTCCGGGAAAGCATGGCCAAACCGGACGGCTGGGGCAACGTAGCCAAAGCCGAGTCGATGGAAACACTTCCCGAACGAGGCTGCAAGTCAGCCGAGCCTGGCGGCCTGAAAAAAACAGACTCCTGTGACAGTGGCATCACCAAGAGTGACCTCAGACTGGACGAGGGTGGAGCACGGACACCTGTAGACCACAGTCCTGTTCTGCCTGAAGGGAGGCCACCACCCACTGTCCCGCCCTCAATACCGCCCATCCcagaacacacactccacacggCGGTACTGGAGCTCCGGACTGAACTCAAGGACGAGCTCTCGGCACTCGGAGACCGCATGGTCGCACTGGAGACGCAGGTCGCCGAGGTGCTGCGGTTGCTAAGGGGTGGAAAGACTCCATCATCCCCAATCCCCCTCTTTCAGATCTCGAGACCCACATCACCAGACTCAGACAAGGATGATATTTTCTCATAAAATAGGGGTTCTCGGCTCCAGTCTTGGGACCTTCTTTGTCCAGAACTGTTTAATCTGCCTAATCCAGCTCCAGACAGGCTTGATAACTGACCTGTTCACTCTCAAAGTCCACAAGTTCTGCTGTAGCATtgcttttcttttaataaccttaaaaaaaaaacaataatccaTGTTGAAGGAAAGGTTTGGAGACACTATTTGGTCGTTATCTCAATTGTTATCTCATCAATCAACCAAGATGTTCTGGTGTCCAAATTGAGTTCTTTTTagtttagcactggagctacaaaaCTAACGCTACTGACTTGACTGGATGTGAAGAAGCGTCTACATGTTCCTCCTCCAAAACATGGCCAAAGAATCTAGTATAATTCACTTTGATGTATAAACATTCACAGTCCCCACGTACACAGGGTGTGgactttttctgttttctatattagccttgtagctcctaTTCTAGACTAAACCATTCTAAACATTTACAGGAAATGATGtagattatatttttctttaaaccatttttaaaatatgagaTATATACTGATGTCAAAAGTAATGGGGCAGGATCTAGCTTTGGAGTCCCGTAAATTTTGCCATGTACCATGGAGGCCAaataatgctgcactgacctgtgggatatgcatgtggGACCTTCTGCagtaaatgtggatgtgatttcttaAATAGTCGCTTGTCTTTTCCCAAAGACAAATCGAATCCAGATGCCGCCGCCCACAATTACCACATTACTACCCACCGTCTGTCCACTTATGGGACATACTGCAACTCCAATAAAGTTGTCATGTTGCCTTGCCTTGAGCACATTGGCTTtgagtgtttaacctcactcataAGATATCACCTCACGGCGT
>XM_022672647.1
GATATTACCTACTAATTTTGACGTTAGCTAGATGTTAGGTCTTCTTATGTTAGCTTTATGATCACCCAACCAGCTGTTTAAACTACTAAACATTGAGAAATGTTTTTCATTAGGTTGTGAGgatgtttattgatggtgttaCCTGTGTGCGCAGGTTGGGGTAAATTTGCACGCTTGACCCGAGCTCTGACCAGCAGCAGAGGAGTTCTACAGCAGCTCCAGCCTACCGTTGCCAAAGGAGAGAACGTTCACAAGCACTCGCGGCTGGCTGAGGTTCTCCAGCTGGGTTCCGACATCCTCCCCCAGTACAAGCAAGAGACTCCCAAGACCCCACCCCACATCATCCTTCACTACTGCGCCTTCAAGACCACCTGGGATTgggtcatcctcatcctcaccttCTACACGGCCATCATGGTACCCTACAACGTGTCCTTCAAGACCAAGCAGAACAACGTCACCTGGCTGGTGGTGGACAGCATCGTGGACGTTATCTTTCTGGTGGACATTGTGCTGAATTTCCACACCACCTTCGTGGGGCCGGCCGGGGAGGTGATCTCCGACCCGAAGCTCATCCGAATGAACTATCTTAAGACCTGGTTCGTCATTGACCTGCTGTCCTGTCTGCCCTATGATGTCATCAACGCCTTCGAGAACGTGGATGAGGGCATCAGCAGCCTCTTCAGCTCTCTGAAAGTGGTGCGCTTGCTGCGCCTGGGCCGGGTCGCCCGCAAGCTGGACCACTACATCGAGTACGGCGCGGCCgtgctggtgctgctggtgtGCGTCTTCGGCCTGGCCGCTCACTGGCTGGCCTGCATCTGGTACAGCATCGGGGATTACGAGGTCATCGACGAGGAGCGTAACCTGGTGCGTAAGGACAGCTGGCTGTACCTGCTGGGCGAGACCATGGGCATGCCGTACCGCTTCAACAGCAGCGGCTCGGGCCGCTGGGAAGGCGGTCCCAACAAGGACTCGGTCTACATCACCTCGCTGTACTTCACCATGACCAGCCTGACGAGTATTGGCTTTGGCAACATCGCCCCCACCACTGATGGAGAGAAGATCTTCGCGGTGGCCATGATGATGATCGGATctCTCCTCTACGCCACCATCTTCGGTAACGTGACCACCATCTTCCAGCAGATGTACGCCAACACTAACCGCTACCACGAGATGCTGAACAGCGTGAGAGATTTCCTCAAACTCTACCAGGTGCCCAAAGGCCTGAGCGAGAGAGTGATGGATTACATCGCCTCCACGTGGTCCATGTCCAGAGGCATCGACACCGAGaaggtgcTGCAGATTTGTCCTAAAGACATGCGGGCTGATATCTGCGTTCACCTGAACAGGAAGGTGTTTAAGGAGCATCCTGCGTTCCGATTGGCCAGTGACGGCTGCCTGCGGGCGCTGGCCATGGAGTTCCAGACCATTCACTGCGCTCCAGGGGACCTGATCTATCACGCCGGAGAGAGTGTGGACAGCCTCTGCTTTGTGGTCTCGGGGTCACTGGAGGTCATCCAGGACGACGAGGTGGTTGCTATTCTAGgtaagggcgacgTGTTCGGTGACGTGTTCTGGAAGGAGGTAACCCTGGCGCAGTCGTGTGCGAACGTGAGGGCGCTGACCTACTGCGACCTGCACGTGATCAAACGCGACGCTCTGCAGAAAGTGCTGGAGTTCTACACGGCCTTCTCCAACCACTTCTCCCGCAACCTGCTGCTCACATACAACCTCCGCAAGCGCaTTGTCTTCAGGAAGATCAGTGATGTTAAGCGTGAGGAAGAGGAGCGACTGAGGAGGAAGAATGAGGCACCGCTCAACCTTCCTCCAGACCATCCAGTGCGGCGTCTCTTCCAGCGTTTCCGACAGCAGAAGGAAGCCCGGCTGGCTGTGGAGCGTCCGAACTCTGAGGATCCGGATGTAGAGAAGGGTCGTGCCCACAATGAGCTCGTCATCGTCCAGGATGCGGTCACCATCGCCACCACCAGTGTTGTCACTGTGACAGAAAGCCCAGCCACGCCAATCCCCTCAAACCCAACTCATAGTGTGCTTGGCCCTGGCCCCTCCGACCGGGCCAAGCTGCAGGCCCCCAGTGCCCTAGGAGGCGGTGGTAACCGGCCGTCTCGAGGATGGGGGCGTTTCCGGGAAAGCATGGCCAAACCGGACGGCTGGGGCAACGTAGCCAAAGCCGAGTCGATGGAAACACTTCCCGAACGAGGCTGCAAGTCAGCCGAGCCTGGCGGCCTGAAAAAAACAGACTCCTGTGACAGTGGCATCACCAAGAGTGACCTCAGACTGGACGAGGGTGGAGCACGGACACCTGTAGACCACAGTCCTGTTCTGCCTGAAGGGAGGCCACCACCCACTGTCCCGCCCTCAATACCGCCCATCCcagaacacacactccacacggCGGTACTGGAGCTCCGGACTGAACTCAAGGACGAGCTCTCGGCACTCGGAGACCGCATGGTCGCACTGGAGACGCAGGTCGCCGAGGTGCTGCGGTTGCTAAGGGGTGGAAAGACTCCATCATCCCCAATCCCCCTCTTTCAGATCTCGAGACCCACATCACCAGACTCAGACAAGGATGATATTTTCTCATAAAATAGGGGTTCTCGGCTCCAGTCTTGGGACCTTCTTTGTCCAGAACTGTTTAATCTGCCTAATCCAGCTCCAGACAGGCTTGATAACTGACCTGTTCACTCTCAAAGTCCACAAGTTCTGCTGTAGCATtgcttttcttttaataaccttaaaaaaaaaacaataatccaTGTTGAAGGAAAGGTTTGGAGACACTATTTGGTCGTTATCTCAATTGTTATCTCATCAATCAACCAAGATGTTCTGGTGTCCAAATTGAGTTCTTTTTagtttagcactggagctacaaaaCTAACGCTACTGACTTGACTGGATGTGAAGAAGCGTCTACATGTTCCTCCTCCAAAACATGGCCAAAGAATCTAGTATAATTCACTTTGATGTATAAACATTCACAGTCCCCACGTACACAGGGTGTGgactttttctgttttctatattagccttgtagctcctaTTCTAGACTAAACCATTCTAAACATTTACAGGAAATGATGtagattatatttttctttaaaccatttttaaaatatgagaTATATACTGATGTCAAAAGTAATGGGGCAGGATCTAGCTTTGGAGTCCCGTAAATTTTGCCATGTACCATGGAGGCCAaataatgctgcactgacctgtgggatatgcatgtggGACCTTCTGCagtaaatgtggatgtgatttcttaAATAGTCGCTTGTCTTTTCCCAAAGACAAATCGAATCCAGATGCCGCCGCCCACAATTACCACATTACTACCCACCGTCTGTCCACTTATGGGACATACTGCAACTCCAATAAAGTTGTCATGTTGCCTTGCCTTGAGCACATTGGCTTtgagtgtttaacctcactcataAGATATCACCTCACGGCGT

Function

symbol description
kcnh1a Enables voltage-gated potassium channel activity. Acts upstream of or within hindbrain formation and somitogenesis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in heart; nervous system; pleuroperitoneal region; and trunk. Human ortholog(s) of this gene implicated in colorectal adenocarcinoma. Orthologous to human KCNH1 (potassium voltage-gated channel subfamily H member 1).

NR:

description
PREDICTED: potassium voltage-gated channel subfamily H member 1-like isoform X1

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0042391 regulation of membrane potential biological_process
GO:0001756 somitogenesis biological_process
GO:0021576 hindbrain formation biological_process
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0000160 phosphorelay signal transduction system biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0000155 phosphorelay sensor kinase activity molecular_function
GO:0005249 voltage-gated potassium channel activity molecular_function

KEGG:

id description
K05391 CNGC; cyclic nucleotide gated channel, plant

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022672646.1 True 3512 mRNA 0.53 8 7091045 7193590
XM_022672647.1 False 3485 mRNA 0.53 7 7091045 7193590

Neighbor

gene id symbol gene type direction distance location
acss1 NA coding downstream 127617 6929770 ~ 6963428 (-)
LOC103025187 crip3,LOC107583529,LOC107744353,LOC107553273,LOC107717123,LOC107663266 coding downstream 166990 6894928 ~ 6924055 (-)
nphp1 nphp1 coding downstream 322846 6749118 ~ 6768199 (-)
LOC103024548 NA coding downstream 368769 6713456 ~ 6722276 (-)
LOC103024242 LOC108430197 coding downstream 383084 6689304 ~ 6707961 (-)
LOC111193180 NA coding upstream 82810 7276400 ~ 7277784 (-)
iars2 iars2,LOC107654863,LOC107659255,LOC107582886,LOC107583609,LOC107715938 coding upstream 122956 7316546 ~ 7337779 (-)
qrsl1 qrsl1,LOC107654864,LOC107716014,LOC107659251,LOC107583393 coding upstream 196946 7390536 ~ 7410350 (-)
crybg1 NA coding upstream 241027 7434617 ~ 7545317 (-)
clic4 clic4,LOC107721318,LOC107659249 coding upstream 353862 7547452 ~ 7589335 (-)
G78568 NA non-coding downstream 163001 6927373 ~ 6928044 (-)
G78566 NA non-coding downstream 184181 6898752 ~ 6906864 (-)
G78563 NA non-coding downstream 200640 6890178 ~ 6890405 (-)
G78560 NA non-coding downstream 204473 6886105 ~ 6886572 (-)
G78492 NA non-coding downstream 252950 6836132 ~ 6838095 (-)
G78639 NA non-coding upstream 147089 7340679 ~ 7340982 (-)
G78638 NA non-coding upstream 149575 7343165 ~ 7346439 (-)
G78642 NA non-coding upstream 168184 7361774 ~ 7362155 (-)
G78643 NA non-coding upstream 168629 7362219 ~ 7362436 (-)
G78861 NA non-coding upstream 546426 7740016 ~ 7740593 (-)
G78297 kdm1a other downstream 1904687 5184792 ~ 5186358 (-)
G78083 NA other downstream 2884661 4045434 ~ 4206384 (-)
G78023 scfd1 other downstream 3250475 3834562 ~ 3840570 (-)
prkd1 prkd1,LOC107590910,LOC107719483,LOC107733145 other downstream 3376688 3645097 ~ 3714357 (-)
G77892 NA other downstream 3742056 3297582 ~ 3348989 (-)
LOC111193177 kcnh1,LOC108433307,LOC106904951,LOC103476431,LOC102309410,LOC103370850,LOC103137420,LOC101155792 other upstream 5319 7198909 ~ 7220854 (-)
LOC111193183 NA other upstream 1282807 8476397 ~ 8517648 (-)
spdya spdya other upstream 1439056 8632646 ~ 8641832 (-)
LOC111193185 stac,LOC107715935,LOC107670884 other upstream 1457038 8650628 ~ 8655017 (-)
LOC103027354 LOC103027354,LOC108438753 other upstream 2841096 10034686 ~ 10071884 (-)

Expression


Co-expression Network