clic4 (clic4,LOC107721318,LOC107659249)


Basic Information

Item Value
gene id clic4
gene name clic4,LOC107721318,LOC107659249
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 7547452 ~ 7589335 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022672655.1
TGTGGTCTGCTTCAGCTCCGCTTCTACTGGCTCACCATCCCGAGTCCGAGTCCGACTTAAACACCGAGAGAAGGCGCTGGAGACTGTCTGTCTCACTGCAGAGATGCCTAACTGACCCGCAGGAGCCTGTGGAATTAAATTATACATTCAGCTTCATATAAAACAGAGTCAGAGTTTGTGTCCAGAAAGGCGTTTCTGCTCCAACAAAGGAGGCCAGTGTGAGAGAACGCGGCCCCGCGTAGCGTTCACTCGTTTCGGGGGAGAGGTAGGAGGAGGAGCACGCCTGTTTCAGGACTGTGTGGAAAGAAAAAGGAGGgagctgggaaaaaaaacttttggagGGCGAGGACTTCAGGCCCCGTTTTATAAAGAATATCCAGCAGCTTTAAACGGAGAAAACTTCAGCCATGTCCCTGTCGGTGCCACAGAACGGCCGAGGAGAAAACGAGCCCGTTATTGAGCTTTTCGTGAAGGCGGGCAGCGATGGAGAGAGCATAGGAAACTGCCCATTCTCTCAGCGTCTTTTCATGATCCTGTGGTTAAAGGGTGTGGTCTTCAATGTCACCACTGTCGACCTGAAGAGGAAACCAGCAGATCTTCAGAATTTAGCTCCTGGAACCCATCCTCCTTTCATCACATTTAATGGCGAGGTGAAGACCGACGTCAACAAGATCGAAGAGTTTCTAGAGGATGTTCTTAGCCCTCCCAAGTATTCCAAACTCGGAGCCAGGCATCCGGAGTCCAACACGGCTGGAATGGATATATTTGCCAAATTCTCTGCTTACATCAAGAACTCCAGACCTGATACCAATGAGGgtCTGGAGCGAGGCCTGCTGAAGACCCTCCAGAAGCTTGATGAGTACCTGCGCTCGCCGCTGCCTGATGAGATCGACCACAACAGCATGGACGACGACATCAAGGTCTCCGCCCGCAAGTTCCTGGATGGAGATGACATGACCCTGGCTGACTGCAACCTGCTGCCCAAGCTGCACATCGTTAAGGTGGTGGCTAAGAAGTACCGAGGCTTCGAGATCCCTAAAGACATGCTCGGTATCTGGGGCTACCTGAACAACGCATACACACGAGAGGAGTTCACCAACACCTGCCCCAGTGACAAGGAGATCGAGATCGCGTATGCCGATGTTGCCAAGAGGCTGGTCAAATAATGCCTTGCAAAGAAATTCCAGCCATCCCCAAATTCCCTCACTGGGACTGAattcttcttttgtttgtttcacacaagagagaaaaataactATGGActtcttttttccttctcttcttcttcttttttttctctctacagTAAACCCCACTGCATGATTATTTTTCTCCTCTAGCCCCTATATATCTATACACTTCTTTAAGATACTGCATTTATTGTCAGTGTAATCCAAAACGGTTCTTGACGAACTTCTGTATCTCAtgcatttctttctttacagttatttttatttttttatttttgttccaaGAGACATTTAAGCGTAAATGCAGGAAATGCCACGTACTGGAAATGTATGGGGTTGTGAGCATGTCTGAGCTTTGTTGGTTTTAGCCAGGATTGTTCAAacattctctcacacacacacacacacacacacacacaactctcgCTCCTCTCCCCCAACCCAGCGTAGCAGCGGAGAAGCAACGCCACCAGCTGTTTCTTCTCACAAAGATTTGTGATATTGCAAGTGTCTTTTACAGGCTTGCAGAGTGAGCATTTCAgagctgttgttttgttttatttttgttttgttctgttttctgATCGAGCGTATTTGAACAGTGTTGGAAGCTCCAGTGTTTATTTCTTGAGAGCGCTTCATCGAGCACTGACTGCTAACTTTATCAGACTCCGACAGCACGTgaagttaaacatttaaaaaaaaggcgaTTTTGGCTTGCTATTGGAGCAGTGGCCTTCTTGctaacctttttatttaaactccGCCCACTTGGCATGTTATTCAGTAAGCTTGCTAAGGCCTGATGTAAGCTAATCAAAAAAGGACACGGTTGAAGAGGATGCTCAGGTGGTCTGGCAGTGAGTCAGTGCTTAGAGTGACTAATTAACCATGCAGAAAATGTATTGTGCCCATGAAGGGTCAGATTATGAAGGGAATATACTTTGTGGGGTATTGTAGAATCtgaagtggatttttttttttaatatacagtttaaGTCCTACCTTAATAGAACTGTTGATAGCAAGTGTATACAGATATGCTTTAATCCCACTCAAAATGGGGCCAGcatttaatttcttattaataGAAGTACAGGAATTAAGGTGAACTGGTAGTTATGACTGATTCTGAAAATCTGATGCCCATGTTTTAGGACAGTAATGGTAATTTGCATGAAACTTTACAGCTAATTAGTTAAAGGTAAAGAGAAGAGACCCGGGAATCAGCAAATAGTTtgacaaaaaattaaatgaacacGATTGTTCACTGACTCCACATTAGAAAATATTAACTGAAAcgttcttacaaaaagcaagaaacttgtgtatttacattattttacttgCTCTTGTTGAAACAAATTAGTGTTTGAGTTTAGTAACAGTTTAAACCCAGtctttgttaaaaatgttagccAAGCATCTCTtgatataaactaaaaaacagaAGACCTCAGATATCAAACATGTCTGAGCTGATTGACTCTCTGGAGCCAGTGATTAATTGTGATAATTAGATTTTTCTACCAAAAATCCTAATAGGTGAATGTGTATCAgttaaaagaaaatacttttttaatttagataaacatgtaaaaaaaaaaaaaaagagaacagttTTTGTTTGGAATCATTTTAAGGCTGTTTTAAGACACATTTGTTAGCTGATTTATGTGACTTTTTCTTTTCAAGCTTTCAGAGACTGACGTGTGCATTTTGTACATCCGTGGATGTGAATGTAGCAGAGTGAGGGCTTTTCCTAGGTGCGAATTTTAATACTAGATGACACCTCACCTCAGGCCTCATTTTCTTATGGGTGTAAAATGCGATGTCTCATTTAGCCTTTCATTTAAAGTCAAcggtaaaaggaaaaaataaaagaagaagaaaatataattttgaaTTTGTATTGAACATTTACTTTGGTGGATATAGCAGGGTGCTGCAgtctaaaataaagaataaacttctttaaataaatgaaggcTTGTCTAAAAGTGCTGCAAGAAGTATAAGAAGTTCTTTCTGTTCTTGTTCCACTCCAGGGTAGGTTAGAAAGCAAGAGGCAGAGCTGGAGGCAATGGCTGCAAGTGCTTATGCCAACTCTACACAGCATCAGCTAAACTTACCAACCTGCTTTCTTACTGAGTGAAGAACGATGCAGGTTTATGTtgagctgaagctgctgctgtatTCAGAAAAGTTCCCACAGTGAAGGTCAAGGGGATTTCTCATGTAGTAAGATGATGTCTGATCTGTGTTCTCTGGTCAGCAGTACACTGTCTATATTACtgagaaacagtaaaaaaaacagattttacagtttttggttttattttctgAACATATGCTGCTTTTGTGAGCTCAACAGAGGTTTGTCCATCCCAGATGGTTAACTACTAAGTAATTATGACTTTACTGTGTACTGTGTCCAGGCACTTTGTCAGTAGATCAGCCCACTTAACACAAATAAGTGTTTGAGTGTAATGACCTgaacatttgattaaaaaaaaaaaaaagcttagtttGAACACATGCAGATAAGGTACAAGATTGTGGTATTCATCACATCTCGATACACAAAATCCACTCCATAAATTGTACAGTCAGTGAAGTGGTACAAATGGTATTTCCCAGTTCCTTCACCACTTGAATGCAGCAACAGTTTACTGCTTAATTACAATAAAGGTTAAAAATTAGaagtctgtactgtatatttgaaAATTAGTACTGTATTGCAAAACAGTACAGTGGTTTAGTAGATACAATGTTCTTCTTCCAGTGGGTTCAAGTCTCTGTTGATGTGGAAGGACTTTGCATTATCTCCACGTGTTTGTGGAGATTTCCCCCAGTAACTGCTTTtatcccacagtccaaaaagaAACAAGATGATCAGATAAATTGGATGTTCaaaaattgcccagaaaaaatgGACACACTTGAGcatatgtgtatttgtatggGTGTTCGCATATATGactgtatgcccagatatggattagCACTCTGTCCTGGCTCTGTCAATGGCTAAGTCTCTTATACAGTTCTCCAGGTGGACAGTCATTTCCAGTTAAGAGTATGCTGtatgtgattggctgctgctttcaGGTCTGCATTTGTAGTTAAGTGCTGATGTGTGTTGGTTAGTTGAGTGTGGAATGTGATTGTAATGCGTGCCTTGATGTCGAGAAAGGCATTATATAACTGTGATTTCAATCATCACAACAAAATATAGTGATTTAGAGTTTAATATATCAGTATTGTCCAATACCCCTTTTGAACAATGTCCTCTAACTAAGAAATCTGACTTTTGAGAAATCTCCTGTTACATAACTGTGGAGAAGATTTTGGTAACATCACAAAATCCAGTATGCAAAGAGTTTTTGGTTTATCAAAGTCCAAGATAAAGAGAACCACTGATAAGATGCCTGGCTAAACTAACCTGCAGTTACAGTACATATGAAGGAGTGGAATATAATGACATATTCAGCACACTTAGACAAACGATTCGTTTGCTTGTATCCGTCGTGAATCCTGGTCCTCTGAACTAAATCAGGTGCCTTCTGAGGATCAGTGTtatatggtgttgtattgtggTTTCGTTCAGTTTAACGTGTTCCCATTTGGAGGAAGAGAGGTGTTCCCTTCTTCCACTGATGTCTGAGATAATGAATGTTCTGAagttttgtgccttttttttgtttctttttgtagCCTCCATCAGCCTGAGTTTGCCTAAAGCACAGGGTACACACTGATCATGTAAACGCTGCATGTTTGCCATATGCCATCCTGCTCTCATCAATAAACTGCTGGCAGCTATGA

Function

symbol description
clic4 Predicted to enable chloride channel activity. Predicted to act upstream of or within chloride transport; glutathione metabolic process; and regulation of ion transmembrane transport. Predicted to be located in cytoplasm. Predicted to be part of chloride channel complex. Predicted to be active in nucleus. Is expressed in several structures, including axis; central nervous system; immature eye; mesoderm; and pericardial region. Orthologous to human CLIC4 (chloride intracellular channel 4).

NR:

description
PREDICTED: chloride intracellular channel protein 4

GO:

id name namespace
GO:0034765 regulation of ion transmembrane transport biological_process
GO:1902476 chloride transmembrane transport biological_process
GO:0044070 regulation of anion transport biological_process
GO:0016020 membrane cellular_component
GO:0005247 voltage-gated chloride channel activity molecular_function

KEGG:

id description
K05024 CLIC4; chloride intracellular channel protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022672655.1 True 5018 mRNA 0.41 6 7547452 7589335

Neighbor

gene id symbol gene type direction distance location
crybg1 NA coding downstream 2135 7434617 ~ 7545317 (-)
qrsl1 qrsl1,LOC107654864,LOC107716014,LOC107659251,LOC107583393 coding downstream 137102 7390536 ~ 7410350 (-)
iars2 iars2,LOC107654863,LOC107659255,LOC107582886,LOC107583609,LOC107715938 coding downstream 209673 7316546 ~ 7337779 (-)
LOC111193180 NA coding downstream 269668 7276400 ~ 7277784 (-)
LOC103026718 kcnh1a,LOC108433307,LOC107721370,LOC107659257 coding downstream 353862 7091045 ~ 7193590 (-)
srrm1 srrm1,LOC107659230,LOC107583602,LOC107721297 coding upstream 4304 7593639 ~ 7607630 (-)
LOC103026256 tdh2,LOC108433314,LOC107582959,LOC107583601,LOC105896089,LOC107721289,LOC107659247,LOC108269662 coding upstream 20298 7609633 ~ 7624460 (-)
LOC103025534 LOC108433315 coding upstream 40445 7629780 ~ 7649875 (-)
LOC111193181 NA coding upstream 157771 7747106 ~ 7758203 (-)
kbtbd11 kbtbd11,LOC102794541 coding upstream 222535 7811870 ~ 7820202 (-)
G78643 NA non-coding downstream 185016 7362219 ~ 7362436 (-)
G78642 NA non-coding downstream 185297 7361774 ~ 7362155 (-)
G78638 NA non-coding downstream 201013 7343165 ~ 7346439 (-)
G78639 NA non-coding downstream 206470 7340679 ~ 7340982 (-)
G78568 NA non-coding downstream 619408 6927373 ~ 6928044 (-)
G78861 NA non-coding upstream 150681 7740016 ~ 7740593 (-)
G78859 NA non-coding upstream 155968 7745303 ~ 7767327 (-)
G78871 NA non-coding upstream 173632 7762967 ~ 7765496 (-)
G78885 NA non-coding upstream 260418 7849753 ~ 7915212 (-)
G78889 NA non-coding upstream 388465 7977800 ~ 7981423 (-)
LOC111193177 kcnh1,LOC108433307,LOC106904951,LOC103476431,LOC102309410,LOC103370850,LOC103137420,LOC101155792 other downstream 326598 7198909 ~ 7220854 (-)
G78297 kdm1a other downstream 2361094 5184792 ~ 5186358 (-)
G78083 NA other downstream 3341068 4045434 ~ 4206384 (-)
G78023 scfd1 other downstream 3706882 3834562 ~ 3840570 (-)
prkd1 prkd1,LOC107590910,LOC107719483,LOC107733145 other downstream 3833095 3645097 ~ 3714357 (-)
LOC111193183 NA other upstream 887062 8476397 ~ 8517648 (-)
spdya spdya other upstream 1043311 8632646 ~ 8641832 (-)
LOC111193185 stac,LOC107715935,LOC107670884 other upstream 1061293 8650628 ~ 8655017 (-)
LOC103027354 LOC103027354,LOC108438753 other upstream 2445351 10034686 ~ 10071884 (-)
LOC103027264 NA other upstream 2705153 10294488 ~ 10336716 (-)

Expression


Co-expression Network