LOC111193181


Basic Information

Item Value
gene id LOC111193181
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 7747106 ~ 7758203 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022672661.1
GAAGGCAGGTACGCGGAAAGGGAGGAAGAatgtggagctgtgtgtgtcACTGCAGGGcaatttgactgtttttttactttttaaagttagaatgagttaaatatataaagccggggctggaggaggagaacatggGGCTGTGCTGCAGAAGTCTGAAGGATGAGAAGATCCTCATGAAGATGGGGTTGGGCTTGGTGCTGGCGGGCCATGTGAACTTCTTGCTGGGGGCCCTGATGCAGGGCAGTGTGCTGAGGGATGTGAAAGTGAGCGCTCAGTTTTCCACCTTAGAATACGCCATCACCAACATCATCGCTCTCGTAGCAGGACTCATGGGCATTATTGGAGGAATAATAGCCATCGTTCTctccaaaaacatgaaaaaacaggCACTGAAATGGTCATTATTAATGATGAGCATCCTGGCTTTCCTCCTGGGTGCTGCCTCTGCAGTGAGCGTCAGCATCTCCATGGTGAACGCCATCACTAACAGCGGCATGAGTCTACTGGCACAGTGCAATCTGAGCGGCAACATCAGCACCTACAACACCTACCGCATCACCAACGAGTGCCCCTTTGACCCCACCCGCATCTACGGGACTACTCTGATCCTGTGGGTGCTGCTGGTCCTGATGTCCATGGTGGAGGTGGTGTTCTCTGGACGTTGCTTCGTGGCCTGCACCGCGTTCCTGCGTCTGCCCTGCCCCTGGAGGAAGAGACCGGTTAATGCCAAAAGGAAGGGGCGTGTCCATTTCCCGGAGGAGTCCGTACCATCCTCACCTGTACCAGAGTCTTCCATCAACTGCCCAGAAGAGGAGGAACCAACGGAGGAAAACGACCTTCTAGATGCCACCTCACCTACCGAAGAGACCAGTGATTGGCTGTGAGCCAGAGGTCCTGCTCACCTGAGCCACAGGTGGACACTGCACACACCAAGTGCCACGCCCCTCTGGGACCAGTTTTTATATATGTGGACAAGTCGCAAAGTGAGCGCCAGCAGCATGGTGCCCTTGGTTCCCAGTTCTCTAACTGTATTGAACAGTTTCATTGTTCTGAGAAACTTTTCAAGTGGGCTAATAtactcactcactggccatattattagaaacaccagccttgtactttcactcacaGGCCACTTCAAatggtaaaacaaaaaactatgaCCAACATCTTtacttaacatttattttacaatatttatattcttataaTTTCCATTGCCATGCAACATTTAATGCACCATTGGAAAATTAGCAACTAATATatctaatattaatttaatattaatattattatatctgtttaactgtttaacaAAATGTGACTTTGTGATGTCAAACCAACTGTTAAAtatatgcatacatacatacaaatacatgtaTACAGTACTATAGATGTAAACTTGActaaaagtacaagtgctctatTTAAagagacttgagtaaaagtttaactgttctttaagctccacattTAAGTGGAAGAACTAAAGTacccaacattttttgtttaaaaagctttgttacaatgcagcacataaaaatgtattggaGTAAAAATTTTGAACTCAttcaaaatatacagtaatataaaagtggaagtaggagcAAATAATACTCCTGtatatacagatacagcattttagtacttaacccttgtgtggt

Function

GO:

id name namespace
GO:0036344 platelet morphogenesis biological_process
GO:0030220 platelet formation biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022672661.1 True 1664 mRNA 0.44 6 7747106 7758203

Neighbor

gene id symbol gene type direction distance location
LOC103025534 LOC108433315 coding downstream 97231 7629780 ~ 7649875 (-)
LOC103026256 tdh2,LOC108433314,LOC107582959,LOC107583601,LOC105896089,LOC107721289,LOC107659247,LOC108269662 coding downstream 122646 7609633 ~ 7624460 (-)
srrm1 srrm1,LOC107659230,LOC107583602,LOC107721297 coding downstream 139476 7593639 ~ 7607630 (-)
clic4 clic4,LOC107721318,LOC107659249 coding downstream 157771 7547452 ~ 7589335 (-)
crybg1 NA coding downstream 201789 7434617 ~ 7545317 (-)
kbtbd11 kbtbd11,LOC102794541 coding upstream 53667 7811870 ~ 7820202 (-)
arhgef10 arhgef10,LOC107721185,LOC107716000 coding upstream 67460 7825663 ~ 7925959 (-)
LOC111193126 NA coding upstream 172848 7931051 ~ 7967678 (-)
cln8 cln8 coding upstream 227958 7986161 ~ 7996819 (-)
dlgap2 dlgap2,LOC107583594,LOC107654879,LOC107715999,LOC107721130,LOC107583025 coding upstream 250344 8008547 ~ 8222318 (-)
G78861 NA non-coding downstream 6513 7740016 ~ 7740593 (-)
G78643 NA non-coding downstream 384670 7362219 ~ 7362436 (-)
G78642 NA non-coding downstream 384951 7361774 ~ 7362155 (-)
G78638 NA non-coding downstream 400667 7343165 ~ 7346439 (-)
G78639 NA non-coding downstream 406124 7340679 ~ 7340982 (-)
G78871 NA non-coding upstream 4764 7762967 ~ 7765496 (-)
G78885 NA non-coding upstream 91550 7849753 ~ 7915212 (-)
G78889 NA non-coding upstream 219597 7977800 ~ 7981423 (-)
G78891 NA non-coding upstream 223767 7981970 ~ 8040192 (-)
G78911 NA non-coding upstream 392252 8150455 ~ 8151276 (-)
LOC111193177 kcnh1,LOC108433307,LOC106904951,LOC103476431,LOC102309410,LOC103370850,LOC103137420,LOC101155792 other downstream 526252 7198909 ~ 7220854 (-)
G78297 kdm1a other downstream 2560748 5184792 ~ 5186358 (-)
G78083 NA other downstream 3540722 4045434 ~ 4206384 (-)
G78023 scfd1 other downstream 3906536 3834562 ~ 3840570 (-)
prkd1 prkd1,LOC107590910,LOC107719483,LOC107733145 other downstream 4032749 3645097 ~ 3714357 (-)
LOC111193183 NA other upstream 718194 8476397 ~ 8517648 (-)
spdya spdya other upstream 874443 8632646 ~ 8641832 (-)
LOC111193185 stac,LOC107715935,LOC107670884 other upstream 892425 8650628 ~ 8655017 (-)
LOC103027354 LOC103027354,LOC108438753 other upstream 2276483 10034686 ~ 10071884 (-)
LOC103027264 NA other upstream 2536285 10294488 ~ 10336716 (-)

Expression


Co-expression Network