arhgef10 (arhgef10,LOC107721185,LOC107716000)


Basic Information

Item Value
gene id arhgef10
gene name arhgef10,LOC107721185,LOC107716000
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 7825663 ~ 7925959 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022672663.1
ctgctgaggaAGTGCTCCTCCGACTGGGCTTTCCTCCAGAGCGTTCGTATCCGCTCACTTCTGACTGCTTCACCTTCAACCAACACAAACACGCTCACGCCGCTGTTATCTGATCCGTGCACACTCGAGATCTGAGCGCTTGTGCGTTTGTATTTCAGATCCAGATGAAGTTATTTATGACGATGTGCCGAGAGAGAATTCTGGATCCACTACAGacccCGATGAAATGATCTACGATGACGTGGAGTTGGGGGAGGAGGGTGGCAGCAGTTCTCTGGATAACGGCTGGAGCTCCAGTGAGTTTGAGAGCTATGACGAGGGCagtgatgctgagaacggtcacgCTGAGAACGGCCTCCCCAGCGCCTTTGTCCGCGGACGCCCACCGAACAAGAAAACACAcCTCTCTCAAGATCTGACGCGTTTGAAAGAGCACTATGAGAAAAAGGTGAGAGATCTAATGGCAAACGCAGTGGGGACAGTAGAACTCCAGCAGCTCAGACACAAACATGAGCAGAAGATGCAAAAGCTGGTGAAGGCAGCTAAGCACGGGACCAAGGACGGCCTGGAGAAAACCAAAGCTGCAGTGAAGAAGGGCAAGTCCTTCATTCGGACCAAGTCTTTCTGCCAAGAGAGGAAGATGTCCCATTTTGAGGAAGAAGAGTCTGAGCTCTTTATCGAGGTGGAGTGTTTTAATGTGGAACCAGTGTTAGGCCCCGCCCCCGAGGGCCTCTCTCAGCAACAGGTGGTCAGAAGATGCATTCTGGAATCAATATTAGAAAGTGAGAAGAACTACTTGGAGGCACTGAAGAGAATACTTGAGCAGTATGAAAAGCCTCTGCTGGAGATCGAGCCGCGGATgctgagtgagagaaagtgtaaGATGGTGTTTTATCGCGTGAGGGAGATCCTGCAGTGTCACGCCCTCTTCCAGATCGCTCTGGCCAGCCGAGTGGCAGACTGGGACAATCTGCAGACCATCGGAGACGTGTTTGTAGCCTCGTTCTCCAAGTCCATGGTGCTTGATGCCTacagtgaatatgtgaataacTTCAGCACAGCCATGCAGGTGGTGAAGAAAGCCTGTGCATCTAAACCCTGCTTCCTGGACTTCCTTAAgCAAAGGCAGGAGTGCAGCCGTGACCGGGTCACTCTCTATGGTCTCATGATGAAACCTATTCAGAGATTCCCCCAGTTTATACTACTTctacagGACATGCTGAAGAACACTCCGGTGGGTCATGCTGATCGGCTGCCCCTGCAGATGGCTCTCACTGAGCTGGAGACTCTGGCTGAGAAACtcaatgaaaagagagaagctgATCAGCGCTGTGAGATCAGACACATCGCCAAGGCCATGAATGAGCGCTACCTCAACAAGCTCCTGAGCAGCGGCTCCAGGTATCTGATCCGCTCTGATGATGTGGTCGAGACGGTGTATAACGACCGCGGTGAAATCATCAAGACCAAAGAGCGACGACTGTTCCTACTCAACGACGTGCTCATGTGTGCCACGCCCAACCTGCGATCTCCTCAGGAAGTTGTAGGTGGTGTTATAAGTGGAGGACTTCCTTCAGGCCAGCACTTTCTGTTGAAATGGAGCGTTCCTCTGAGCCTGGTGGAGCTGGTGGAGTTCGGCTCCTCGGAAGAGATCGGAGACTCTGCCCGATTCCCGGCTCCTCACTCTGGAGACAAAGTTGTCATCAACGCCAAGCCAAATAAGTTATATGTGGGTCCAGGCCAGCTTTATCAGGACCTGCAGAACCTGATCCACGATCTCGGCCTCGTCAATCAAATCTCCTCCATGATCGGCAGCCTCAAGGGAAACTACCAGaaTGTAAATGGGACAGTAGCACAAGACTGGGTCTCAGGTCTTCAGCGTCTCATCCTTAAGAAAGAAGAGGAGATCAGGGCTGCAGACCGCTGCCGTATCCAACTACAGTTACCGGGGAAACAGGACAAGTCAGGCAGACCCACATTCTTCACTGCGGTTTTCAACACGTTCAGCCCTTCCATCAAGCAAGCGTGGATCAGTAACCTGCAGATGGCCAAGCTGGCCCTGGAGGAGGATAACCTGCAGGGCTGGTTCTTTGCTGAAGATGATAGTAACCAGATAAAGAAACAGAAGCATCCTCTCCTCCTAAAGCACATGCCTGTGGTCATGTCCAGACTGCAGGAGTTTAAGgTGGAATGTGCAGTTCATAACCCAGAGCCACATATTAACAGTGAAAGCACAGCGGACATGCCTGCCGTGGGTCACGGATGTGTCTGGGTGGCCAGCTGCACCAATCAGATGGGTCAGATTGCCATTGTGGCCATGCAGAACTCCAGTCCGAAGGTGACCGAGTGCTTTAACGTGGAGTCACGAATTCTGTGTATGACCTATGTGCCCATGGATGAGTCCCTGGTGGACGGCGAGGGAAACGCAGATCACGGGGCCCAGTCCAGGGTTGGTGATACACCCACGGTGTGTGTAGGGATGGAGGAAGGGagTATCTCTGTCTATAAGAGCAGTCAGCGCTCGAAGAAAGTCCGTCTGCAGCACTTCTTCTCTCCGGACAAGTCCACAGTCACGTGTTTGGCCTACAAGAGCCCATTTCTGTACGCTGGGCTGGTCAGCGGCTCTCTTGCAGTGTACTCCAGAGCATCAGacGGCCTATGGGATCCATCCAGTGTACAGTTGCTGAAGCTCGGGGTTCTGCCGGTGAAGGCTCTGCTGGCTGTAGGGGAGCATGTGTGGGCATCTTCTGGAGGCCAGGTCTTTATCAtcaacaccaacacacactctgtgGAGCACCAGTTGGAGGCTCATCAGGATGAGGGTATGGTGGTATCTCAGATGGTGGTGGCTGGAGTGGGCATCTGGATCGCCTTCAGCTCTGGCTCTACACTCAGACTCTTCCATACTGAGACACTGGAACACCTACAGGACATCAACATCGCCACACCCGTCAACAACATCTTATCAggTCACCAAAGGGTCTCAGTGAGCAGTCTGCTGGTTTGTCACGGTTTGCTGCTGGTGGGGACGAATCTTGGTGTGACCGTGGCTCTGTCTGTGCCCAGGCTGCAGGGAATCCCGAAGGTCACAGGGCGAGGCATGGTGTCCTTCCACGCTCATTATGGTCCTGTGAAGTTCCTCACTGCAGCCCTGCCTGTGTGTAACCTGCCCCAAACCACCACAGCTCCAACTGCCCTCAGTTCATCCAGCCAGTGTGGTCCTCCAGAAGAGGAAAGGCCAGgctctgctccagcagtgtccAGTGACAGAGGCGTGTGGCTGggcgacagcagcagcagctgcaccCCCGGCCCTTGCTCTGGCTCAGCTCCAGTCCTCCAGGACACGCTCTCCTCCTCCTGCGGCtctctggccacgtcacacagCTCTCTGGAGCACGGCCCGGAGGACGGGAGCATCTACGACCTTCTGAACGACCCTGCACAATCCCAGAAGGCCAAGCGAGCGCAGCGGGTGGACGTGAGCTCGATAATGGTGGTGTCTGGTGGGTTGGGGCACCGTCGGGTCAACAGGAAGACCAAACAGTCCAGACACGAGGAGAGTGTGTCCACCATCATGGTGTGGCAGATTCCTATACTTAACGCATGAGTCTGAAGATGGAGATAAAGGTTGGTGATTTAATGCATTACTTAGGGCATGACTGATGGGCTCTCTGTCCCTTGCAGTGCATTTGGAGGCATTTTCCTGGTCTGTGGTGTAGAAAGGGTTGATGCTGAATGAAAGGGAAACAGTGCTACAAGGTGGGACTGAATACACAGTTTTAATCGATGCTCATTCTCCAGTGCTGCCGGCAGCAGTGACATCAGCAGTATAGCCACTTACGCTCTCGTTGGAAGTTGGACCCCTTCAAGTTACTTGAAATACAAACTGCTTTTGATGGCAATTGGAAGTTGGACAGAGGAAGTGCTGCAGTATGACTCCAGTAattgtgctttttttaagtgtaaaagCAGTCTGAAGTGAAGTagcactgctaatgctaattatcCCTATGCATCTCCAGCTGCTGCATGCATGCCATGCTGTGTGTTTACCTTGAAATCAAATTCAAGGTAACTCCACTGCATTATGAGTTCTGAAAGATGTGTTACTCAGTATATTGTAAGGGATGTTTACAGGACacacttattaaaaataaaggtgctatgAAAGACTATTTAAGGAATGCCATAGCAGAACAATTTGTGGGGAGCTTTGAGTGTAAATTTTATGAAATAGGTAAACCTTTACAAAAGCTCTTTTACATATACGATGCATCTCAGTTGGATATGACACACTAACACAATAAggtatttactgtatactttTTTGGTAGGTATTTGTAGTGCAGGTTTGACAGGTTAATACgcaaaatattaatgtaataaccAGTTTTGTACGAAGAATAGCTTTTTCTATTCCAACATACAGCACTGCAAGTTCTTCAGTGCAACTAAAGTGCAGCTAAACATGCATTATCATCTTATTGTTATTAATACAAAATTATTATGCATCATAATAATTAAGTATACTCAGTTTTGACACTTTATCTATGCTACATACTACAAATTACATACTCAAAAgtttgttaatatttataattagtGTGCAATTTGTGCATTAACTCACCCATTCAACTCTTACAGGTTCTTACAAGTTATTCTATGGCATcgattaaataacttttaatagtACCTTCATTTTTTTGAGTGTAGATCTGTCACGTTCTTCTTGGTAGATTTGTTTGCCCAAAGATTCAGACTTCAAAACTTTAAGACTAGAGCTTCCAAGATCAAGACGTACCAGCTCTAGTTTCACCTTTACATACAAAACCAAAAAGCTGTCTGATATTTTCTGTTAGGAAGGACGTGTCTGGAATATCTGGCTGGCCAGATATAGAATATTCCTTTTGTTCCTGAAAATGAGTGGAGTTATACCAGTCCTATCAGACATTCCTAAATTAATTTAGTCACGTATGGGTATTTAATATGACTGAGAGAGCTTTATAAGGATGCCATTCAGTATATATGTCTCTTCTGTCTTTTAACAAATATTGAAATAGTTTTGTcccactttttgttttcttgtgtttttcttgTATTTGTCTGATAACTAATGTCTCATAATCATGCTTTTCTTACCTGCACCAAAACTGTAACACGTTTGTTTTTagatttgtttcttttatttgcaccattatttgtattattttagcaTCATGCACATACATCTCTTGTCAAATCATGAAACCTGAAGGGATCTAAGGTGATTTCTGTTACCCTGAGGCCTTAAACAAGGATTAAAAAGGTGATATAGGAGGTTGTGTAAAACCAAAAAAGTGGGGAAAtgtgaataatattaaataatttcccTCTGA

Function

symbol description
arhgef10 Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to be involved in actin cytoskeleton organization; mitotic spindle assembly; and positive regulation of stress fiber assembly. Predicted to act upstream of or within myelination in peripheral nervous system and regulation of Rho protein signal transduction. Predicted to be located in cytosol. Predicted to be active in centrosome. Orthologous to human ARHGEF10 (Rho guanine nucleotide exchange factor 10).

NR:

description
PREDICTED: rho guanine nucleotide exchange factor 10 isoform X1

GO:      GO:0005089,GO:0032319

KEGG:

id description
K16727 ARHGEF10; Rho guanine nucleotide exchange factor 10

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022672663.1 True 5378 mRNA 0.48 25 7825663 7925959

Neighbor

gene id symbol gene type direction distance location
kbtbd11 kbtbd11,LOC102794541 coding downstream 5461 7811870 ~ 7820202 (-)
LOC111193181 NA coding downstream 67460 7747106 ~ 7758203 (-)
LOC103025534 LOC108433315 coding downstream 175788 7629780 ~ 7649875 (-)
LOC103026256 tdh2,LOC108433314,LOC107582959,LOC107583601,LOC105896089,LOC107721289,LOC107659247,LOC108269662 coding downstream 201203 7609633 ~ 7624460 (-)
srrm1 srrm1,LOC107659230,LOC107583602,LOC107721297 coding downstream 218033 7593639 ~ 7607630 (-)
LOC111193126 NA coding upstream 5092 7931051 ~ 7967678 (-)
cln8 cln8 coding upstream 60202 7986161 ~ 7996819 (-)
dlgap2 dlgap2,LOC107583594,LOC107654879,LOC107715999,LOC107721130,LOC107583025 coding upstream 82588 8008547 ~ 8222318 (-)
zbtb8a zbtb8a coding upstream 594116 8520075 ~ 8527936 (-)
gale gale,LOC107721820,LOC107583591 coding upstream 603878 8529837 ~ 8549967 (-)
G78859 NA non-coding downstream 58336 7745303 ~ 7767327 (-)
G78871 NA non-coding downstream 60167 7762967 ~ 7765496 (-)
G78861 NA non-coding downstream 85070 7740016 ~ 7740593 (-)
G78643 NA non-coding downstream 463227 7362219 ~ 7362436 (-)
G78642 NA non-coding downstream 463508 7361774 ~ 7362155 (-)
G78889 NA non-coding upstream 51841 7977800 ~ 7981423 (-)
G78891 NA non-coding upstream 56011 7981970 ~ 8040192 (-)
G78911 NA non-coding upstream 224496 8150455 ~ 8151276 (-)
G78940 NA non-coding upstream 366303 8292262 ~ 8294085 (-)
LOC111193182 NA non-coding upstream 453530 8379489 ~ 8415110 (-)
LOC111193177 kcnh1,LOC108433307,LOC106904951,LOC103476431,LOC102309410,LOC103370850,LOC103137420,LOC101155792 other downstream 604809 7198909 ~ 7220854 (-)
G78297 kdm1a other downstream 2639305 5184792 ~ 5186358 (-)
G78083 NA other downstream 3619279 4045434 ~ 4206384 (-)
G78023 scfd1 other downstream 3985093 3834562 ~ 3840570 (-)
prkd1 prkd1,LOC107590910,LOC107719483,LOC107733145 other downstream 4111306 3645097 ~ 3714357 (-)
LOC111193183 NA other upstream 550438 8476397 ~ 8517648 (-)
spdya spdya other upstream 706687 8632646 ~ 8641832 (-)
LOC111193185 stac,LOC107715935,LOC107670884 other upstream 724669 8650628 ~ 8655017 (-)
LOC103027354 LOC103027354,LOC108438753 other upstream 2108727 10034686 ~ 10071884 (-)
LOC103027264 NA other upstream 2368529 10294488 ~ 10336716 (-)

Expression


Co-expression Network