gale (gale,LOC107721820,LOC107583591)


Basic Information

Item Value
gene id gale
gene name gale,LOC107721820,LOC107583591
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 8529837 ~ 8549967 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022672667.1
CCACGTCTCTgtgagaggaggaagagagaatGAATAAAGTGATTCAGGAGCTcagctcttcctctctctctcctcctcctcacagATCAGCCCGGCTTCTCCCTGTCCGGATCCTCCTCTCTGAAGTTCTagGCTGCCAGGATGGTGCAGAAGGTGCTGGTGACGGGTGGAGGGGGCTACATAGGCAGTCACTGTGTGGTGGAGCTGATTGAGGCCGGTTATCAGCCTGTGGTCATCGATAACTTCAGCAATGCTGTCCGAGGAGAAGGAGATGTCCCTGAGAGCCTGAAGAGGATAGAGAAATTTCTGGACACCAAGATTGAGTTCCATGAATTGGACCTGCTGGACAAACCCGGACTCGAGAAGATCTTTAAAAAGCACTCCTTCTATGCAGTGATGCACTTTGCTGGACTGAAAGCGGTTGGGGAATCTGTGGAGCAGCCGCTACGCTACTACAGGGTCAACCTCACCGGCACCATCAACCTGCTGGAGgTGATGCAGGCTCACGGGGTCCATAATCTGGTGTTCAGCAGTTCGGCGACGGTGTACGGGGATCCTCAGAAACTGCCTATCGACGAGCAGCATCCAGCCGGTGGCTGCACAAACCCTTACGGCAAGACCAAATTCTTCATCGAGGAGATGATCCGCGATCAGTGCAGCGCAGAGAAGGATTGGAACGCAGTGTTGCTCAGGTACTTCAACCCGATTGGTGCTCACATCTCAGGACAGATTGGCGAGGACCCACAAGGAATACCAAACAACCTTCTACCATATGTAGCTCAGgttGCTATCGGGAGAAGAAAGCATCTGAATGTGTTCGGAAACGACTACAACACAGTCGATGGAACAGGAGTAAGGGATTATATTCATGTGGTGGATTTGGCAAAGGGGCATATTGCTGCTCTCCGGAAGCTGAATGACAACTGTGGCTGCAAGgtgtATAATCTGGGTACAGGAACTGGTTACTCTGTGCTGCAGATGGTGAAGGCTATGGAAAAGgcttctggaaatgagATTGCGTACAAGATTGCTCCCCGGAGGAACGGAGACATAGCGTCATGCTATGCAGACCCTAGCCTGGCTGAGAAGGAGCTGGGATGGAAGGCTGATTTTGGCCTGGAGAGAATGTGTGAAGACCTGTGGCGCTGGCAGTCCCAAAATCCCACAGGCTTCAGTAATGGGAATGTGGTGTGAAGCTGATGCAGAAGGAAGACTGAAGAGAAGAAGATCCTAGAGCCATGAAGTCCATTACTTTTCTACGACTTGATTTAAACTAGAAGAAATCTATGAAAACAATGACACAATGAATGATTTACATTCCTTACAGTACTGTTTCTACCTGattacttttaaattattattagcaaGCCTTTGTCTCTTTGACCAATCTTAGTATGTGTCTTTATTGAtcctgtattttctttattcaaatCCATTCTTAACTTAACATTTCCAGGGCCAAGTTCATTGCATATCTTTCTGTTTGTACCTTGTCATGTTGTCAATACTGTTGATTAACTTAattctttaaataattataatttaattattttgggaAACAAgggattgttttattttcgtcTGACTATACTTCTTTTATAACTGCATTGAAGCCAAATACAAGAAGACCAAAACAGGTGCTTTTTTGCAACTCATAATAAAAgggatttacaaaaaaata
>XM_022672668.1
CCACGTCTCTgtgagaggaggaagagagaatGAATAAAGTGATTCAGGAGCTcagctcttcctctctctctcctcctcctcacagATCAGCCCGGCTTCTCCCTGTCCGGATCCTCCTCTCTGAAGTTCTagGCTGCCAGGATGGTGCAGAAGGTGCTGGTGACGGGTGGAGGGGGCTACATAGGCAGTCACTGTGTGGTGGAGCTGATTGAGGCCGGTTATCAGCCTGTGGTCATCGATAACTTCAGCAATGCTGTCCGAGAAGGAGATGTCCCTGAGAGCCTGAAGAGGATAGAGAAATTTCTGGACACCAAGATTGAGTTCCATGAATTGGACCTGCTGGACAAACCCGGACTCGAGAAGATCTTTAAAAAGCACTCCTTCTATGCAGTGATGCACTTTGCTGGACTGAAAGCGGTTGGGGAATCTGTGGAGCAGCCGCTACGCTACTACAGGGTCAACCTCACCGGCACCATCAACCTGCTGGAGgTGATGCAGGCTCACGGGGTCCATAATCTGGTGTTCAGCAGTTCGGCGACGGTGTACGGGGATCCTCAGAAACTGCCTATCGACGAGCAGCATCCAGCCGGTGGCTGCACAAACCCTTACGGCAAGACCAAATTCTTCATCGAGGAGATGATCCGCGATCAGTGCAGCGCAGAGAAGGATTGGAACGCAGTGTTGCTCAGGTACTTCAACCCGATTGGTGCTCACATCTCAGGACAGATTGGCGAGGACCCACAAGGAATACCAAACAACCTTCTACCATATGTAGCTCAGgttGCTATCGGGAGAAGAAAGCATCTGAATGTGTTCGGAAACGACTACAACACAGTCGATGGAACAGGAGTAAGGGATTATATTCATGTGGTGGATTTGGCAAAGGGGCATATTGCTGCTCTCCGGAAGCTGAATGACAACTGTGGCTGCAAGgtgtATAATCTGGGTACAGGAACTGGTTACTCTGTGCTGCAGATGGTGAAGGCTATGGAAAAGgcttctggaaatgagATTGCGTACAAGATTGCTCCCCGGAGGAACGGAGACATAGCGTCATGCTATGCAGACCCTAGCCTGGCTGAGAAGGAGCTGGGATGGAAGGCTGATTTTGGCCTGGAGAGAATGTGTGAAGACCTGTGGCGCTGGCAGTCCCAAAATCCCACAGGCTTCAGTAATGGGAATGTGGTGTGAAGCTGATGCAGAAGGAAGACTGAAGAGAAGAAGATCCTAGAGCCATGAAGTCCATTACTTTTCTACGACTTGATTTAAACTAGAAGAAATCTATGAAAACAATGACACAATGAATGATTTACATTCCTTACAGTACTGTTTCTACCTGattacttttaaattattattagcaaGCCTTTGTCTCTTTGACCAATCTTAGTATGTGTCTTTATTGAtcctgtattttctttattcaaatCCATTCTTAACTTAACATTTCCAGGGCCAAGTTCATTGCATATCTTTCTGTTTGTACCTTGTCATGTTGTCAATACTGTTGATTAACTTAattctttaaataattataatttaattattttgggaAACAAgggattgttttattttcgtcTGACTATACTTCTTTTATAACTGCATTGAAGCCAAATACAAGAAGACCAAAACAGGTGCTTTTTTGCAACTCATAATAAAAgggatttacaaaaaaata
>XM_022672669.1
AGATCTCCACGTCTCTgtgagaggaggaagagagaatGAATAAAGTGATTCAGGAGCTcagctcttcctctctctctcctcctcctcacagATCAGCCCGGCTTCTCCCTGTCCGGATCCTCCTCTCTGAAGTTCTagGCTGCCAGGATGGTGCAGAAGGTGCTGGTGACGGGTGGAGGGGGCTACATAGGCAGTCACTGTGTGGTGGAGCTGATTGAGGCCGGTTATCAGCCTGTGGTCATCGATAACTTCAGCAATGCTGTCCGAGGAGAAGGAGATGTCCCTGAGAGCCTGAAGAGGATAGAGAAATTTCTGGACACCAAGATTGAGTTCCATGAATTGGACCTGCTGGACAAACCCGGACTCGAGAAGATCTTTAAAAAGCACTCCTTCTATGCAGTGATGCACTTTGCTGGACTGAAAGCGGTTGGGGAATCTGTGGAGCAGCCGCTACGCTACTACAGGGTCAACCTCACCGGCACCATCAACCTGCTGGAGgTGATGCAGGCTCACGGGGTCCATAATCTGGTGTTCAGCAGTTCGGCGACGGTGTACGGGGATCCTCAGAAACTGCCTATCGACGAGCAGCATCCAGCCGGTGGCTGCACAAACCCTTACGGCAAGACCAAATTCTTCATCGAGGAGATGATCCGCGATCAGTGCAGCGCAGAGAAGGATTGGAACGCAGTGTTGCTCAGGTACTTCAACCCGATTGGTGCTCACATCTCAGGACAGATTGGCGAGGACCCACAAGGAATACCAAACAACCTTCTACCATATGTAGCTCAGgttGCTATCGGGAGAAGAAAGCATCTGAATGTGTTCGGAAACGACTACAACACAGTCGATGGAACAGGAGTAAGGGATTATATTCATGTGGTGGATTTGGCAAAGGGGCATATTGCTGCTCTCCGGAAGCTGAATGACAACTGTGGCTGCAAGaCTTCCAATCTCTTTCTAAAGTCTTCTCTTCcaatcattgtttttattttatatctcaGTCTCCTCTTTCAGTCTTTTTTAGTCCATTCTTTTCGggtctcttcttttcttttctcttccaaACTCTTCATTATTTGTCTTCTAATTTCTCCTCTTTCAGTCTCCTCTATTTCTGTCTAATGACTTTCCATACCt

Function

symbol description
gale Predicted to enable UDP-glucose 4-epimerase activity. Predicted to be involved in galactose catabolic process via UDP-galactose. Predicted to act upstream of or within galactose metabolic process. Predicted to be active in cytosol. Human ortholog(s) of this gene implicated in galactose epimerase deficiency. Orthologous to human GALE (UDP-galactose-4-epimerase).

NR:

description
UDP-glucose 4-epimerase

GO:

id name namespace
GO:0044237 cellular metabolic process biological_process
GO:0006012 galactose metabolic process biological_process
GO:0050662 obsolete coenzyme binding molecular_function
GO:0003978 UDP-glucose 4-epimerase activity molecular_function

KEGG:

id description
K01784 galE, GALE; UDP-glucose 4-epimerase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022672667.1 True 1681 mRNA 0.46 11 8529837 8549961
XM_022672668.1 False 1678 mRNA 0.46 11 8529837 8549961
XM_022672669.1 False 1137 mRNA 0.49 9 8532296 8549967

Neighbor

gene id symbol gene type direction distance location
zbtb8a zbtb8a coding downstream 1901 8520075 ~ 8527936 (-)
dlgap2 dlgap2,LOC107583594,LOC107654879,LOC107715999,LOC107721130,LOC107583025 coding downstream 307519 8008547 ~ 8222318 (-)
cln8 cln8 coding downstream 533018 7986161 ~ 7996819 (-)
LOC111193126 NA coding downstream 562159 7931051 ~ 7967678 (-)
arhgef10 arhgef10,LOC107721185,LOC107716000 coding downstream 603878 7825663 ~ 7925959 (-)
LOC103047525 LOC108433331 coding upstream 25299 8575266 ~ 8580061 (-)
LOC103047224 LOC103047224,LOC108433332,LOC107583588 coding upstream 51115 8601082 ~ 8604516 (-)
wdr43 wdr43 coding upstream 57977 8607944 ~ 8622583 (-)
ush2a ush2a,LOC108444108,LOC108414482 coding upstream 218695 8768662 ~ 9026556 (-)
LOC103043477 esrrg,LOC107582200,LOC107733169 coding upstream 506101 9056068 ~ 9177695 (-)
G78890 NA non-coding downstream 97553 8428518 ~ 8432284 (-)
LOC111193182 NA non-coding downstream 114727 8379489 ~ 8415110 (-)
G78940 NA non-coding downstream 235752 8292262 ~ 8294085 (-)
G78911 NA non-coding downstream 378561 8150455 ~ 8151276 (-)
G78891 NA non-coding downstream 489645 7981970 ~ 8040192 (-)
G78983 NA non-coding upstream 12131 8562098 ~ 8563527 (-)
G78986 NA non-coding upstream 30616 8580583 ~ 8580826 (-)
G79039 NA non-coding upstream 809611 9359578 ~ 9359810 (-)
G79064 NA non-coding upstream 1046045 9596012 ~ 9596425 (-)
G79067 NA non-coding upstream 1063756 9613723 ~ 9613985 (-)
LOC111193183 NA other downstream 12189 8476397 ~ 8517648 (-)
LOC111193177 kcnh1,LOC108433307,LOC106904951,LOC103476431,LOC102309410,LOC103370850,LOC103137420,LOC101155792 other downstream 1308983 7198909 ~ 7220854 (-)
G78297 kdm1a other downstream 3343479 5184792 ~ 5186358 (-)
G78083 NA other downstream 4323453 4045434 ~ 4206384 (-)
G78023 scfd1 other downstream 4689267 3834562 ~ 3840570 (-)
spdya spdya other upstream 82679 8632646 ~ 8641832 (-)
LOC111193185 stac,LOC107715935,LOC107670884 other upstream 100661 8650628 ~ 8655017 (-)
LOC103027354 LOC103027354,LOC108438753 other upstream 1484719 10034686 ~ 10071884 (-)
LOC103027264 NA other upstream 1744521 10294488 ~ 10336716 (-)
G79582 NA other upstream 2378673 10928640 ~ 10929596 (-)

Expression


Co-expression Network