ush2a (ush2a,LOC108444108,LOC108414482)


Basic Information

Item Value
gene id ush2a
gene name ush2a,LOC108444108,LOC108414482
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 8768662 ~ 9026556 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022672674.1
AGCCGCTGGTTGCTGGGCGACGCAGAGCAGCGTTCCCGAGCCACAGAAGAGCCACTTAAGTGGAGCCGGAGTGGAGAACGGCGCGGGGCTGTAGCGGCGCTGTCAGGGATGGCAAAAGGCGGTCTCTGTGCTGTGTTTACTGGCACAACGCTGGATCGGTGAAAGGGTGAAGACACTAccgttttttaagaatttaagtaAAGattttagttgttgttttttttatctttttttttaaagagttcctgTTGAAGTTCTGCCTTTTATCTTATCTGTCTACTGCGTCTGAGGCGAGCAGATGGCACACTACCATAATCTGCTTTCCTCTCATGAGCCATGTGCTTGAGTAGAGACAGCCTGTGTAAGTATTCCAGAGGACCACAGCAGGCCCAAATCCTAGCTATCATGTGAAGGCTTTGACCTCCTCCTGGACATCGTACCATTAAGCTGTGCTGCCTTACCCAAGGCGCTGAACTGCgaaaaaaaggagggaaaaatGTCGCCCCCGGCACGaccatcattatttatttaacgtCGCTCCATCAGGAGGCCTCTTTGCTGCCGAGGATGTATTGGCTCCACAGGCACAGAGGTACTGCGTTATTACTGTACACCCTGGGCCTTTTTGTCCCCTTTGGGACCGTGGCCCCTCAGGGTTCTTTCCCCAGGCTGGAGAATATCGGGGCCTACAAATCAGTCGGTGTAGCACCAGGCGGGGCCACGTGCGGCGTCCCGGAGCGCAGCGCCTTCTGCCAGGCCGGCCGGGCCGAGGAGGATTTCCTAACCTGCTCCCAGCACTTCTGCATCCAGGAGTGCCCGTACCGCTCCTCCACCCCGCGATACGCCGACCTGCTCGCCGCCCATCCTGACGGGTGCCCGGCGGGCGACAGCCAGGATCTCCGGCCAGGGGCAGAGGCTGGATCCAGCAGCTTTGTGTTTCGAAACCAGAGCAGCTGCTTGGCTTCCCCCTCCTCTCCGAACCTGGGCCCGGCCGGCTCATTTACCCTAACGGTTTGGCTGAAACTCGAGGAAGCCTCTGTAATGACTGTGTTTGAGAAGAGTGCCATGGACAAGTTGGTGCTTCTACTGACCATCTCAGAGACTCAGATCCAGTTCCACTACACCACTCAGACTGGACAGATCTTCTCCATATTCATGAGGACTGCAGGGCACATCAGCCTCGGCCAGTGGACACACATGGCACTGCAGGTACACGGCACAACTGTAAGCCTGTTCCTGAATGGACAAGAGGAGGACAGCACAGCCCTGGATACACAGACCCTCGAAGGCTCGATCACCGACATCACTTCAGACAGTGTCTTTTGGATCGGACAGAGCTCCAACGGGTCCAATCAATTCATCGGGAGAATGCAGGATTTCAGATTTTATCCCCAGACTTTAACCAACAGAGAAATAGAGGAGGTCTTCTCTGGGCGACTCCCTCAGCTCCATGTCCAGCCGTCCTGCCGCTGCCCCCCCAGCCACCCCAGAGTGCACCCTCTAGTGGAGAGGTACTGCATCCCCAACTCGGCCGACGACACCACCAACAACCGTGTACTCCGCCTCAACGTGGACGCTCACCCGCTGCACTACATCAACGACAATGACATCGGCACCAGCTGGTTCTCGTCCGTCCTCTCGACTGCGGAGAAACTGGACCAGGGAGTTACCATCACCATAGACCTGGAGAATGGCCAGTACCAGGTTTTCTACGTGATTCTCCAGTTCCAGAGTGCACAGCCCGAAAGCGTGCGGATTCAAAGGAGAACCGGCGGCGGCTCCGGCTGGAGAGACTGGCAGTACCTGGCCAAGAACTGTAGCTTCTTTGGAATGGAGGATAACGGGCCTTTGGAGAAGCCCGACTCTGTCAACTGCCTCCAGTTTCCCAGtgatgTCCCGTACTCTCGCGGTAACATCACCTTCAGCATGCTGACCCCCGAGCCTAACCTGCGGCCCGGCTACAACAACTTCTACAGCAGCACCACCCTGCAGGAGTTTGTGAGAGCCACGCATGTGCGCATCCATCTTCAGGGCCAGTACCACACGCGGGGCGCCCACGTACCCTACCGCCATCGCTATTACGCCGTGGACGAGATCACCATCAGCGGCAGGTGCGAGTGCCACGGCCATGCGGACAGCTGCGACACCGCCACTAACCCATACCGCTGCCTCTGCCTTCCTGAGAGTCACACACACGGAACTAACTGTGAGCGTTGTGACCCCCTCTTCAATGACAAGCCCTTCCGATCAGGCGATCAGGTGCAGGCATACAACTGCCGTCCCTGCCAGTGCTATGGCCATGCCTTTTCCTGCCACTACAACGCCAGTATGGACCCCTATCCTTCCGAGCATTTCCGTGGTGGAGGAGGAGTTTGTGACAACTGCACTCATAATACTTCAGGAAGGAACTGTGAGCGATGCAGGAATCTGTTCTACAGAGAAGTCGGCACGTCACTGTGGGCGGAGGACATGTGTAAACCGTGTGAATGTAACAGTGCTGGGACCGTCAATGGCAGCCTGGACTGTGACCAGATGGGGGGGCAGTGTAAGTGCAAGCGACGGGTGTCGGGCCGGCAGTGCAATCAGTGCCAGCACGGATTCTACCAGCTGCAGTCAGCGCTGCCCGACGGCTGCCGAGCCTGTAACTGCAATGCCGCCGGGACGGCACCACCAGATATTACCTGTCACCAGGACTCAGGTCAATGCCAGTGCAAGGCCAACGTAATCGGTCTTTCTTGTGATCGCTGCAACTACGGCTTCAAGTTCCTCAACAGCACGAACACGGACGGCTGTGAGCCATGCGGCTGCAACCCAGACGGCTCTCTGCACCAGTTCTGTAACCCCTTCAGCGGTCAGTGTGAGTGCCGGGTCGGTGTCCGCGGCCTCAAGTGTGACACCTGCGCCCCCGACACCTACGGCCTGAAGGGGGGTAGACCCTGTCTGCCCTGCGACTGCAGTCCTTTAGGGTCTGTTCCGGGTTTGCCTTGCGACCCTCTGACAGGCCAGTGTGTGTGCAGGCCGCACGTGGAGGGACGACGCTGTGGCGTGTGCCAGGATGGTTACCACAGCCTGGGGGCAGGAGGGTCCCTGGGCTGCCTGCCGTGCCAGTGTGAGCGCAGGGGCACGCTGGAGGAGTTGTCCGCATGTGATAAGGTGACGGGGCAGTGCCGGTGTAAGAGCGGCACTGAGGGTCCGCGCTGTAACCGCTGCTCCCCTCACATGTACTGGATTGGCTCTAGTAATTCTACACACGGGTGCCAGCCATGCCTTTGTGATCTTCTGGGCTCTGTGGCTGGAACGGCGTGCGACCCTGACAGCGGGCAGTGCATGTGCCTGCCTACCCGGCACGGTCGAGAGTGTGGCAGCTGTAAGCCAGGTTATTTCCATTCGGAGGAAGGCCGCAGTGAATGCGAGGCCTGTGACTGTCACCCTGTGGGAGCGGTGGGGCAAGTGTGTGCCACGGCCACAGGGCAGTGTGTGTGCTCCCACTCGTCATTGGCTGGCCGCAGGTGTGATCGATGCCAGGACCTCTACTACGGTTTCAACCCTGATACTGGCAGGTGTGAGCAGTGCGGCTGTGATCCGGTGGGCGGGTTCAATGGCTCCTGCTTGGCAGAGACGGGACAGTGCTTGTGTAAGCTGTTCGTGACGGGCGACAAGTGCGACTCCTGTGTGGAAGGATCCAGCCACATGGACCCCACCAACCACCTGGGCTGCAGCAAAGAGCCCAGACAGCAGCCTCCTCCAGTGGGCACTGTGCTCAGCGCCAGTGCCATCGAGCTGAGCTGGAACGCCCCCGACTCGCCCAACAGCAACGCCCTCACCTACACCCTGCTCCGCAATTCACAGATCATCCACAGCAGCTTCAGCTTGCATCCTTTCGAACCTGTGCTGTTCACAGACTCAGGTCTTTCTCCATACACCCTCTACACGTACCAGCTCCTCACCAGCAATGTCCACGgcaacaccagcagctccagcatcAGCCTGCGGACCCTGGCCTCCATCCCCGAACCCAACGAGCTCCAGCTCAGCCTGGTTGGTCGTGCCGGACCCACCAGCGCTTCCTTCAACTGGAGCGAGCCGCTGAACACCTCCGGGCCGGTGGAGCTGTATACCCTGAGCTCTGTGGAAGAGCAGAGTGGAGAGGAGCTCCTTCACTACCAGGGTACGCTTACAGAGGTCACAGTGGATGGGCTACAACCCTTCACCCGCTACGTCTTCAGCCTGCAGGCCTGCACCAACGGCGGCTGTGCTCGCAGCGATAACCTCACCCTGCTCACGGCGCAGATCTCACCCCAGCGGCAGCCGCCTCCACGCGTGGCCATGCTCAGCTCCACCGAGCTGCAGGTGGACTGGGACCCACCAGACCTTCCGAATGGTATCATCATCAGGTACGAGCTCTTCATGCAGGTTCTGAACGAGTCTATGGAAAACGGGACCAGTGTTGGTGCAGAGCACAGGGTGTTCCTCAGCAGCGGGTGGTGGAACCCACAGCGGGCACTGGTCTCGGCCAATGAAAACGCCCTGACTCCGCCTGAGAGCAGTGTGGTGGTGTCTGATCTGGAGCCCTTCACTGTGTACCGCTTCAGAGTGCTCACGGTTAACATGGCCGGCAGCACCAGTTCAGAGTGGACAGTGGGTCGTACTGGAGAGGGAGTGCCCGAGTACATGAGCTCTCCTCGAGTGTCTCCAGTGTCCTCGTCCTCACTCCTAGTGAGCTGGGAGACACCGCGAGAGCAGGACGTCCGAGGCAGAGTGACCGAGTACAGGGTCAGCCTTCACAGAGAGCAAACCTCCAACCCGTACACCCCTCCTGTAGTCACACAGCTGCTGTACACAGCCTCAGCAGAGGAGCGGAGCTACACTGTGGTGGGACTGAAGCCCTACGAAGCATACAGCTTCACggtcactgtgtgtaatactCAGGGTTGTGTGAGCAGCCAGCCGGCTTCCGCACGCACCAGGCCTTCTGCTCCTGCAGGTCTGAAGGCACCCAGGCTGAACCCGCTGAACACGACCGGAATGGAGATTTCCTGGGCCGCCCCGGCTGAGCTGAACGGCCCTACGCCCGTGTACCAGGTGGAGAGGACGGACGTGTCCTTGTCTGATGCTCAGGGCCAGGTGGTCAGAGGCAGACGCTTCACCGGGATCGGATACTTCCACTTTCCCAGTTCTACACTGCCCACCAACACTGACTTCACAGGTCTTCAGCTGAGCTTCCGTACACGAGCAGAGGACGGGCTGATCCTGTGTGCTCTTTCTCCCGGTGAACAGGAAGAATATGTGGCGCTGCAGATTCGTGGGGGCCGACCCTACTTCCTCTTTGACCCTCAGGCCTCGGCTGTGGCCCTCAGTCCACAAAACGATGGAGGGAGGAGGTATAACGACAACCAGTGGCACCGCCTGATCGCTACCAGGAAGCAGGCCGTGGGAACAATCATTGTGGACGATCAATACACTGGCTCAGCATCAGCCACCAGTGGGAGCACTATTATCGGGCAGAACACGGGTGTTTATTTTGGGGGCCTTCCAGAGAACTTCACCATTCACCGTCAAGACACTGgTCCAGCCAGACTGGTGCAGGAGGGGTTCGCAGGCTGTGTGAGGGAAGTTCTGGTGCAGAGGGCCACTAGCCCTGTGGATGTATGGGAGCCGTTAGACTGGGACTCGGCTCTGGAGGAACATGGGACATATGGGGACTGGGAAGGCTGCCCTGAGGACTCTGAGCATGGGGCCTACTTCCTGGGACATGGATTCCTCAAAATGAAACCAGATGTCTTTACTGGTGGagatcattttgaaatatcgTTTGATTTCAAAACAGATCAGCTCAATGCACTACTTCTGTTTGCCTACAACAGTAATGGGGAGGATTACATTTTGgcggAGCTGCAGGGTGGTATCCTCTCCTGGGTGCTGCGGTGGGGAGAGCAGAGTGCAGAGCTGGCTGTGTGGGTGGGCCTGTCCTACTGTGACGGTGGCTGGAACAGCGCCACCATGCTGAAGCGAGGCTCTGTTGCTGGAGCCGGTCTAAACGAGGCTCTGGAGCAGCAAAGGAGCCGGAGGGGAGGCCCACTCACCATCAGCTCGCCACTTTACCTGGGCGGAGTCCCCGCTGATCTACAGCACCCGGCCCTACACCGACACAGCCTGAGGCATGGTTTTGGTGGCTGCATCAGGGGTGTTCGATTGGCGGCGCGTGGACCTGTCGTAAACTTGGCCGCAGCGTCCCGTGGCGCTGTCAGAGTCAATCTGGATGGATGCCTGTCAGCTGACACCAGCGTTAACTGCCGGGGAAACGACTCCATCCTGGTGTATTCAGGGCGGGAGAGGAGCGCTGTGGACCTGACTCTGCAGCCCTTCACtgAGTATTTATACCGAGTGATGGCTTCAGGAGAAGGAGGGTGGACAGCAGGACCGTGGCAGCGAGGACGAAGTCGAGAGACAGTTCCACAAAGTGTGCTGCCTCCCTCCAGAGTTGCCAGTGTAAATGGCTCCAGCGTGGAGGTGAGCTGGGCGGAGCCGCCGGGGGTCAGAGGTGTAATTGAGCGGTACGTGGTGAAGGCGTACAGCCGGGACCGTCCCTCGTCCCCCCCGATCAGCGCCACCTTCCCCAACACGCAGCGGCTGGCGGgAACGTTAAGTGGCCTGGCTCCTTTTAGCAGCTACAGTATTACCCTAACGGCGTGCACTCAGGCCGGCTGCGGGGAGAGCGAGCGCTCGGTCGGCCTCACCACTCCGCAAGAAGctcCTGGGGATGTTCTTCCTCCTCGTGCAGTTTCATACCCCAACTCTCTGTCAGTTTACTGGGATCCTCCTCACAAACCCAACGGCATCATCACCCACTACACCCTCTACCACCACAGCAAGCTGATCTACCAGGGCAACGACACCGCCTTCAACATTACTGatcTGGATGTGTACACTCCACACAAGCTGCTGCTGAGCTCCTGCACGGAGGCTGGCTGCACCAACAGCTCCACAGTCACACTCTTCACTGGCCAGCTCCCCCCGTCCTACATGGAGGCCCCCATCCTAACCGTCCTGGACGCTCGCAGCATCTACCTCCAGTGGGCCGCTCCGCTGGAGGTGAACGGGCTGCTGGAGTTTTACACGCTGTACCAGGCGGTTCCAGAAGAAGAGCCGGTGGTGGTCTACAACAGCTCCGAGCTCTTTCAGGATCACACAGTGCGAGACCTCGTCCCCGGGGCCACCTACCTCTTCCACATCGCTGCGTGCACGGCGGGCGGCTGCACCCTCAGTGCCCACAGCGTGGCACACACAGAGGAGAGCTCTCCGGAGGAGGTGCCCGCTCCGGACGTCCTGCACGTCTCCCCACACGCTCTTAACCTGTCCTGGGGTCCGCCGCGCCAACCCAACGGCATAATCAGCAGCTACGGCCTCTGGATGAACGGCGCGTTGGTCCAGAACTCCTCTTCCACCAGCTTTGGGGTTAGCGGCCTGTCTCCCTGGAGTCTACACAGCTTCCGTGTGCAGGCGTGCACGGCTCAGGGCTGTGCTCTCGGGCCTTTGaCGGAGGTCCGCACATTAGAGATGCCTCCAGTTGGCAGCGTGcccctggaggtgctgaacgaGACCCCTCGGTCAGTGAGAATGAAGTGGGATTCCCCCGCCAAACCCAACGGCAACCTTACTTACTCTGCCCTTTTCACCGGAGCCTTCTACCAGCCGTCAGgtcAGAATGGAAGTGGTGTGGAAGTGACGGAAGAGATGGAAACTAGAACACAGTTCACTACGGGTAAAGCGGGTCACTGGGTTTCTATTGGAGGCCTGCTGCCCTACTCCAACTACAGCGTCAGGGTCAGAGCCTGCAATGGCCAGGGCTGTGTGGAGAGCGCCCCCACCAGTATTACACTCCCTCCTGCAGctccaGATGGCCTCTTGGCCCCGAGGCTGGCAGCTGCCACCCCCACCTCACTGCAGGTGGCCTGGCTCAGTCCTGCACGGCCCAACGCTCCCGGACCCCTGCACTACCGGCTCCAGATGAAGACCCCGACCACCCAGGAAATCCTGCAGCTGGTGGATAATGAGACGACAGTGTTCAGTCAGTGGATTGAGGGGTTGGAGCCGTTCACAGAGTACCAGTTCAGACTGCTGGTTTCCAACAGCCATGGAGAGTCCAGCAGCTCCTGGCTCTCTCTATATACTGACCAAGATCGCCCTGGATCTGTTGACCCACCTGTACTGTTTGAGATCCACTCCAGGAATGCAACCATCGCCTGGTCTCCTCCTTCACACCCAAATGGTATAATCACCCACTATAACATCTACCAGAATGGGCAACTGAGCACCACTGTGCCAGGAAACAGCACCATGCTCACCCTCTTGGGTCTGGATCCCTACTGGCATTATTCCATCCAGGTGGAGGCCTGCACAGAGGCGGGCTGCACCCTATCCTCCGACTCCCACACCATCCACACACCTCCAGCCCCTCCAGAGGGCGTGGCACCCCCTCGACTCTACTCGGACACGCCCACCTCTGTGCTGTTGACCTGGGATCCACCGCTGCGGGCCAACGGGGTGCTGGAGAAGTACACAGTAGAAAGACGAGCCGCCGGCACCGAGCAGATCTCTACTGTGGCCACAGTGCTGCCCAACCACACGCTCACATACCTGGACAGCTCAACCGCTCTCAGCCCCTGGGGCAGCTACGAGTACCGGGTGGTGGCCAGCACTGAGCAGGGGGGCTCTAACAGCAGCCAGTGGCAGAGAGTGACCACCCGACCTTCAAGACCTGCTGGACTGCAGCCCCCTGACGTGCTGGTGTTGGGGCCAGAGTCGGTGCAGGTAACATGGTCTGCACCTCTAATAGCTAATGGAGAGATTGAGCGCTACGAGATCCGCATGCCGGACCCCCGCATTCCTCACACGGACCCCTTCGACCTCAACCGCACCGTCACCAACCTGGTGCCATACACCAACTACAGCGTTACCATCCTGTCCTGCTCGGGCGGCGGAGGCTACGTAGGAGGCTGCACAGAAAGCTTACCCACATCTGTCACTACATTACCCACAATTCCACAGGGGGTGTGTTCACTCTCAGTGGTGGCCATCAGTGAGTCTTTCCTGGCTGTGTCGTGGCAGCCGCCGTCCAGGCCAAACGGGCCCAACATACGGTAATACAGCTGACAGAGGAGAGATTTGATGATATATGTTTGTTGATAAAATAATGTTGAAAAAATCTgtcatacatacaaaaatatgtgtaaattggCATTTTTCTGCCCACAAagtaatttaagtattttaatttttaatttaacgtTACAGATTGGTAAGTGGTAATTGTGTTTTACCCTGCTGCCATAAAATTGCagttcttttcattattttcttttttttttgttataaacagttatttagtgtaaaaaatatatattttttgaaatttTAATGGGATTTTCCAGAATTTATGGTTATTGTTTAACACAGTTT

Function

symbol description
ush2a Acts upstream of or within eye photoreceptor cell development; response to auditory stimulus; and sensory perception of light stimulus. Predicted to be located in extracellular region and membrane. Predicted to be integral component of membrane. Predicted to be active in basement membrane. Is expressed in eye and photoreceptor cell. Used to study Usher syndrome type 2 and Usher syndrome type 2A. Human ortholog(s) of this gene implicated in Usher syndrome (multiple); nonsyndromic deafness; and retinitis pigmentosa (multiple). Orthologous to human USH2A (usherin).

NR:

description
PREDICTED: LOW QUALITY PROTEIN: usherin

GO: NA

KEGG:

id description
K19636 USH2A; usherin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022672674.1 True 9459 mRNA 0.58 42 8768662 9026556

Neighbor

gene id symbol gene type direction distance location
wdr43 wdr43 coding downstream 146079 8607944 ~ 8622583 (-)
LOC103047224 LOC103047224,LOC108433332,LOC107583588 coding downstream 164146 8601082 ~ 8604516 (-)
LOC103047525 LOC108433331 coding downstream 188601 8575266 ~ 8580061 (-)
gale gale,LOC107721820,LOC107583591 coding downstream 218695 8529837 ~ 8549967 (-)
zbtb8a zbtb8a coding downstream 240726 8520075 ~ 8527936 (-)
LOC103043477 esrrg,LOC107582200,LOC107733169 coding upstream 29512 9056068 ~ 9177695 (-)
LOC111193187 NA coding upstream 811422 9837978 ~ 9838726 (-)
LOC103045212 LOC108441044,LOC108269989,LOC107594821,LOC107719497,LOC107590922,LOC107733139 coding upstream 920956 9947512 ~ 10023607 (-)
LOC111193127 NA coding upstream 1013785 10040341 ~ 10041065 (-)
id3 id3 coding upstream 1057652 10084208 ~ 10087040 (-)
G78986 NA non-coding downstream 187836 8580583 ~ 8580826 (-)
G78983 NA non-coding downstream 205135 8562098 ~ 8563527 (-)
G78978 NA non-coding downstream 231038 8535936 ~ 8537624 (-)
G78890 NA non-coding downstream 336378 8428518 ~ 8432284 (-)
LOC111193182 NA non-coding downstream 353552 8379489 ~ 8415110 (-)
G79039 NA non-coding upstream 333022 9359578 ~ 9359810 (-)
G79064 NA non-coding upstream 569456 9596012 ~ 9596425 (-)
G79067 NA non-coding upstream 587167 9613723 ~ 9613985 (-)
G79080 NA non-coding upstream 620127 9646683 ~ 9647063 (-)
LOC111193186 ttc27,LOC107689788,LOC107670805 non-coding upstream 686484 9713040 ~ 9716352 (-)
LOC111193185 stac,LOC107715935,LOC107670884 other downstream 113645 8650628 ~ 8655017 (-)
spdya spdya other downstream 126830 8632646 ~ 8641832 (-)
LOC111193183 NA other downstream 251014 8476397 ~ 8517648 (-)
LOC111193177 kcnh1,LOC108433307,LOC106904951,LOC103476431,LOC102309410,LOC103370850,LOC103137420,LOC101155792 other downstream 1547808 7198909 ~ 7220854 (-)
G78297 kdm1a other downstream 3582304 5184792 ~ 5186358 (-)
LOC103027354 LOC103027354,LOC108438753 other upstream 1008130 10034686 ~ 10071884 (-)
LOC103027264 NA other upstream 1267932 10294488 ~ 10336716 (-)
G79582 NA other upstream 1902084 10928640 ~ 10929596 (-)
ltbp1 ltbp1 other upstream 1915131 10941687 ~ 11183941 (-)
G79865 NA other upstream 2942885 11969441 ~ 11971939 (-)

Expression


Co-expression Network