ythdf2 (ythdf2,LOC107721611,LOC107654833,LOC107697702)


Basic Information

Item Value
gene id ythdf2
gene name ythdf2,LOC107721611,LOC107654833,LOC107697702
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 10205135 ~ 10222403 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022672687.1
CGCCATTGTGTAGCTGAACCTAAAAGCTGTAATAGAGAAACAGAGCGTTAGCTTCATTACTCCTGCGGAGAGAGCAGACTTTAACCAGGAAAATAGCGCTAAATTAAACCGCAGGGGGGAGAAATGTCAGCCAGCAGCCTCGCTGAACAGAGACCGAAAGGCCAAGGGAACAAAGTGCAAAACGGAGCTGTTACCCAAAAGGAGACTCTAAATGATGATGAGTTTGAACCTTATCTGAACGCTCAGCCCAGACAGAGCAATGCCTATACGGCCATGTCCGACTCCTATATGCCCAGCTACTACAGCCCCTCCATAGGATTCACCTACTCGCTGAATGAAGCGGCATGGTCTACGGGTGGTGACCCCCCAATGCCTTACCTGGCCTCTTACGGACAGCTTAGCAATGGGGAGCACCATTTCCTCCCTGATGCCATGTTTGGCCAGTCGGGGGCTTTGGGGAGCAACCCTTTCCTGGGACAGCACGGTTTCAACTTCTTCCCCAGTGGGATTGACTTCTCGGCTTGGGGAAGCAGCAGCTCTCAGGGACAGTCCACTCAGAGTTACGCCTATGCCCCAAGCTCACTAGGCGGTGCTGTGATTGACGGACAGTCTCCCTTTGCAGCCAATGAGCCACTCAACAAGGCGGTGGGGATGAATAGTTTGGACCAGGGCATGGCGGGGCTTAAGATAGGGGCAGCAGGAGGGGACATGGCTCCTAAAGTTGTTGGCTCTGGACTTCCTGGTGGCCCTCTTAGTCAGGTTTCGACAGCTCCAAGCATGCCTGCGGCTTCCATTGCCCCTGCCAAAGCTGCTTCCTGGGCAGATATCGCTAGCAAACCGGCCAAACCACAGCCCAAACTTAAGACCAAGGGTGGTCTGGGTGGGACGAACCTTCCACCTCCGccaattaaacacaacatggaTATTGGGACTTGGGATAATAAAGGGGCAGTGCCCAAAGCTGCAGCTCCTCAGCAAACCACCATGCCCACCAATGGACAGCCACCCAATCAAGTCTCTCCACAGCCTGGCACCACTGCCGGAGGTGTGCCGCAGCTTCCCATCAGCAATGGACAGTTGGTACCCCCTACTGGTCAGATTGTTCAGCACCCTCAACCTCCAAATGGCCAGCAAAGCATGGCCCAGCATCCTCAGCTTTCTCAAGGCCctcctcctgccccgccccagCCATCTCAACCAACCCGCTGGGTACCGCCCCGTAACCGTACCAACGGATTTGGTGATGCGGTGGGTGGTGCCGGGACTGGCCAATCGCCTCCCAGTGCCGGGCTGGGTGGTGTTCCTGTTCAGTCAGAGCCACACCCGGTTCTGGAGAAGCTTCGTCTGGTCAACAATTACAACCCGAAAGACTTTGATTGGAACCCCAAGCAGGGTCGTGTGTTCATCATCAAGAGTTACTCTGAGGACGACATCCACCGCTCCATAAAGTACAACATCTGGTGCAGCACGGAGCACGGGAACAAGCGCTTGGATGCAGCGTACCGCTCCCTTGGTGGGAAAGGTCCGCTCTACTTGCTCTTTAGTGTCAATGGAAGTGGCCATTTTTGTGGCGTGGCGGAGATGCGATCGCCCGTGGACTACAACACCTGTGCTGGCGTGTGGTCGCAGGACAAGTGGAAAGGGCGCTTCGACGTACGCTGGATCTTTGTCAAAGACGTTCCCAACAGCCAGCTAAGGCACATTCGACTGGAGAACAACGAGAACAAGCCCGTAACCAACTCGCGTGACACGCAGGAGGTTCCCCTCGAAAAAGCACGTCAGGTGCTCAAGATCATCGCCAGCTACAAGCACACCACCTCCATCTTTGACGACTTCTCACACTACGAGAAGCgccaggaggaggaggagagtgtGAAAAAGgtggAGGTGCAGGGGAGCGATCCGTACTCGAGTAACCCCAGCCGGAGTCACTACCGACTGCAGGATCGCCAAGGACGTGTCAAGTAAAAAGCCACTGGTTTGGGCAAAAGACTGACATAGTCCTGCTCTCCTTACACCCTGATCTTTTCACTGAATACACCGGGGAAAAGACTTAACCGAGgattcaaaatatgaaaaaaaaaaaaaaacaacgaatgagaaaaagaaactAAATGAAGACTCTTCTCTTGATTTCTGTTGACTTAAAAGACTTACTTTGAACTTgtagtaaaaagaaaaagaaacgaTTATTCATAGGACTACGACTTAATAATTCTATAGGATTCTTAGGTGACCATTTTCCCTCCTTTTTTCATCCCATCCCTCTTTTGCTGCCTCTTACTTTTTCCtgacttttgtttttcttcccaatttttATCTTCTGTTTTTACTGTCCAAAAGCAAGGCCTGACCTCTTTCTCAGTCAAATCTagagtggattttttttttccttttttaaatagtgCCCCATTTGAGTGGCAGTCTATTTAATTTGTCTTTAAGCCCTTCCCCAGTTTTTATTGGAGTTGAAATGATCCAATCGGGATGTCCGGTGGGAGTTGCCTTCTTTGTGGATGTCGCTTTGTGTAGCCTGTGCGACgtaaaaaaggaaggaaaaaaggaaaacaaaataaagatgtATGTTCTGATCTTATCGCTCCCttaagaatgaaagaaaaaaggtaaaaatgaaTGTTCATGAatgtttttgttggtttgtttttgtttttcccaCCTTCTCATTTTTCATTGGTCAGAGATTGCAAAAGGACGGGGTCAACCGAGCCATAATTGAGTTTAGCCGTTTATCATTTTGTTTTACACTGCGCAGAAACGCGGAGGCCATGTTTATGGTCGTCGTTGGActtttgttttcctttatttcaactttaaaaacaacagaactAGTTGCTATGGGCTTTTCTTCATGTCCTCCTGTTTGTTTTCCACTTCTGTTTCTTAAGTCGGCATCATTGGTGGGCTGTGGACCCCCTCTTTCTATTACTCAGTTCATCAAAATAAATGTGGTATACTCAGCAGAACATGTGTGTTGCAtttccccctcccctccccgCTCCCCATTGTTTGACTAAAATGCTCTTCTCCATGCACACTAACCCTTGTCCTGAAACTCCTGGAATCCTTGCTCCCCTCACTCTGCCGCCTGCACACTCCACCCACCCTTCCTACCAACCCACCTACCCGTCCCTTCCTGTAGTATGTTAATGTTGGTGCATTTAAAGGGGTCCTGCAAAAACGTATGGCATTGATCAGTGGCGGAATAAAAAGCTGCTAAAAAGA

Function

symbol description
ythdf2 Enables N6-methyladenosine-containing RNA binding activity. Involved in several processes, including endothelial to hematopoietic transition; mRNA destabilization; and regulation of hematopoietic stem cell differentiation. Acts upstream of or within hematopoietic stem cell proliferation; mRNA catabolic process; and negative regulation of Notch signaling pathway. Predicted to be located in P-body and cytoplasmic stress granule. Predicted to be active in cytoplasm. Orthologous to human YTHDF2 (YTH N6-methyladenosine RNA binding protein 2).

NR:

description
PREDICTED: YTH domain-containing family protein 2

GO: NA

KEGG:

id description
K20102 YTHDF; YTH domain-containing family protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022672687.1 True 3243 mRNA 0.49 6 10205135 10222403

Neighbor

gene id symbol gene type direction distance location
msra msra,si:ch1073-358c10.1 coding downstream 33365 10133982 ~ 10171770 (-)
id3 id3 coding downstream 118095 10084208 ~ 10087040 (-)
LOC111193127 NA coding downstream 164070 10040341 ~ 10041065 (-)
LOC103045212 LOC108441044,LOC108269989,LOC107594821,LOC107719497,LOC107590922,LOC107733139 coding downstream 181528 9947512 ~ 10023607 (-)
LOC111193187 NA coding downstream 366409 9837978 ~ 9838726 (-)
LOC103026970 NA coding upstream 205982 10428385 ~ 10475469 (-)
LOC103026375 ankrd1,LOC107583650 coding upstream 255259 10477662 ~ 10488854 (-)
LOC103025430 NA coding upstream 415445 10637848 ~ 10640240 (-)
fgfbp3 NA coding upstream 458753 10681156 ~ 10684935 (-)
LOC103026670 LOC103026670,LOC108430189 coding upstream 492964 10715367 ~ 10717840 (-)
LOC111193189 NA non-coding downstream 63780 10137983 ~ 10141355 (-)
G79290 NA non-coding downstream 90973 10108804 ~ 10114162 (-)
G79288 NA non-coding downstream 99454 10105423 ~ 10105681 (-)
G79285 NA non-coding downstream 103389 10101536 ~ 10101746 (-)
G79269 NA non-coding downstream 204317 9998895 ~ 10000818 (-)
G79347 NA non-coding upstream 37199 10259602 ~ 10259882 (-)
G79357 NA non-coding upstream 78666 10301069 ~ 10301293 (-)
G79515 NA non-coding upstream 283944 10506347 ~ 10557458 (-)
G79514 NA non-coding upstream 294523 10516926 ~ 10556868 (-)
G79533 NA non-coding upstream 412097 10634500 ~ 10635093 (-)
LOC103027354 LOC103027354,LOC108438753 other downstream 133251 10034686 ~ 10071884 (-)
LOC111193185 stac,LOC107715935,LOC107670884 other downstream 1550118 8650628 ~ 8655017 (-)
spdya spdya other downstream 1563303 8632646 ~ 8641832 (-)
LOC111193183 NA other downstream 1687487 8476397 ~ 8517648 (-)
LOC111193177 kcnh1,LOC108433307,LOC106904951,LOC103476431,LOC102309410,LOC103370850,LOC103137420,LOC101155792 other downstream 2984281 7198909 ~ 7220854 (-)
LOC103027264 NA other upstream 72085 10294488 ~ 10336716 (-)
G79582 NA other upstream 706237 10928640 ~ 10929596 (-)
ltbp1 ltbp1 other upstream 719284 10941687 ~ 11183941 (-)
G79865 NA other upstream 1747038 11969441 ~ 11971939 (-)
G79945 NA other upstream 1935183 12157586 ~ 12192028 (-)

Expression


Co-expression Network