LOC111193171 (coch)


Basic Information

Item Value
gene id LOC111193171
gene name coch
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 3870561 ~ 3872428 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002650302.1
accATTGGTTcaaaatcaaccaatcaaaatcATCTTAGTTGCTGGGCAGATATTctacagctcagccaatcacaataGCCTATTTGTCTTCGACTGTTTTATAGTAATACCCGCTGAAACACGAAAAAGTACCTTAGCTACGGAATCCAGGCAGAATGTGGACACCTACTGGCCACTGTGAAAGATGCACTCCACCGAGACAGAGCTTGGGACTGGATGCCATGTGCGTAAGAGCTGAGGTAGTTGGACCTGCCCGCGACTCTCTGGATCTCCAGCGGACCTCCAGACACGTCGATGATCCCTCTGCAGAGTGGAGAGATGGCAgAAACAGAGGCGTAGACCCCTGAGCCGAACACAGAGAGCTTCCACAGGGTGCAGTTCGCCGGACACAGCACCACCTGGGTGGAGTCGG

Function

symbol description
coch Predicted to act upstream of or within defense response to bacterium and positive regulation of innate immune response. Predicted to be active in collagen-containing extracellular matrix. Human ortholog(s) of this gene implicated in autosomal dominant nonsyndromic deafness 9 and autosomal recessive nonsyndromic deafness 110. Orthologous to human COCH (cochlin).

NR:

description
cochlin

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002650302.1 True 412 lncRNA 0.52 3 3870561 3872428

Neighbor

gene id symbol gene type direction distance location
ankrd9 NA coding downstream 566994 3302159 ~ 3303567 (-)
LOC103025229 acta1,act2,LOC105024319,LOC108430668,LOC102689871 coding downstream 965913 2900144 ~ 2904648 (-)
LOC103024903 LOC108430667 coding downstream 974880 2881109 ~ 2895681 (-)
LOC103025537 LOC108430628,LOC108269477,LOC107745352,LOC107711907 coding downstream 994925 2869496 ~ 2875636 (-)
LOC111193124 LOC108270491,LOC108234815 coding downstream 1118305 2673416 ~ 2752256 (-)
strn3 strn3,LOC106611207,LOC107590905 coding upstream 8891 3881319 ~ 3909337 (-)
hectd1 hectd1,LOC107582380,LOC107733112,LOC107697712,LOC107719534,LOC107694830,LOC100380626 coding upstream 45228 3917656 ~ 3952193 (-)
heatr5a heatr5a,LOC108412624,LOC107697711,LOC107733168 coding upstream 83898 3956326 ~ 3991775 (-)
mis18bp1 NA coding upstream 122132 3994560 ~ 4006610 (-)
mdga2 mdga2,mamdc1 coding upstream 174635 4047063 ~ 4277821 (-)
G78022 g2e3 non-coding downstream 44946 3823445 ~ 3825615 (-)
G78019 NA non-coding downstream 55828 3813935 ~ 3814733 (-)
LOC111193170 NA non-coding downstream 231646 3633094 ~ 3638915 (-)
LOC111193169 NA non-coding downstream 250313 3572023 ~ 3620248 (-)
G77941 NA non-coding downstream 355281 3514696 ~ 3515280 (-)
G78039 coch,LOC107697714,LOC107719487,LOC107590906,LOC107733111,LOC107694797 non-coding upstream 4327 3876755 ~ 3879254 (-)
G78044 NA non-coding upstream 50887 3923315 ~ 3993581 (-)
G78054 NA non-coding upstream 140324 4012752 ~ 4013009 (-)
G78087 NA non-coding upstream 242344 4114772 ~ 4115105 (-)
G78131 NA non-coding upstream 435089 4307517 ~ 4309637 (-)
G78023 scfd1 other downstream 29991 3834562 ~ 3840570 (-)
prkd1 prkd1,LOC107590910,LOC107719483,LOC107733145 other downstream 156204 3645097 ~ 3714357 (-)
G77892 NA other downstream 521572 3297582 ~ 3348989 (-)
bmf bmf other downstream 663875 3175798 ~ 3206686 (-)
LOC103029757 LOC108430670,LOC108269994 other downstream 825798 2964024 ~ 3044763 (-)
G78083 NA other upstream 173006 4045434 ~ 4206384 (-)
G78297 kdm1a other upstream 1312364 5184792 ~ 5186358 (-)
LOC111193177 kcnh1,LOC108433307,LOC106904951,LOC103476431,LOC102309410,LOC103370850,LOC103137420,LOC101155792 other upstream 3326481 7198909 ~ 7220854 (-)
LOC111193183 NA other upstream 4603969 8476397 ~ 8517648 (-)
spdya spdya other upstream 4760218 8632646 ~ 8641832 (-)

Expression


Co-expression Network