LOC111193187


Basic Information

Item Value
gene id LOC111193187
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 9837978 ~ 9838726 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002650312.1
CCGCTAatatttcccacaatccaccTGGAGCCGCGCTGAGCTGAGGAACCCGGCAGTGAGTGGCGGAGCggcagaggagaggagagaggagagagggacagagagagagaagttgaGattcaaCTATCCTTCCTACTGGAGAGAATGAAgatgaagagagggagaaaaatgaacaataacgaataaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002650312.1 True 187 ncRNA 0.50 2 9837978 9838726

Neighbor

gene id symbol gene type direction distance location
LOC103043477 esrrg,LOC107582200,LOC107733169 coding downstream 660283 9056068 ~ 9177695 (-)
ush2a ush2a,LOC108444108,LOC108414482 coding downstream 811422 8768662 ~ 9026556 (-)
wdr43 wdr43 coding downstream 1215395 8607944 ~ 8622583 (-)
LOC103047224 LOC103047224,LOC108433332,LOC107583588 coding downstream 1233462 8601082 ~ 8604516 (-)
LOC103047525 LOC108433331 coding downstream 1257917 8575266 ~ 8580061 (-)
LOC103045212 LOC108441044,LOC108269989,LOC107594821,LOC107719497,LOC107590922,LOC107733139 coding upstream 108786 9947512 ~ 10023607 (-)
LOC111193127 NA coding upstream 201615 10040341 ~ 10041065 (-)
id3 id3 coding upstream 245482 10084208 ~ 10087040 (-)
msra msra,si:ch1073-358c10.1 coding upstream 295256 10133982 ~ 10171770 (-)
ythdf2 ythdf2,LOC107721611,LOC107654833,LOC107697702 coding upstream 366409 10205135 ~ 10222403 (-)
G79222 greb1,LOC107594824 non-coding downstream 30047 9801528 ~ 9807931 (-)
LOC111193186 ttc27,LOC107689788,LOC107670805 non-coding downstream 121626 9713040 ~ 9716352 (-)
G79080 NA non-coding downstream 190915 9646683 ~ 9647063 (-)
G79067 NA non-coding downstream 223993 9613723 ~ 9613985 (-)
G79064 NA non-coding downstream 241553 9596012 ~ 9596425 (-)
LOC111193188 NA non-coding upstream 39593 9878319 ~ 9930504 (-)
G79251 NA non-coding upstream 60818 9899544 ~ 9900956 (-)
G79266 NA non-coding upstream 99465 9938191 ~ 9940933 (-)
G79268 NA non-coding upstream 159222 9997948 ~ 9998575 (-)
G79269 NA non-coding upstream 160169 9998895 ~ 10000818 (-)
LOC111193185 stac,LOC107715935,LOC107670884 other downstream 1182961 8650628 ~ 8655017 (-)
spdya spdya other downstream 1196146 8632646 ~ 8641832 (-)
LOC111193183 NA other downstream 1320330 8476397 ~ 8517648 (-)
LOC111193177 kcnh1,LOC108433307,LOC106904951,LOC103476431,LOC102309410,LOC103370850,LOC103137420,LOC101155792 other downstream 2617124 7198909 ~ 7220854 (-)
G78297 kdm1a other downstream 4651620 5184792 ~ 5186358 (-)
LOC103027354 LOC103027354,LOC108438753 other upstream 195960 10034686 ~ 10071884 (-)
LOC103027264 NA other upstream 455762 10294488 ~ 10336716 (-)
G79582 NA other upstream 1089914 10928640 ~ 10929596 (-)
ltbp1 ltbp1 other upstream 1102961 10941687 ~ 11183941 (-)
G79865 NA other upstream 2130715 11969441 ~ 11971939 (-)

Expression


Co-expression Network