XLOC_007293


Basic Information

Item Value
gene id XLOC_007293
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007125.7
NCBI id CM002898.2
chromosome length 52660232
location 24230911 ~ 24234703 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00016205
tctggagacacaaaagactaacCTTAAATCTtcaaaaaggggtaaaataggttaACAAATTCAAGtatgttaaacaaaaaaataggtTGCCCTAAATaacaagaattatgttgtttaagctcattttaaataagtagttttgtcattttttaattttaacctAAAGATACAAAACCACAAGAAACAACCTGTTATTGACATGTGATAGTATTTTTATCAATTGATCAATTGTGAAgagtttataaaatgtaaaaaggagTCAAAGAAGTGCCAGGAATTCCTCCATCACACAGACAAATGAAGATCTGCTAGAAAGGCGACACTTTTCTGGCATCTGTACGGAACTATAATGGGCAACACTGTGACTATGTGAAAACCCAAACATGCTTGAGCATTCTGTCCAGTTCATAGTCACATCTTGAGACATAATGTcctatttttggtttgtttagatgTTTTCGGTACGTGTTATGTTCATATTTCAGTTGAGCCACACCATAATTTGTTTGGCAGCAGACGCAGACCCATCTTTCAGAGGTCTTGCTCCGTCTGAGGTCTTGAACCGCACTGACAGTGAAGTTGCAACAGAGtttaatttaattgcatttttttattattctataatGTGAACACCTTTACACAACGAATTTGCATGTATTTGGCTTGTGTGTTCAAGTGGGACGTGAAGACTGCAAGTCCAGCATCAAGATTGCAGATCAGGATATATATGTTATAAGAACAACTTCTGTTTGGATGAACAACCCAACTGAATTTAAAGATAAGtgattttttatatgtatgtaaatatttgtTTGCAGTATcctgtttttaatgttgtttttaatattatgaaaatcATTTTATCTCATCAACATCATTGTCGACTAGTTAGTGTGTGACAGGGTGATATCAGGCAAGTTGAGCCACTTTTGTTTTAATCGTTtgaaacaccaaaaaaaaaaaaaaaacagtgtatgACATTTAACCATGTGCTTATCATTAATAAgtactgtttttaatatttttgtgttgaactgtaataaaatatatttgtttaatccCTACAGGTTTTAAAACATTAGCTGGCCCACATTTTTTATATGGCATTGTTCAGGTAAAATGAGCTGGCTGATCAGCAAATGGCCCAGTCAGACTGCTAATGAATTAGACACATTCTGATAAAACTTATggaattatgattatttttatattatatttcagaACACAGCATTTAAATTACagttaaattacattacaaagttcattttaaatgaacaaaaccaaac

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00016205 True 1286 lncRNA 0.32 2 24230911 24234703

Neighbor

gene id symbol gene type direction distance location
XLOC_007292 stc2a coding upstream 8946 24215046 ~ 24221965 (+)
XLOC_007291 AL935195.1 coding upstream 120431 24075254 ~ 24110480 (+)
XLOC_007290 drd1a coding upstream 187060 24042760 ~ 24043851 (+)
XLOC_007289 si:ch211-277c7.6 coding upstream 196213 24033718 ~ 24034698 (+)
XLOC_007288 kif3a coding upstream 231345 23970818 ~ 23999566 (+)
XLOC_007294 nkx2.5 coding downstream 6538 24241241 ~ 24244034 (+)
XLOC_007295 chrm1a coding downstream 23859 24258562 ~ 24262815 (+)
XLOC_007296 hnrnpa0a coding downstream 42853 24277556 ~ 24283719 (+)
XLOC_007297 klhl3 coding downstream 49212 24283915 ~ 24305086 (+)
XLOC_007298 BX005228.1 coding downstream 122697 24357400 ~ 24357517 (+)
XLOC_007279 NA non-coding upstream 1271691 22841157 ~ 22959220 (+)
XLOC_007278 BX005043.2 non-coding upstream 1418914 22807498 ~ 22811997 (+)
XLOC_007268 NA non-coding upstream 2090698 22129096 ~ 22140213 (+)
XLOC_007259 NA non-coding upstream 2453075 21777557 ~ 21777836 (+)
XLOC_007255 ndufs8b non-coding upstream 2551994 21671107 ~ 21678917 (+)
XLOC_007300 NA non-coding downstream 642399 24877102 ~ 24878581 (+)
XLOC_007302 AL645792.1 non-coding downstream 809107 25043810 ~ 25046769 (+)
XLOC_007303 NA non-coding downstream 818006 25052709 ~ 25055796 (+)
XLOC_007304 NA non-coding downstream 821754 25056457 ~ 25058284 (+)

Expression


Co-expression Network