XLOC_007299 (arhgef37)


Basic Information

Item Value
gene id XLOC_007299
gene name arhgef37
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007125.7
NCBI id CM002898.2
chromosome length 52660232
location 24840669 ~ 24873654 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00014406
CGCGATGTCTCTGTAATACAGATCAACGCTCGAGCAAACCTAAAGTACAGCACGCGTATATTTCTTGACAACGGTTTGTCCTCTTATTTTTTCAATCCCTCGTGTGATTAATCGATACTGCTGTCAAATTCGTCTTTAAAAATCATAGCAACGACCTTCAAATGCCACCCTGCTGCATACATCTGTAATAATAGGCGAGTGACAAAAACAATCATATCACGCATTTCATGACTAAGCTGATCTCGAGCGGCATGATCGGAATGCGTGACGCGGGGCCTGGAATTGAGCCTGTTTCTGGCCGCGAGGACCATAAGGACAGGTGCTACTGAAGCCATTAAACTCGACGCCAAGTTAGTCTCGCTTTTCTAGCTCTGGTGACCAGCTTAACAGAGCGTTAAAATGCCCGTACTTAAGACGTTTTACCGTGCGATGTCCGAGGAATCTCCGCTATAAACACCCACAGATCGTCTCATGGCAAATTCCCTGAAGGCAAATATAACACTGACTTTAGATGAGGAGAAGGAAGGAGCTAAAGAGATGGAAAATGCGTTAGAAGAGCTTGCAGAGGAAGAAGAGGATAAAGAGGAGAGGAAGGCACGGGTTGCAGCAGAAGAGGCAGCAGCCAGAGAGAGAGCCGCTCAGAGGCAGCTCATGGCAATAGAGGAGATGGTGCACACAGAGAAAAACTACCTGAAACATCTGCAGATCTGCACGGTCACCATAAACAGCAACCTGCAGAAACTACAGCCTCCTCCACCAAACTTAGAGAACATGTTCCAGCACATAGATGAAGTTATGGAAGTTTCCAGTAGACTCCTGAGTCTTCTAGATCAGGCACAAATGCAGCACAGTGACCCAAAATATCTGGAAACATTGTGTGACTCTTTCTTGAGTCTGTCTCAAGATATTGAAATGGCTTATAAGGAGTATCTTGCCAACTACAACAATATCACCGCTCTGGAAAACAGCTACAAACAGAAAGAGGCCCTGTGGATGGAGATGGTCAGAATCATCAAATCCTCTGCTCCTGATGTGAACGCGTCTACTTTGAGCTTCTTCCTGGTAATGCCGGTCCAGAGAATCGCCCGTTACCCCCTACTTTTCCAGACCATTCAGAAACACACAGACCCCCAACACCCTGCCTACCCTGAACTGGAGCACACCGCTCACACGGCCATCCAGATCAACTGCAGGATCAATGAATACAAACGCTTCCGTGAAGTGGCTGACAAGTACAAGAAGACAGAAAACCTGACCATCAAGGACAAGCTTAATCGGTTGAGTGGCCACAGCATTGCTAAGAAGACAGCCCGGTTCAGCCAGTATATAAAGCATGAGACCGGAATAGTGCCAAAGTTAAAGGATGAAGAATTCGATGCCCTAGCTGGCTTCTTCTTTGTCCTGGAAAGGGGCGTCTCAGAGCTTCATGATAACCTGCTGACTTATCTCCACCATTTACAGAGGTTCCTCAGCTGCAGACCAGAGGAAGCAGATCTTGATCTTGAAGGGGAGAAAACCGCCTTGTTCTCCAAAGAAATCACAGTGGCGCTCAGACAGTGGATATACCCCTCATATGAGAAGCGTTTGAAGACTCTGGTCTTTAAGCCGCTGAGCTCACTTCGGGAACTGATGGCAGGACCGCGTAACCTGATTCGCAAACGTCAAGATAAGCTACTGGACTATGAGCCAATCGAGGAGAAGAGTAACCTGACTTTTGAGGAGCAAGCCATAGCTAACACGTATAAGACCATGAACACTCTGCTGCTGAACGAATTGCCGCAGTTCAATGGAAAAGCCCTGCAGCTCATGTGGGCCGCTTTAGAGGCCTTCAGCGTCCTTCAAAGAGACCTAGCAACTGATATGGAGCAACTGGCCACCAGCTTCACCCATCAGCTCCCACACAGTTATTTGGAGGCTGGTGACTTCTGGAAGTGGGCAGAGACCTCTGTGCTGGAGGGTTCGTGGAGGATGGAGAGCCTGTGTCGGAGTGTTCAAGATGAGCTCAATGCTCCCATTGTGCAGGCACTCAATACTGTCAGCAAGAAACGTCTCATGTATCTGAATGCAAACCATGGCTCAGAGAAGATCTACCAGCTGACAGGCCCTGTGGTGGGCACTCGTGACCTGGACCTGACCCTCAACAAGGGAGAGCTGGTAGCTGTCGTCTGTGAGATGGACACGCGAGGAGACCGCCGCCGCTGGCTGGTTGATGCAGGAGGCCCAAGGGGATACGTGCCTGCCTCAAAACTGGCACGTTACCACCAGCTGACAATTGACCCACCACAGTCTCCTCATCTGAACGTTACACCTACTGGTCCAGGACCCAGAAGACACTCCTACACACCTGGAGCCCAGCCACACCTGACCACTATCACCACACCATGTTTTCAGGTGTACGCTGGCTATGACTTCACAGCAAGGAGCGCTCATGAGCTTTCTCTTAGAGCAGGTGAGCCGGTGCGAGTGGTGGAGCCTCACGATAAACGTGGGAACAAAGAATGGAGTCTGGTGGAGGCACGTGGCCAGAGAGGCTACGTCCCCTCCAACTACCTCACCCTCCTACCTTCTGTAATCGCCTCACCCACCTTCCCTTACCGCTAGACATGGGGAATAGCCATCATCTGCTGCTGATATGAGTGCTAttccaaacacacacagaccATGAGAAGCACTTTCCCTGAAGAGCTGTTGATGCGCGAGGGGGCGGATGGCTGCTGTTTGATGCGTCATTTGACTGGTGTATGTATTGGAGTGGTGCTTGGAGCCCTGCTGTGGAGTGGTCATCCATATACTTGATCTTTGCTTCACCCTGAGGCTGTTGCTGGTGGAGATTGTTTTATCCAATTGGAGAAGAGCTGCAGGGGCGGGCAGACACACTGTTATGGCACATGGGTGGTGGTGGAGTGTGCTGTTTCCTGCAATTAACACACCTCCACTGTCTATTGGATCAACGCTTTGAGCAGCCCTGGCACCGCTTGTCTGGTACTGCTCGGAGAAATGGAGAATATTTGCAGCTTACTTTTGAGAATGGATTTTGTTTTGTGAGTCAGAGCTCTTTTGCACTGATTTCCAACCCACTTGAGATGACTAATGCGCAAATTTGCATACATGATTTTTTAAAGCGTTATAATGCTTGATGAActgtttttagatatttaaatgtgGATGTAAAAACGTATTTGGACACTTAGGACACACAAATTTAATGCATGTCATTGATCCATACAtcaagtatatatatatgcataacaACATGGCACACACACCCttcttaagcatttttttaatattattaaacaatatatatatatacatatatattagggctgctcgattttgg
>TCONS_00014407
CACCCGTCCCACATGAGGCCCTGCAGTGTGACTCAGTGGACAAACTTACACCAGTCTGAGAGTGTGTGTCAGGCTTTCCACAGCCATCTCTCTTCCTTTTTTTTCAGCGCAAGAACACCAGGGTTAGCCCTTCCCGTTCTGTAAAGATCGTCTCATGGCAAATTCCCTGAAGGCAAATATAACACTGACTTTAGATGAGGAGAAGGAAGGAGCTAAAGAGATGGAAAATGCGTTAGAAGAGCTTGCAGAGGAAGAAGAGGATAAAGAGGAGAGGAAGGCACGGGTTGCAGCAGAAGAGGCAGCAGCCAGAGAGAGAGCCGCTCAGAGGCAGCTCATGGCAATAGAGGAGATGGTGCACACAGAGAAAAACTACCTGAAACATCTGCAGATCTGCACGGTCACCATAAACAGCAACCTGCAGAAACTACAGCCTCCTCCACCAAACTTAGAGAACATGTTCCAGCACATAGATGAAGTTATGGAAGTTTCCAGTAGACTCCTGAGTCTTCTAGATCAGGCACAAATGCAGCACAGTGACCCAAAATATCTGGAAACATTGTGTGACTCTTTCTTGAGTCTGTCTCAAGATATTGAAATGGCTTATAAGGAGTATCTTGCCAACTACAACAATATCACCGCTCTGGAAAACAGCTACAAACAGAAAGAGGCCCTGTGGATGGAGATGGTCAGAATCATCAAATCCTCTGCTCCTGATGTGAACGCGTCTACTTTGAGCTTCTTCCTGGTAATGCCGGTCCAGAGAATCGCCCGTTACCCCCTACTTTTCCAGACCATTCAGAAACACACAGACCCCCAACACCCTGCCTACCCTGAACTGGAGCACACCGCTCACACGGCCATCCAGATCAACTGCAGGATCAATGAATACAAACGCTTCCGTGAAGTGGCTGACAAGTACAAGAAGACAGAAAACCTGACCATCAAGGACAAGCTTAATCGGTTGAGTGGCCACAGCATTGCTAAGAAGACAGCCCGGTTCAGCCAGTATATAAAGCATGAGACCGGAATAGTGCCAAAGTTAAAGGATGAAGAATTCGATGCCCTAGCTGGCTTCTTCTTTGTCCTGGAAAGGGGCGTCTCAGAGCTTCATGATAACCTGCTGACTTATCTCCACCATTTACAGAGGTTCCTCAGCTGCAGACCAGAGGAAGCAGATCTTGATCTTGAAGGGGAGAAAACCGCCTTGTTCTCCAAAGAAATCACAGTGGCGCTCAGACAGTGGATATACCCCTCATATGAGAAGCGTTTGAAGACTCTGGTCTTTAAGCCGCTGAGCTCACTTCGGGAACTGATGGCAGGACCGCGTAACCTGATTCGCAAACGTCAAGATAAGCTACTGGACTATGAGCCAATCGAGGAGAAGAGTAACCTGACTTTTGAGGAGCAAGCCATAGCTAACACGTATAAGACCATGAACACTCTGCTGCTGAACGAATTGCCGCAGTTCAATGGAAAAGCCCTGCAGCTCATGTGGGCCGCTTTAGAGGCCTTCAGCGTCCTTCAAAGAGACCTAGCAACTGATATGGAGCAACTGGCCACCAGCTTCACCCATCAGCTCCCACACAGTTATTTGGAGGCTGGTGACTTCTGGAAGTGGGCAGAGACCTCTGTGCTGGAGGGTTCGTGGAGGATGGAGAGCCTGTGTCGGAGTGTTCAAGATGAGCTCAATGCTCCCATTGTGCAGGCACTCAATACTGTCAGCAAGAAACGTCTCATGTATCTGAATGCAAACCATGGCTCAGAGAAGATCTACCAGCTGACAGGCCCTGTGGTGGGCACTCGTGACCTGGACCTGACCCTCAACAAGGGAGAGCTGGTAGCTGTCGTCTGTGAGATGGACACGCGAGGAGACCGCCGCCGCTGGCTGGTTGATGCAGGAGGCCCAAGGGGATACGTGCCTGCCTCAAAACTGGCACGTTACCACCAGCTGACAATTGACCCACCACAGTCTCCTCATCTGAACGTTACACCTACTGGTCCAGGACCCAGAAGACACTCCTACACACCTGGAGCCCAGCCACACCTGACCACTATCACCACACCATGTTTTCAGGTGTACGCTGGCTATGACTTCACAGCAAGGAGCGCTCATGAGCTTTCTCTTAGAGCAGGTGAGCCGGTGCGAGTGGTGGAGCCTCACGATAAACGTGGGAACAAAGAATGGAGTCTGGTGGAGGCACGTGGCCAGAGAGGCTACGTCCCCTCCAACTACCTCACCCTCCTACCTTCTGTAATCGCCTCACCCACCTTCCCTTACCGCTAG

Function

symbol description
arhgef37 Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to be located in cytoplasm. Is expressed in blastoderm and shield. Orthologous to human ARHGEF37 (Rho guanine nucleotide exchange factor 37).

GO:

id name namespace
GO:0005737 cytoplasm cellular_component
GO:0005085 guanyl-nucleotide exchange factor activity molecular_function

KEGG:

id description
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-100514-3 Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to be located in cytoplasm. Is expressed in blastoderm and shield. Orthologous to human ARHGEF37 (Rho guanine nucleotide exchange factor 37).

Ensembl:

ensembl_id ENSDARG00000002463

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00014406 False 3340 mRNA 0.48 13 24840669 24873654
TCONS_00014407 True 2284 mRNA 0.51 13 24845941 24872915

Neighbor

gene id symbol gene type direction distance location
XLOC_007298 BX005228.1 coding upstream 483152 24357400 ~ 24357517 (+)
XLOC_007297 klhl3 coding upstream 535583 24283915 ~ 24305086 (+)
XLOC_007296 hnrnpa0a coding upstream 556950 24277556 ~ 24283719 (+)
XLOC_007295 chrm1a coding upstream 577854 24258562 ~ 24262815 (+)
XLOC_007294 nkx2.5 coding upstream 596635 24241241 ~ 24244034 (+)
XLOC_007300 NA coding downstream 3448 24877102 ~ 24878581 (+)
XLOC_007301 ppargc1b coding downstream 61082 24934736 ~ 25001584 (+)
XLOC_007302 AL645792.1 coding downstream 170156 25043810 ~ 25046769 (+)
XLOC_007303 NA coding downstream 179055 25052709 ~ 25055796 (+)
XLOC_007304 NA coding downstream 182803 25056457 ~ 25058284 (+)
XLOC_007293 NA non-coding upstream 605966 24230911 ~ 24234703 (+)
XLOC_007279 NA non-coding upstream 1881449 22841157 ~ 22959220 (+)
XLOC_007278 BX005043.2 non-coding upstream 2028672 22807498 ~ 22811997 (+)
XLOC_007268 NA non-coding upstream 2700456 22129096 ~ 22140213 (+)
XLOC_007305 NA non-coding downstream 222234 25095888 ~ 25106060 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000000_17034650_17052531 ARHGEF37 coding CI01000000 null 17034639 ~ 17052531 (-)