CI01000009_02786421_02791586


Basic Information

Item Value
gene id CI01000009_02786421_02791586
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 2786311 ~ 2792435 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000009_02786421_02791586.mRNA
ACGCTTCGCATCTAGCACCTTACTAACCTTACATCACCTTACTAACATATTAAGAAACTGTCAGTTTGACAGACAAACTCTGAGACGCCTGGTCGTCATTTTGGCTCAAACCATCATGCTGGGTTATGCAGGAATTCCGGAATACAAAAGTCCTGCCGGAGCCATTATGGCGTGAGGCAATCCAGTTTCATAACCTCGAGTGGGAGGAGTTTGGGTTTTCTGGAAGCTGGGAGCAGCAGAGCTGGAGTTATGAGGGGGAACTAGAGCAACGGCAGCCAGCGTGAGCGAGCTAGGGAAAAGCCTCGCGCGTTTCACAGAAGCCCTGCGCGTGGGTAGAATGAGTAGAATCAGCTGAACTGCGTACTTTAATAACAACCTACATTTGTATCCCAGAAACGGTGTGCACTTCTTTTTTTGGTCTCGACAGAGTCTAATTAGTTAGTTTAGCGTTTAGAGGACTTAACCCACTTGGTTCCGTGACTTCAACAACGATTATTGTGGAGTTGTTTTTAACATTTGAATTACCTCAGCCTCGAGTGGCGGGATTAAGGGGGCCGGGAGAGAGGGAGGAGAAGGTGGGGCAGAGTGAGTCAATCGGACCGAGCGCTCACTACTGTCTGCCCGCTTCAACCGAACCACCAACGGATATTTTTTTTTTCTCTAAAACCGACAGGAATCAATCATTTTTTTTGTTTATCGGAATTTGGAGAGCGACAACGTCGGCTGGCAACGTTTCTTTTCGCCGCTCATTCCAGGTACTCTGAAGTATCTACGCTGTAATCCTCTGATATTTACCGTTTGGAAGGATTTTTTTGGAGGGGAGTGTAAATTCCCCGGTCTTGTTGGACCATGGCCGACGACGACGTGCTCTTTGAAGATGTTTACGAGCTGTGCGAGGTCATTGGCAAAGAGCTGTATATAACTCTGACATGGCCTCCTGCAGGTGCTGCCTATTACTCATTCTCACAAAATACAGTGTTGACCCATGTGGAAAAACACATTCATCAGCCAAGTCACAGTCAGGGTTTATGTGGATGGTCAAAGCATGAAAACTCTTCTTAGAAAATTTCTTAGAGTTCCCAAATTGTAACAGTTTTAACACATTGGCTACGTTTACGTGTATGTTCAACAATAGGCTGAATATTGTCAATAATCAAAATAAGCTGATTAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000009_02786421_02791586.mRNA True 1172 mRNA 0.45 3 2786311 2792435

Neighbor

gene id symbol gene type direction distance location
CI01000009_02682050_02707583 NA coding downstream 78688 2681608 ~ 2707623 (-)
CI01000009_02654102_02655554 CASK coding downstream 129873 2654102 ~ 2656438 (-)
CI01000009_02610459_02610721 NA coding downstream 175590 2610260 ~ 2610721 (-)
CI01000009_02591882_02593586 RPL8.S, RPL8 coding downstream 192550 2591863 ~ 2593761 (-)
CI01000009_02403219_02417215 FAM160A2 coding downstream 369096 2403156 ~ 2417215 (-)
CI01000009_02844171_02861309 MAOB coding upstream 50576 2843011 ~ 2861309 (-)
CI01000009_02885473_02893975 NA coding upstream 93033 2883688 ~ 2893975 (-)
CI01000009_02904768_02914992 EFHC2 coding upstream 112256 2904691 ~ 2915247 (-)
CI01000009_02916137_02917550 FUNDC1 coding upstream 123206 2915641 ~ 2917550 (-)
CI01000009_02975388_02982670 NA coding upstream 182953 2975388 ~ 2985391 (-)
G52406 NA non-coding downstream 207333 2574486 ~ 2578978 (-)
G52409 NA non-coding downstream 219747 2563762 ~ 2566564 (-)
G52440 NA non-coding downstream 272640 2512957 ~ 2513671 (-)
G52379 NA non-coding downstream 334671 2448366 ~ 2451640 (-)
G52378 NA non-coding downstream 358463 2427249 ~ 2427848 (-)
G52469 NA non-coding upstream 18610 2811045 ~ 2811334 (-)
G52478 NA non-coding upstream 30527 2822962 ~ 2823928 (-)
G52488 NA non-coding upstream 119870 2912305 ~ 2912542 (-)
G52489 NA non-coding upstream 120683 2913118 ~ 2913345 (-)
G52410 NA other downstream 223778 2551724 ~ 2562533 (-)
G52098 NA other downstream 1378684 1401932 ~ 1407627 (-)
CI01000009_03261739_03262843 NA other upstream 468768 3261038 ~ 3262843 (-)
G52828 NA other upstream 1424985 4217420 ~ 4231469 (-)
G53515 NA other upstream 2709960 5502395 ~ 5505248 (-)
G55814 NA other upstream 5633386 8425821 ~ 8428012 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
tiger barb (Puntius tetrazona) G70767 NA non-coding NC_056707.1 CM032076.1 16452306 ~ 16452818 (+)