CI01000009_09878612_09881564 (POPDC2)


Basic Information

Item Value
gene id CI01000009_09878612_09881564
gene name POPDC2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 9878612 ~ 9881894 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000009_09878612_09881564.mRNA
ATGAATAGTGGCGACTCTATCTTCATTGACAGCATAATTTTCAATCACACACTCTGCAATGGCTGGACCAACAGCACTGAAGGTGCCATCTACCATCTGGGTAACACTATTCTTTTTTTGGGCTATATGGGTGGTAGTGGAGCATATGGGGCTCTGTACATCTTCAGTTTTTTGGCTCCCGCTTTCCTCTGTCTGGCTCTGTGGGGCTGGCTGACGGTGTGCGGCCTTGATGTCTTCCTCTGGAACCTGCTGCTGATGCTGCAGTGTTTGGCCCAGGTGTGTCATCTGATTTTTCGGCTGATGCAGGACGGTTTAGCCAACGAGGAGCTTTCTGCGTTCTACACGGCGGTCTATCTGCCGCTGGATGTACCTGTGCAGGTGTTCAAGGACATCACGGCTGCTAGCGAGAACAAAGTGCTCTCTCTAGCGGCGGAGGAGACATATGCTGTGGAGGGGAAGACGCCCATTGATCAGCTGTCTTTTCTCATTTCTGGCAGGATTAGAGTGTCCTTAGAAGGTCAATTTCTCCATTATATCTTCCCTCACCAATTTCTTGACTCTCCAGAATGGGAGTCTCTAAGACCAACAGAGGAGGGCAACTTCCAGGTGACATTAACCGCAGAGACGGACTGCCGTTACATCTCTTGGCGCAGACGTCGGCTTTACCTTCTGCTGTCCAAGGATCGTTACATTGCCCGACTTTTCTCTGTCATGCTCGGAAGTGACATTGCTGACAAACTGTACTCTCTCAATGACAAGCTGTTTGCCAAGAGCGGTGTGCGCCTTGATATTCGTCTGCCCAGTCTCTACCACGTCCTCGCCCCCTCGCCACAGGGCAGTGAGGGTGGCAGCACTAGCTCACCACCCAGGGGAAGCCAAGGAGATCCTACAGTTGTAAAGGTTGATCCAGCACCGTCTAACCAGCGCTCTGATGAAAGAACCTTCCATCCGGACCAGGGAAAGACCCCTGTGCCCAAACCTCCACACCAGGTCTGGCCCTCAGACACAGAGATGCCCTCTGGTGAGGACTCAACCAGCTTGGTTCTGGAGGACTTTGCTGATATGACAGGCTCTCTAATGGACTACGGGAGTGAGAGGGAATATTTGAAGTAAAGATTAGGGTGTTGAAGCTTAACACACTGGGACACTTCTTAAATCACAATGTAAGTACACAAGTGAGGATTGGCGGGTGGGTCTGTATAGACGGGGCTGGTTTGCATGAAAAAGGCACCACTGCACTAACTGGACATTTGAACTGCACAAATACTGACTGATTAAGAGAATGCAGAGTGATGAATGTGCATGATGAATTGTTATATTTTATGCTTTTTTTTTTTACCTTTTGATTTATGGCTTTAGTGTCATCTGATTCAAATGGAAGAAAGGGAGGCCAATAGTGATTATTATATTGAAAATGAATATTCTACAAGAATATTGTTTTGA

Function

symbol description
popdc2 Predicted to enable cAMP binding activity. Acts upstream of or within cardiac conduction; heart looping; and striated muscle cell differentiation. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be active in sarcolemma. Is expressed in heart rudiment; musculature system; pectoral fin bud; pericardial region; and somite. Orthologous to human POPDC2 (popeye domain containing 2).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0030552 cAMP binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000009_09878612_09881564.mRNA True 1443 mRNA 0.48 3 9878612 9881894

Neighbor

gene id symbol gene type direction distance location
CI01000009_09866000_09866290 NA coding upstream 12218 9865723 ~ 9867040 (+)
CI01000009_09853929_09854476 SAP18 coding upstream 24110 9853929 ~ 9856587 (+)
CI01000009_09783235_09785477 IL17D coding upstream 93049 9783235 ~ 9785563 (+)
CI01000009_09770695_09782443 IFT88 coding upstream 96076 9770695 ~ 9782536 (+)
CI01000009_09716074_09733349 ZMYM2 coding upstream 144234 9714372 ~ 9734378 (+)
CI01000009_09952526_09962840 WARS2 coding downstream 70632 9952526 ~ 9964279 (+)
CI01000009_09967529_09989449 TBX15 coding downstream 85490 9967384 ~ 9989467 (+)
CI01000009_10103558_10119209 GDAP2 coding downstream 221664 10103558 ~ 10119220 (+)
CI01000009_10268535_10269640 NA coding downstream 386641 10268535 ~ 10269784 (+)
CI01000009_10319216_10329706 PLCD4B coding downstream 437322 10319216 ~ 10329836 (+)
G56383 NA non-coding upstream 1948 9873232 ~ 9876664 (+)
G56320 NA non-coding upstream 209433 9668742 ~ 9669179 (+)
G56306 NA non-coding upstream 223886 9647928 ~ 9654726 (+)
G56243 NA non-coding upstream 390068 9488185 ~ 9488544 (+)
G56411 NA non-coding downstream 10939 9892833 ~ 9897455 (+)
G56412 NA non-coding downstream 15833 9897727 ~ 9898245 (+)
G56384 NA non-coding downstream 17793 9899687 ~ 9906776 (+)
G56386 NA non-coding downstream 26799 9908693 ~ 9914394 (+)
G56417 NA non-coding downstream 34975 9916869 ~ 9917173 (+)
G56100 NA other upstream 748326 9129300 ~ 9130286 (+)
G53651 NA other upstream 3630220 6245564 ~ 6248392 (+)
CI01000009_05931829_05943829 KCNH3 other upstream 3945811 5931718 ~ 5943899 (+)
G53388 NA other upstream 4339558 5522242 ~ 5540638 (+)
CI01000009_11761868_11765848 ORMDL1.S, ORMDL1 other downstream 1878892 11761606 ~ 11766944 (+)
G57811 NA other downstream 2052048 11933942 ~ 11935251 (+)
CI01000009_12432736_12435509 NA other downstream 2550664 12432538 ~ 12436017 (+)
G57682 NA other downstream 2943575 12825469 ~ 12892339 (+)
G57691 NA other downstream 3024550 12906444 ~ 12918465 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location