CI01000009_10103558_10119209 (GDAP2)


Basic Information

Item Value
gene id CI01000009_10103558_10119209
gene name GDAP2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 10103558 ~ 10119220 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000009_10103558_10119209.mRNA
ATGGATCCCTTGGGAGCTCGTTCCCAGTTTTTGGAGGTCCAAAGCCTCCACACGTGGGACCAGCTTCAGGGAGTCCACGATGAGGTGGATGGAGAAAACCACTTAAGGAAGGAGAAAGACAAGCTGACAAATCATGTCAACTCCTTAACGTCCCCTTTCCCCTTCAGACAAGACATCAACAGCAAGATTGTACTATTTAATGGAGATGTGGCACTTTTAAACTGCACTGCAATCGTCAATACAAGCAATGAGACCCTAACAGACAAGAACCCCGTATCAGACAGTATCCACAGATATGCCGGACCTGAACTACGGGATGAACTACTCAAACTGAAAGGATGTCGAACCGGTGAGGCAAAAATGACAGAGGGTTTCAACTTGGCTGCACGCTTTATCGTTCATACAGTTGGACCCAAATATAAAGCCAAGTACCGGACAGCTGCAGAGAGTTCTCTATACAGCTGCTACAGAAACGTCATGCAGCTTGCCAAGGAACATGCCATGGTTTCTGTGGGTTTTTGTGTGGTCAGCACAGTCAAAAGGGCGTATCCACTGGAGGACGCCACACATATAGCATTAAGGACTGTTCGTAGATTTCTGGAGAACCATGGTGAAAACATTGAGACGGTGGTGTTTGCTGTTTCGGATGTTGAGGAGCCAGTGTACAGGAAGTTAATGCCGTTGTATTACCCACGTTCAAAAAAAGAGGAGAGAATCAGTCTGCCTCTCCTCCCTGCCGACATTGGCAATTCTGAGGGGGAGCCCGTGGTCCCAGAGAGACAGATCCGCATTGCTGAAAAGCCAGGAAATCTAGAGGGTCTGCCGCACCCTGTTACTGATCTGGCTGATCTCTTCAAAACCTTGTCCTCATACATGCCCTTTTATCATTGTGATGCAGGTCTGCTTGTCATTTTTGGAGTAATATTAAAGAAAGCAGATGACTCCGGGGATGATTCACTAGAATCCGACCTGGGGCTGGTGGGAAGTCATGCGTTTGCTCGTATGGAAGGGGATGTGGATAAGCAGCGTAAACTCATCCTTCAGGGCCAAATTTCAGAAGCAGCCCAGCAGAAACAGCACCAAAGAAACTATAACCGCTGGCTTTGCAAAGCTCGTGCAGAGGACCTCTCAGACATAGCAGCGTTAAAGGCGCTATATCAGACTGGTGTTGATATGTGTGGTAGGACGGTCATGGTTGTTGTCGGCAGGAATATTCCAGTTACACTTATTGATATGGAGAAGGCTTTGCTGTATTTCATCCATGTGATGGACCATATCACAGTGAAGGAGTATGTGATGGTGTATTTCCACACACTCACCAGTGAACACAACCACCTGGACACAGACTTTCTGAAGAAGCTCTATGACATTGTGGATGCCAAGTTTAAGAAAAACCTGAGGGCTTTCTACTTCGTTCACCCGACGTTCCGCTCCAAGGTCTCTACATGGTTCTTCACAACATTTAGTGTATCAGGCCTTAAAGAGAAAGTCCATCACATAGAGAACCTGCAGCAGCTCTTCACCTGCATCCTGCCTGAGCAGATCGACATCCCTCCTTTTGTCCTGGAGTATGACACACGGGGTCAATCAATCAAGTCTAATAATAACAGATTGAAAACTATGGCTCTTGAATCTCTTACAAGTGATCACCCGGCACTAGATCTGCACGTTTAATCGTTAAAAGA

Function

symbol description
gdap2 Human ortholog(s) of this gene implicated in autosomal recessive spinocerebellar ataxia 27. Orthologous to human GDAP2 (ganglioside induced differentiation associated protein 2).

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000009_10103558_10119209.mRNA True 1685 mRNA 0.47 14 10103558 10119220

Neighbor

gene id symbol gene type direction distance location
CI01000009_09967529_09989449 TBX15 coding upstream 114091 9967384 ~ 9989467 (+)
CI01000009_09952526_09962840 WARS2 coding upstream 139279 9952526 ~ 9964279 (+)
CI01000009_09878612_09881564 POPDC2 coding upstream 221664 9878612 ~ 9881894 (+)
CI01000009_09866000_09866290 NA coding upstream 237164 9865723 ~ 9867040 (+)
CI01000009_09853929_09854476 SAP18 coding upstream 249056 9853929 ~ 9856587 (+)
CI01000009_10268535_10269640 NA coding downstream 149315 10268535 ~ 10269784 (+)
CI01000009_10319216_10329706 PLCD4B coding downstream 199996 10319216 ~ 10329836 (+)
CI01000009_10338738_10339712 BCS1L coding downstream 219518 10338738 ~ 10339774 (+)
CI01000009_10341830_10347798 CYP27A1.2, CYP27A1.4, CYP27A7 coding downstream 222610 10341830 ~ 10348005 (+)
CI01000009_10361969_10374788 MCM3AP coding downstream 242749 10361969 ~ 10375458 (+)
G56456 NA non-coding upstream 45026 10058274 ~ 10058532 (+)
G56439 NA non-coding upstream 83215 10020106 ~ 10020343 (+)
G56417 NA non-coding upstream 186385 9916869 ~ 9917173 (+)
G56386 NA non-coding upstream 189164 9908693 ~ 9914394 (+)
G56384 NA non-coding upstream 196782 9899687 ~ 9906776 (+)
G56392 NA non-coding downstream 139308 10258528 ~ 10259660 (+)
G56507 NA non-coding downstream 163853 10283073 ~ 10284524 (+)
G56509 NA non-coding downstream 169630 10288850 ~ 10289512 (+)
G56540 NA non-coding downstream 171239 10290459 ~ 10292559 (+)
G56393 NA non-coding downstream 184262 10303482 ~ 10304485 (+)
G56100 NA other upstream 973272 9129300 ~ 9130286 (+)
G53651 NA other upstream 3855166 6245564 ~ 6248392 (+)
CI01000009_05931829_05943829 KCNH3 other upstream 4170757 5931718 ~ 5943899 (+)
G53388 NA other upstream 4564504 5522242 ~ 5540638 (+)
CI01000009_11761868_11765848 ORMDL1.S, ORMDL1 other downstream 1641566 11761606 ~ 11766944 (+)
G57811 NA other downstream 1814722 11933942 ~ 11935251 (+)
CI01000009_12432736_12435509 NA other downstream 2313338 12432538 ~ 12436017 (+)
G57682 NA other downstream 2706249 12825469 ~ 12892339 (+)
G57691 NA other downstream 2787224 12906444 ~ 12918465 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_037758 gdap2 coding NC_007120.7 CM002893.2 20806334 ~ 20853467 (-)
bowfin (Amia calva) AMCG00014536 gdap2,LOC104943794,LOC104954255 coding CM030128.1 CM030128.1 16737483 ~ 16765552 (+)