CI01000009_10491868_10508777


Basic Information

Item Value
gene id CI01000009_10491868_10508777
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 10491401 ~ 10509009 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000009_10491868_10508777.mRNA
TTATAAAACTGACAAATCAGTATGTTTTATCACTTGCAGGACTGTATTTATGATTCATTCATGGGTGATAATCTATTTCTGGTCTGTCCGATTCTTGTTTTTGAAATGAGCGGCTGTTAAAGGTGAGATGACGTTATACTTCAATCCTGCCGTTATTTTCGTAATATTACGCTTATCGCGTGAGCGAAAAATAGTTGTAATCTATCCGTTTACAAACATTTGCAGTTGTTCTCTTGTTTTTCTGCTATAATTAGACAGATTGTTTTAAATTACAATTGTTATTGATAAAGTTAGAGGATATCACAAACATTATTTCACACAGTCACATTGTACAGTAGCTATATCTGTTATAATAATCGGTGTCTCTTTTAATAGATCTGCACGATCAGTTGACAGTTTCTTTCAGATGATGTTATGAGCCCTGGATCTGACGATATATCCATCAGTCCTCGGACTTGAAATAGGAAATGACACATCCAAACATCAGCTCAAAATCCATTTTATCCTCTGCTTTGAGTGGAAATATGGACTGCAGCGGTGTTGCACTAGGTGTGGATGTGGAGAATAGTTTTGGACAGAAGATTTGGCAGAACCTCCCTTCAGTGGTCCATCTGGACCTCCTATCCTCTAAAGGTTCTCCTCAGCTCCCGGAGATGCTCCTGTCACCCATGTTTCAGGATTCATGTCCCAAAGCTTTTCTGCTGTCAAGCCCAGAACTCACCCTACTCTCATTGAACAGAAACTCTCCGGGTTCTCCGGCAGGTGCTCCACAAATGTGTTTCATGCCCACTCTTGAAGACAATGCACAATACATGGTAGAGCCTAGACACAACCCCAAACCTCTGCAACATGGTTGTTCTACAAGAGACTATCAAGTGGGCACCAAATCACTTTCCTCAGAGCAAGCGCCACATCAAAACAGGAAGAACAATGCTTCATGGGTTGACAGTGTGGAGGAAATGGAGGAAGGATTGATGATTCAGTCATTGTGGCATCTCTCCCAGCATGTTTCATTGGCGAATCGAGCCGGACGTTTACAACAGAGGGTGTTGGCGGTGCTTGGTGAACATGCTTCTAGACACTATAGCCACCAACTGGAGGGTTTGAAGAGCAAACTTCTTGAAACACGTTGTTCCCCGCAGTGCCCCAGGACATCAGAGCATCTTTTTGAGACTTTTAATGCTGTAGAGATGCAGGGGGTAGAGCAGGCTCTTGAAAGAAATCTTCAATACCCTCAAGCACACGGGCAACCTCTGACATCCAGAGATGTGCAGAGTTTAGCACACGGTGGTCATGCTGTTCTCCACAGGGTGCTGGAGTCTTTGGACTCAGACGCCACAGGGAGCAGCTCAGATGAGGAGTCGGAACATGAGGACACCAGAGAGACCTCAGTGGAACCGCAATGGCTGAAGGACAGAGCTGAACTCTGCAGTCGCTGGACATGGCTGCAGATGAGACTGTCTGAGCTGGACTCTCACATTCAGCAGCTTGGAAAGCTCCAGCAGCAGATCCTCTCTAATAAGGGTCATGTGGTTTTAGCAGAGTCTCAGCCCCTGACGGACAGGCAGATCCAGCACACCCTGTGGACAGAGACTATGGATCTATCGTACACGGCGGGGAACATGCGAGATTTGCACTCTGATCTAGAGATGGAACCCAGCAGCCCCACACGTCTTCTGAGGAACATTGAGAGACAGAGTGCACAGCTGACTCAGATTGTGAACAGTCTGATGCCATCTTTGAGTGCTTCACCTTCTTCATCACCTATGTCTAAAGGACCATGCGATCGCTGGAGAGGCCAACAGAAAACAGCTTATAGCAGCCAAGTGACACACACGGGTACCTTTGTTCCCAGTGGGCAACAGTGTTTACACAAAGTCAGGCAGAAGAGGAAGCGAACATGTCACAGACGACAGTATCTCCCTCAGGTGGATGCCATTTGTATGTCAGCTCGGACACGACCCCTTCTCACCTATCACAAGCCTAGACTTTTCGTCATGGACCCATTGTCTCACAGAGAACAGGTCCGGCAATCTTCCCCTTCTCTTTTTCCCAATTGCGCCTCCTGTGATTCTGCCTCTGTGTGCACAAACCCTGAATGCCCCCGCAGAAAAGAGAAAACAGACGGCAAATTGCATTGTGTTCTATCGCTGTCCTCAGAAACTCCATCATCCTTCCATCTGCAAAATGCTCTGTTTGAAGAAAATGTGCTTCAGCGATCTCTCCTCGTGAAGAATGAGCGGTCCAGTCCCCATCACTGTCTCGGCTCCAGAGGCAGAGTCTCCCGATCGTTATTCCACTTGCAGATCTCCAGTATTACACCCAATTCTGATCTGGTCTCCCAGAGTGATGACAGTCATGTGGAGGAATCTTTAGAGGATGTGACCATCTCTAACTGTACACCCACACAACAGAGAAACTCACAGTTCCCATTGCGCAGGAGAAACTGTGAGAGTGTTTCCAGCATTGATGACATTGTCATTCCCATGTCTCTGTTCAACTCAGTGAAAGTGGAAAGACTTCAGTATAAGAACATTTTGACACCCAGTTGGCGAAAGGTGGATATTTCTCCTTTATTGAAGAGAGACGAGGATGAGCAAGAGGAGGGGCTGGAAGCAATAGAAGATGAAGATTTCTTTCAGAGACACCAGAGTTATGAGCGTATAGAGAAACTCTGCTGGTCCTACTGGGATCAGGACAGAAGAAACAGGATCAGGCCATGTAAGAGAAACTGTTCTTCTGTGTTTGTGAGAGACCACCCTGCTCACTGTCACCCACCTGTATATTCTCCTGTCCCCTCCACCTGGACCTTCAGTCCTTCTGAAGCTCCGTCAGAAGCCAGTGTGGAGGACAGAGAGACTTCCAGAGCACCAAAGCACAACATCTGAGATGGACCAGGAAATGACATCATACTGAGGCACAATCTCAGCCATCATGGTTCCACTCCCAGTTACATAAATCACTCTTTCTGCTTTTAGGCTGTTATGACACAGTGTAATAACCTGATGTTTTTCACATTGCTTCTTTAGCCTCTAAAGTTTTTTTTTCCTCAAAATATTTTTGTATAAATTATTTTTAAACAGTGTTTGTATCCTACAGCCTTGTCCACAGTGTAATTTA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000009_10491868_10508777.mRNA True 3120 mRNA 0.46 13 10491401 10509009

Neighbor

gene id symbol gene type direction distance location
CI01000009_10477699_10485965 NA coding upstream 4048 10476658 ~ 10487353 (+)
CI01000009_10454695_10474253 SLC12A8 coding upstream 17148 10454036 ~ 10474253 (+)
CI01000009_10445879_10449126 ZNF148 coding upstream 42151 10445879 ~ 10449250 (+)
CI01000009_10427119_10442186 SNX4 coding upstream 49150 10427119 ~ 10442251 (+)
CI01000009_10395109_10411388 OSBPL11 coding upstream 79780 10394885 ~ 10411621 (+)
CI01000009_10555555_10560050 NA coding downstream 45341 10554350 ~ 10560398 (+)
CI01000009_10583435_10617169 MAP2 coding downstream 74426 10583435 ~ 10617169 (+)
CI01000009_10644080_10691030 CPS1 coding downstream 135071 10644080 ~ 10692050 (+)
CI01000009_11342784_11347580 NA coding downstream 833775 11342784 ~ 11348827 (+)
CI01000009_11434018_11455253 NA coding downstream 924783 11433792 ~ 11455635 (+)
G56564 NA non-coding upstream 137717 10352929 ~ 10353684 (+)
G56393 NA non-coding upstream 186916 10303482 ~ 10304485 (+)
G56540 NA non-coding upstream 198842 10290459 ~ 10292559 (+)
G56509 NA non-coding upstream 201889 10288850 ~ 10289512 (+)
G56507 NA non-coding upstream 206877 10283073 ~ 10284524 (+)
G56579 NA non-coding downstream 3404 10512413 ~ 10512640 (+)
G56567 NA non-coding downstream 9807 10518816 ~ 10533725 (+)
G56548 NA non-coding downstream 122089 10631098 ~ 10638452 (+)
G56594 NA non-coding downstream 186717 10695726 ~ 10696013 (+)
G56628 NA non-coding downstream 206601 10715610 ~ 10715888 (+)
CI01000009_09853929_09854476 SAP18 other upstream 634814 9853929 ~ 9856587 (+)
G56100 NA other upstream 1361115 9129300 ~ 9130286 (+)
G53651 NA other upstream 4243009 6245564 ~ 6248392 (+)
CI01000009_05931829_05943829 KCNH3 other upstream 4558600 5931718 ~ 5943899 (+)
G53388 NA other upstream 4952347 5522242 ~ 5540638 (+)
CI01000009_11761868_11765848 ORMDL1.S, ORMDL1 other downstream 1251777 11761606 ~ 11766944 (+)
G57811 NA other downstream 1424933 11933942 ~ 11935251 (+)
CI01000009_12432736_12435509 NA other downstream 1923549 12432538 ~ 12436017 (+)
G57682 NA other downstream 2316460 12825469 ~ 12892339 (+)
G57691 NA other downstream 2397435 12906444 ~ 12918465 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location