CI01000009_12130688_12146560 (CTDS1, CTDSP1)


Basic Information

Item Value
gene id CI01000009_12130688_12146560
gene name CTDS1, CTDSP1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 12130688 ~ 12146942 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000009_12130688_12146560.mRNA
ATGGATGCAGTTTCTTCACAGTCCCTTTCACCTGCCCTTTTCATCACATTTGTAGACCTGCCACCCTCGTGTCCTGTGCCGGGATGCAGGTGTGCACACTTAGCGATGTTTCACTATTACGGCCTGTCAGATTCTCTGGATATTTCCAGAGGGTCATATGCACGGATAGCGTGTGTGCCACCATTGACAAGTCAATGTACCCCTCCACATGCTGCATCCTCAACGAAGAAACCCCGTAGTCGTGGCATTTTCCACAGTCTCTTCTGCTGCCTTTGTCATGACGAAACGGATCACGTGCCTGTCAATAACAATGCCCCGCTGCTGGTGGAAGAGAATGGAACCATCTCAAAAGCAGGCTGTGGGCTCAACGAATCCCTTCAGTTTTGTGAGCCCCCTCTGCAAACACAGATCTCTGGCTGTTCTTGCAGGCTCTCTAGAGAAAGCAAACCTATGGGAGAATGTTTGGAGTGTTTCCCTTCTTCTGACCTTTGCCAGTGTTTTGGAGAACGGATGTCTTTTGTCGAAAGCAACATTACTAAATACTTGGAATCCTCTTCCTTTTTTAAAAGCGAGCACACCGAAGTAAACATGCCCGCTGAACTGTGCTTTGGCCATTCGGAGGTCTCTGGACAAGGAGATCCTAAAAAGGAAAACCAGTCTTTGGAATGTGCTGGAGAATTGAGCACAGAGCAAGAAACATCTATTGGCCAAAACTCCATCGAATTGAATGAAGCTGATGGACTTTGCATTGAAAATGCTCAAATCAATGGTGAATTTTCAGATCAGTCTGGTTCGTCTGGATACAGCTCTTTGTTGGACAGCTGCTCTGAGCACAGTGAGTGTTTTGAAACAAGCAGTTCTTCAGTTGACTTGGTTGAAATATGCCAAAATGATGAACTTTGTATTGCATTTGTGCCAAGTGATCAAAGTGAGATTTCTGAACATGATGCAGAACAGTTAACTTTGTCTGAGATGAGCCTAGAAGATTGTGAGTCTTTTCAACAAGATGAAGGACAGATCATTTTAACCGAGATGAGATTAGATGATTGTGATGCTTTTGAACAAGATAATGCAGAACAGTTAAACTTATCTGAGATGAGCCAAGATCTTTGTGAGGCTTTTCAACAAGATGATGCAGAAGAAATCATTTCGCCCGAGATGAGTCTAGATGATTATGAGTCTTTTCCGCAAGATGATGCAGAACAGTTAACTGAGGAAGATCTTTGTGATTCTTTTCCTCAAGTTGGTGTTGAGTCCTCACAATTTTATCTCTTAGATTATGAAATGCTTTCTGGGTGTGGTGCAGAATATCTGGAACAGTACAGCAAGTGTGAAAACAACAGTTCTGAAGACAGCTTATCTGAACAAAACGATGTAGTTGAACTAGATTCTGAAGACTGTGAGACATCTAAACAGTCCCAGCCTAACAATCAAAACAAGCTTGATGAATACCATGCCACACATTTTGAATCCCCTGAACTGTGTCAGGACTCTAAAGAAAGTAAGCCATCTGACCACTGTGCGTCCCTTGAGCAAACACAGCTTACTGGGCAAATGGACACCTCTGATGACAGAGTTCTGCTAAACAGTCTAGATGATTGCACTTGTTTGTCGGAGAGCTTTGATTGTATCCGGACCTTTAACTCTTCGACTGAAGGATATCAAGACTGTAACCAACTCTTTGAGCACAGCGAATCCTCTGTATCTTTTAAGGCTTTAGAACAATGCACAAGCTGTGGAATGTACTTCGAAAAATGTGACGTCCTTGAACAATGCACTCCCTCTGTGCCCACTGACCATTCTGAGGGCCCACATCAAAGCAGACTTGCAGAAAATTGCCCGAAGTTGTCAGGAACACACGACTCCGTCTTTCACAAGCCTGAAGCAAAAAACAAAGAAAATTTGCCTAACCATAGCAGCAGAACTGAGGGTAGGAAACCATCTGAGTGTGATGCCATGTTTTCTGGATCAATGGAAATTTTTGAGGCTCGCTGGCTTTCTCAATTTCTCACTGATCTTTTGAGGCATAATAAAGAGACTTCAAGTCTTGCTGCTGAAATTATGACCACGGGAGCAGGTTCTTCAGATGAATCAAGCGAGGAGGAGTACGGTGACTGCATGGATGCTAAAAGTCAAAGTAGCTCTGATGAATCATTCAAAAGTTTTGTCGATGAGTCTGAATCGTTTGAAATCTTCTCAGACCAACCATGTGATAAGCAAAACCTTTTTGCAGAGGATGATGAGTCCTCAATTCAAATGCAACAGCCAGATGAGTGTCATGAAGAAGGTAATCAGAACTTTGACATGTATACACAGGGAAATGATGCTTGTGAAGAAGCATGCAAGATTGATTCTGAGCGACAAGTGACAGGAAAGCAAAGCAGTAAAACATATGCTGAAGCTGTAGCTGTTGGACTCACTGTTGAACCAGTTCAAATCCAAGAATGTGCCAAACCAGATGAGGTCTGTGAAACTGAAGCTTATGGGCCTGATTTTATTGAGGAGAGTCTTGCATTGTATTCTGAGGCCAAGGGCAGTGATCTTTGCGTCAAAAATGGAGAGGTCGTTGAACCCCATGTTGATATGCATGTACAGTTGTCCTGTGTTGGAGCCGTTGAAGGTTATGGACTGGAAGAAGTGGTTGAAAATGCTTCCAGTAATATATCTGGAGATTCCACAGGGTCCTGTGATGTAAAGGACACATTTCAAGAAGCTGATACTTCAGAATCATCTGAAGAAGAATTGTTGGAAAATGAGGTCTGTCAGAATTTACCTGAATTTCACAGGTCTGAGAACAAGGAAATCATACAAGATCTCAGTTCTGTGGTTGAAACTGATGAAAATGAGGAGACACACCCTAACTTTTATGAAAATGAGGGGGCTCATGGACCTTGTTGCGGAGAGATTGAAACTACTGAAGATGAAGAAACAACCCTTTTGGATTTTGAAGATCTTGTGAGATGTTCTGAGGAAAGTGATAAAGGTAAAGAGACACCAACTGCTGCTCAACTGCTCTCTTGTGCCTTTGAGGAACAGTCAAACACAGAGATTGGCTCTCTTTGTGTATCAGATGGTCAGCAAGAAACCCATACTGAGTCAAAAGACACCTCTGGGCTTCTTCATCCTTCTGAAACAGATGGTCTGCCCGAGGAGAAAGAGCAAAATGAAAAATTAGAGGAACTTATACATCAAATTGCTAGAAGTGAGGCATCTGAACAGGACACGTTTTTTAAGTCTGACCAAAACAAGACAAGTGAGCAGAGTGATTCTTATGAGGATAGAGATGTATCTGAAGATGAAGAATACTCAGAGGACTGCGATTGTGAAATATGTGTTCCGCCCATAGATCAGGTCCCAGCCAAGCCACTTCTTCCACAGATAAAGTCTAAAGATGTAGGGAAGATCTGTGTAGTCATTGATCTGGATGAAACACTAGTCCACAGTTCATTCAAGCCGGTAAACAATGCTGACTTCATCATTCCAGTGGAAATTGATGGGACAGTACATCAGGTGTATGTGTTGAAGAGACCTCATGTTGACGAGTTCCTCAAACGGATGGGGGAACTGTTTGAGTGTGTGTTATTCACTGCAAGCTTAGCCAAGTATGCCGATCCTGTCTCGGATCTGCTGGACAAGTGGGGAGCTTTCCGAAGCCGTCTTTTCCGGGAATCTTGTGTGTTCCACCGTGGAAATTATGTCAAGGACCTAAGCCGTCTAGGCAGGGATCTCAACAAAGTCATCATTGTGGACAACTCGCCAGCCTCCTACATCTTCCACCCAGACAATGCTGTACCTGTAGCCTCCTGGTTTGATGACATGTCTGACACAGAGCTGCTGGATCTCATCCCTTTCTTCGAAAGACTGAGTAAAGTGGATAATGTCTACACTGTGCTCAAGCAGCAGAGGACTACTAGCTAGCGAGACACTAAGGGCAGCTGTCACTATGGGGCCAGGGAGGCTGCTGGGCTCGGAGCACCACACTGCTTCCCCCTAACAGGACCAGCCACTAGCTCAGTCCTCATCACCTACCCAGAATTCCATTCACATGATGTTTGATAGAGAAAAGAAGGCGAATGACAGAACTGTGAAGGACTGCTTTATCTATTACAAGCATAAAATAACAAGCTGATTGTTTTAACACTCGAATGGGTGAATCTCAGGAAAGCTGACAAGACCATATTTAACCCTGAAGTCAAATAATAGAAATAAGAAATTATATTTTGCTTAAGAAAAATGATTTTGCATTTGTGAGAATATTTTGACAACTAAGCACATTCCCCCCAATTTCCGCCATGATGCA

Function

symbol description
ctdsp1 Predicted to enable RNA polymerase II CTD heptapeptide repeat phosphatase activity. Orthologous to human CTDSP1 (CTD small phosphatase 1).

GO:

id name namespace
GO:0045665 negative regulation of neuron differentiation biological_process

KEGG:

id description
K15731 CTDSP; carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000009_12130688_12146560.mRNA True 4300 mRNA 0.43 9 12130688 12146942

Neighbor

gene id symbol gene type direction distance location
CI01000009_12050866_12109305 SPEG coding upstream 20590 12050773 ~ 12110098 (+)
CI01000009_12028975_12032758 NA coding upstream 97651 12028495 ~ 12033037 (+)
CI01000009_12022660_12022944 NA coding upstream 107300 12022560 ~ 12023388 (+)
CI01000009_11993879_12004644 NEMP2 coding upstream 125923 11993644 ~ 12004765 (+)
CI01000009_11892226_11892558 NA coding upstream 238011 11892226 ~ 11892677 (+)
CI01000009_12198114_12221988 NA coding downstream 49757 12196699 ~ 12221993 (+)
CI01000009_12249416_12290497 COL18A1 coding downstream 102021 12248963 ~ 12290598 (+)
CI01000009_12351325_12366549 PCBP3 coding downstream 204383 12351325 ~ 12366597 (+)
CI01000009_12387605_12388405 LRRC3 coding downstream 238280 12385222 ~ 12390665 (+)
CI01000009_12432736_12435509 NA coding downstream 285596 12432538 ~ 12436017 (+)
G57813 NA non-coding upstream 192049 11938378 ~ 11938639 (+)
G57792 NA non-coding upstream 295728 11834738 ~ 11834960 (+)
G57719 NA non-coding upstream 308157 11815069 ~ 11822531 (+)
G57790 NA non-coding upstream 342904 11787576 ~ 11787784 (+)
G57789 NA non-coding upstream 343362 11786904 ~ 11787326 (+)
G57724 NA non-coding downstream 20589 12167531 ~ 12168221 (+)
G57737 NA non-coding downstream 24421 12171363 ~ 12172140 (+)
G57850 NA non-coding downstream 41603 12188545 ~ 12188820 (+)
G57704 NA non-coding downstream 158697 12305639 ~ 12372174 (+)
G57811 NA other upstream 195437 11933942 ~ 11935251 (+)
CI01000009_11761868_11765848 ORMDL1.S, ORMDL1 other upstream 363744 11761606 ~ 11766944 (+)
CI01000009_09853929_09854476 SAP18 other upstream 2274101 9853929 ~ 9856587 (+)
G56100 NA other upstream 3000402 9129300 ~ 9130286 (+)
G53651 NA other upstream 5882296 6245564 ~ 6248392 (+)
G57682 NA other downstream 678527 12825469 ~ 12892339 (+)
G57691 NA other downstream 759502 12906444 ~ 12918465 (+)
G57701 NA other downstream 859701 13006643 ~ 13023138 (+)
G58028 NA other downstream 993436 13140378 ~ 13143608 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_037373 ctdsp1 coding NC_007120.7 CM002893.2 41690153 ~ 41741420 (+)
bowfin (Amia calva) AMCG00008841 ctdsp2,LOC106583267,LOC106572594,LOC105013607 coding CM030126.1 CM030126.1 13105526 ~ 13117044 (+)