CI01000009_13394582_13476351 (UBE2E3)


Basic Information

Item Value
gene id CI01000009_13394582_13476351
gene name UBE2E3
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 13392306 ~ 13476807 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000009_13394582_13476351.mRNA
CTATAAAAAAAAATGTATGCAGACTATACTATTGAGCAGAAAGTAATAGACTATAGGGAGGTATGCAAAATAAAGAAGTAGGCTACACTCTACTGACTATAAAGAAGTCGTACACACTGTAGTGAAGCAGACAATAGAGAAGTCATGCAGTAAGTCATGCAGTGCTGAACAGGGACTCCCACCTGCACTGGAATTCCAGCCAAACTTCTCACCCACGCTCAAAGTTTCCGTGAGCTGATTGCTCTCACCATGGAGCCCTCACAACAACAACATGTCAAAACTTCCTCATGACGCCACAACATCCCCTCATTCTTGACAACACGAGACACGACGTTCGCCGGTGATGTCTTCTTCAAATGCATGTTGTCACAATTTTAAATCCAGCTCAGGTGGAGCATATCGTGAAGTGATACAGTTTCACGTTGGTTTAAAGGTTGTGTGAGACCATCCAAAGCGGTAGACGCTTATGTCCACGCGCTGTACAGCGCCACCCGTCGGTTCTGAGTAAAACTGCAGCGCCTCCTCTCCTTCCTACTCTCCAATGTTCACAGCTCGGCCGGAGCCCGTCGTCTTCCCGGCTCCATTTCAACTGGATTTTTAACACTCCTAACCACCCCAGATCAGGACAGGACCGCGTCTAAGGTAAAGGAGAAGCTCTAAGGGTATCGTAGAGTCCACATTAGGCGGGGTAACATCGTCCTTTCTTAGTGTTTTCAGGTCTGAAGAGAGGGGAGCTCGAAACTGACTTCACGCATCAGTTGGTACACCATGCTGATACTGGAGTGCCTCCTACCATAACAAACCTCTTACAAAGGATTTTAAAAGATCCAATCTGAATCTTTTCGCCCCGGCGTGCGTTAAACGACTCGAATTTTCCTCGCAATCCGCTCGCGATATCGCCTTGTTCTCCTAAAGTGAAGGGGGTGGACATGCTGCGAATAGGTGCAATTATTGCTTTCCTTTGCAGCTCTTGAAATCTCCTTCTTCTCAGCGATAGATTCTGCTGGAACAGCCGTGTGTTTTTCTCGTTTAGTCTCATGAGCTCAGCCACTTGCACCTATTCAGCAGATGGAAAGCGAAAAAACTCAAGGCTGTTTTCGCAGAGGAGGGTTTTGTGAACGTGTGATGGTCGCTGCAGCTTGTAACATTAAGCGCAAAACTGATACAATGTATCGCGGATCCATGTGAAACGTCATAATGGTTGCAACAATGTTGCCGCTGCGCTATTTACAAATACTATCAGCTCAGTCGCTAATGGATTAAGTTGGTGTGTATGTGGCTTAACGTGTGAAAACGTGGACGTTTTGTCCTTCAGGATGACAACAGTTTGATGTAATTGGATCGGATCGGTTGATCTATACGTTTGCTTGTGTTTTCAGAGTCCAAATATTGGATTCATTTGGATTGTTGCTCTAATGGCAAGCAGTTTTAGCGTTTATTCCATAAACGAATACCTATTTTTAAATGTTTACTAGTAGTATCAGTGTAAGCAATCCATTAGATACTAGTAGTGACTACTTTCTAGTGTTTATTCATTACTAGTATTAATTCCAATAGTGAAAAGTAACTATTTCATTATTACTAGTGACATGTTTTTGCAATTAAATTCTATGAGAATCTGTGATTCAGATATCAGCTATTCACTTCCAGCTAGTATGCATTCCAGCTGTTGCTGGTACCTTTTCAAGTTTTACTTGTACCTGTTCATTAGATACCTGTGCTTTTTCTTTAGTTTCTTAGAACTATTCAAATAGTTTCCATTATCTATTTTAGTTTCCCTGAAAGGCCTATTTTTTTGGAGACTTGTGTGTTTTCCAGTTGTTCCTAGTAACATCTTTAATCTTACTAGTAAATTTTTAAATTGAACTTTAAAGTAGCCATTCTGACTCACTTATGACCTTTTCACAAGGAAATGTTACTTGAAGAAACTGGTATAGATACTAGTGTATAGTGTATCTATAAAAAAAAAAAAAAAATAGATGCAGAAATAAATGTTAAAAGAGCTTGCCATGACAATCTGATTGTTTGTAGAATTAGTCTAAATTAAGTTTCTGTGATATGTCACCTCCTGGCAAGCTCATCAAATACGGTATGACTTGCTTCTGTTTGTATTTAGAAACTTAAGGGTTAGGGTTCAAGGCGGTGTCGAGGTTAGGGTTTAAGTTTCCACTGAGCAAATTTGAGATTTGCTTAAACCCCAGAAGAACTTTAGGCCATTCTGTGATCGCAGTCAGCCCTGGTTCAGGACCTCTTGTTGTCCTTTACAAAGGTGGAAAATGTCCAGTGAAAGACAACGGTCAGATGATGAAAGTCCCAGCACCAGCAGCGGTAGTTCCGATGCGGATCAGAGAGATCCTCCGGTGCCAGAACCAGAGGAACAAGAGGAGCGAAAACAACCCACGCCTCCACAACAGCAGAAGAAATCCACCAAACTGTCCAGCAAAACAACAGCCAAATTATCCTCCAGCGCGAAGAGAATCCAGAAAGAGCTTGCAGAAATCACTCTGGATCCTCCACCCAACTGCAGTGCGGGACCCAAAGGCGACAATATCTATGAGTGGAGATCCACCATCTTGGGGCCTCCAGGTTCAGTCTATGAGGGGGGAGTGTTCTTTCTGGATATCACCTTCTCGTCCGATTACCCCTTCAAGCCACCAAAGATCAAGCCACTGCAAAGCTCTAATCCACTAATTATAAACAGGATTCATCCTCTGCGGTGGATGCCGGGCAGAGCCGGCGGCCCACACCCCCTCATTCTTTTGTCACCAGATGAAACGCAGAGCAACTTGGGGGCCGATCTCGCCTACGTTCGTTTAGGGTCGGTGCTCTGTGAAGTCGCTGCCTGCTCTCACTCGCTGAATGCGTTGTCCGTGAGGCCTCACACTGGCTGCCTGTGTCATGCTGGCTGTGTTTTCGACCGAGTCGGACTCCGAGACCACCGTGTTCATACAATACCCACATTGTGCCAGGCAGGCATGGTTATTTTGGTCGCTCGGTTTATGCTGCATCATGTGACGGACGTCTTAGTAGCTGCTGCAGGGGGCAGAGTCACGTTCCGTACGAGGATCTATCACTGCAACATCAACAGTCAGGGTGTGATCTGCCTGGACATCCTGAAGGATAACTGGAGCCCAGCTCTGACCATCTCGAAGGTCCTGCTTTCCATCTGTTCTCTGCTGACAGACTGCAATCCAGCTGTTCTGGACTCTGTAATTCACCATGACAAGGAAGCAGCACTGTGTAATGTACAGCCTCATATACTCACTCTGACAAGATATCTGACAAGTCAGGTAGACACTCCACAGAAGCCAGCGAGACTCTCTCATGAGTTAAAGAGCTGGGGGTTGTCGTGGGGTAAGGGTGGGCTTGAGTCTTACAAGGAGTTTTCCCAGCATGTATGTCATGGATATGCGATCATATGCTGTCCAGAGCCTTGAACATGCATATTTTCAGCCTTACTCCATACAGACAAACTCCCATCTCCGCTCGCAGCAGGAAAAGGCACATCTCGCATCTGTGGGACAGTTCTCTCAGGGACGAGGCCTGCCCTGAGTCATGTTTATATTAGCGTCTGATGCAGCCTTTCGCAGTAATATGAGCTTGCTTATGTACACTCTGGTAAGACATGCAGGTCCTTTTATAAATCATCAACCAGCTAGCTCAATCTCCCAAGGGAAAATGACATCAGAAGTGGATAAGATCGCTTTTATCACTATTAAGATTGCACATACCTTGAATCCAAACAAGCTAAACACACAGGCTACCATATGCTTGCGCTCAAATTAAAGATTAAGAACTTGCTTAAGATCATAAATTCATTTGTTTATCAGAAAATGTGGGTGTTGTTATCATTCTTTTATGATTTTATCAGGTTTAACTTCTTAAGAGTCAAA

Function

symbol description
ube2e3 Predicted to enable ubiquitin conjugating enzyme activity. Predicted to be involved in protein K11-linked ubiquitination; protein K48-linked ubiquitination; and protein K63-linked ubiquitination. Predicted to be active in nucleus. Orthologous to human UBE2E3 (ubiquitin conjugating enzyme E2 E3).

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K20217 UBE2E; ubiquitin-conjugating enzyme E2 E

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000009_13394582_13476351.mRNA True 3893 mRNA 0.44 9 13392306 13476807

Neighbor

gene id symbol gene type direction distance location
CI01000009_13194613_13197758 NA coding upstream 192605 13194437 ~ 13199701 (+)
CI01000009_12854692_12859028 NA coding upstream 531275 12854193 ~ 12861031 (+)
CI01000009_12646484_12653748 GULP1, GULP1A coding upstream 738449 12646484 ~ 12653857 (+)
CI01000009_12504532_12504815 NA coding upstream 887412 12504380 ~ 12504894 (+)
CI01000009_12432736_12435509 NA coding upstream 956415 12432538 ~ 12436017 (+)
CI01000009_13549003_13580198 ITGA4 coding downstream 72196 13549003 ~ 13580233 (+)
CI01000009_13696525_13718933 SSFA2 coding downstream 219718 13696525 ~ 13718933 (+)
CI01000009_13752424_13753460 NA coding downstream 275617 13752424 ~ 13753823 (+)
CI01000009_13798741_13799037 NA coding downstream 320077 13796884 ~ 13799191 (+)
CI01000009_13811227_13837798 NA coding downstream 334269 13811076 ~ 13838395 (+)
G58205 NA non-coding upstream 6109 13385986 ~ 13386197 (+)
G58168 NA non-coding upstream 9202 13382604 ~ 13383104 (+)
G58179 NA non-coding upstream 34186 13357918 ~ 13358120 (+)
G58176 NA non-coding upstream 38396 13353688 ~ 13353910 (+)
G58175 NA non-coding upstream 38707 13353380 ~ 13353599 (+)
G58252 NA non-coding downstream 46806 13523613 ~ 13585256 (+)
G58307 NA non-coding downstream 160477 13637284 ~ 13646396 (+)
G58301 NA non-coding downstream 269014 13745821 ~ 13748823 (+)
G58310 NA non-coding downstream 356734 13833541 ~ 13835879 (+)
G58389 NA non-coding downstream 498581 13975388 ~ 13978604 (+)
G58028 NA other upstream 248698 13140378 ~ 13143608 (+)
G57701 NA other upstream 369168 13006643 ~ 13023138 (+)
G57691 NA other upstream 473841 12906444 ~ 12918465 (+)
G57682 NA other upstream 499967 12825469 ~ 12892339 (+)
G58382 NA other downstream 556752 14039757 ~ 14039901 (+)
G58455 NA other downstream 769888 14246695 ~ 14258526 (+)
G58558 NA other downstream 1020129 14496936 ~ 14501514 (+)
G58649 NA other downstream 1172917 14649724 ~ 14652022 (+)
G58711 NA other downstream 1289852 14766659 ~ 14773773 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_038095 NA non-coding NC_007120.7 CM002893.2 43711688 ~ 43798248 (-)
tiger barb (Puntius tetrazona) G72472 NA non-coding NC_056707.1 CM032076.1 21995935 ~ 22056835 (-)