G207924 (gins3,LOC107707437,LOC107714024,LOC107573213,LOC107589181)


Basic Information

Item Value
gene id G207924
gene name gins3,LOC107707437,LOC107714024,LOC107573213,LOC107589181
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 25576068 ~ 25582312 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU282201
aaataaatcaacagtaaaagaatctgtgttttcatatttaattaatttactgaTCTGGTACATcaaaagtgacttaaatcaAGATTCCTTACAAAACAGTacaaaagattttaaaatataatccaAAGAGTCTCTAAGCACAATCAAAACAAAGCTCATTTACCCCTCtcgcattcacacacacacacacacacacactcgcgctcaCATTAACATCGTCTCCACCTTTTCTTATATAAGTCTCTCTGATCCTGCGCTCAGGCTTGCAGGTCAGTGATCTTCCTCTTGCGGTAATTGGTGACGAGACTGGAGGCGGTCAGCTGGGCGGCACGGCCTTTCTCCCACAGCTGGAAGCCGTTAAGGCCGCTCTGGCCTTGCCTGAACAGCGCCCTCTCCAGGCAGTCCAGTCGCTCCACCAGCATTGATGTGTCCTCGTTATATGCGTTCTGGGAAGAGTCCATGGTGCGTCGAAAACGGCcaataaatgtCTGTAGAACAGTCTGAGCGATCTCCAGGTTCTCTGGGCTGTCAAAGTGAAGCATCTGCGAACCCAGACCGTAGTAGTAAGGTCCCATTTTGTGAAGATCCACCACGTTGGCATCAGCTCCGAACACTGTCCTCCAGCCCTCGCGATACACTTTAGGCAGTTCCACAGAGATCACCCGCCGCTTCCTCTCATACAAGCCCTTAGCCAACCACAGCGGCATCTCCATCTTCGTGCCCTCAGGTATGTGGCGACTGTCTGCGTTCTTCTCCAGAAATCCGAGTCCTGGAAACTCCGTGTCGGTCTTACAGGGCAGCCGCTCCTGCGACAGCAAGATATCATCCAGAGAGAGGAAATTCTCCTCCATCCCCACCCCCGGAGACACGGGCATGTAGGACTGAGTGTCCATAATAACACTGCTTCCTCACCCAGAAACGGATAAACACACGTTgaaccagtctcacacacagagCTCAGAGCTTTCACAGAACACAAAAA

Function

symbol description
gins3 Acts upstream of or within heart development. Predicted to be located in nucleus. Predicted to be part of GINS complex. Is expressed in alar plate midbrain region; nervous system; optic vesicle; pharyngeal arch; and presumptive neural retina. Orthologous to human GINS3 (GINS complex subunit 3).

NR:

description
PREDICTED: DNA replication complex GINS protein PSF3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU282201 True 982 lncRNA 0.49 3 25576068 25582312

Neighbor

gene id symbol gene type direction distance location
znrf1 znrf1,LOC107589180,LOC107714072 coding downstream 3797 25496301 ~ 25572271 (-)
LOC103040081 snrkb,LOC108413384,LOC108268812,LOC107674965,LOC107589179,LOC107571964,LOC107714071 coding downstream 123977 25412186 ~ 25452091 (-)
ccdc113 NA coding downstream 298308 25270141 ~ 25277760 (-)
drc7 NA coding downstream 345057 25212565 ~ 25231011 (-)
c24h11orf49 cunh11orf49,c8h11orf49,zgc:92873,LOC107707434 coding downstream 425079 25143991 ~ 25150989 (-)
LOC103040521 NA coding upstream 98918 25681230 ~ 25685611 (-)
LOC111195867 NA coding upstream 509858 26092170 ~ 26095191 (-)
LOC111195834 NA coding upstream 514493 26096805 ~ 26099827 (-)
LOC111195836 NA coding upstream 661936 26244248 ~ 26246421 (-)
LOC103031232 arntl1a,LOC108439331,LOC107707455,LOC107753525,LOC107665721,LOC108269000 coding upstream 1031550 26613862 ~ 26640223 (-)
G207938 NA non-coding downstream 18701 25554247 ~ 25557367 (-)
G207934 NA non-coding downstream 108973 25464541 ~ 25467095 (-)
G207928 NA non-coding downstream 133913 25438049 ~ 25442155 (-)
G207926 NA non-coding downstream 145745 25430004 ~ 25430323 (-)
G207886 csnk2a2,csnk2a2b,LOC106573643 non-coding downstream 276376 25279365 ~ 25299692 (-)
LOC111195755 NA non-coding upstream 270593 25852905 ~ 25855561 (-)
G207964 NA non-coding upstream 310828 25893140 ~ 25894477 (-)
G207965 NA non-coding upstream 321595 25903907 ~ 25917560 (-)
G208008 NA non-coding upstream 424908 26007220 ~ 26013616 (-)
G208011 NA non-coding upstream 432435 26014747 ~ 26015003 (-)
G207903 NA other downstream 223394 25317002 ~ 25352674 (-)
usb1 NA other downstream 315901 25251235 ~ 25260167 (-)
G207772 NA other downstream 627217 24948131 ~ 24948851 (-)
G207707 polr2c other downstream 1047001 24524734 ~ 24529067 (-)
dnajc24 dnajc24 other downstream 1555754 23938925 ~ 24020314 (-)
G207940 NA other upstream 10319 25592631 ~ 25733304 (-)
LOC111195756 NA other upstream 336908 25919220 ~ 25938032 (-)
LOC111195825 NA other upstream 407126 25989438 ~ 25992494 (-)
LOC111195762 NA other upstream 497452 26079764 ~ 26086504 (-)
LOC111195761 NA other upstream 504339 26086651 ~ 26088415 (-)

Expression


Co-expression Network