CI01000009_13942733_13946356 (FRZB)


Basic Information

Item Value
gene id CI01000009_13942733_13946356
gene name FRZB
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 13942521 ~ 13946405 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000009_13942733_13946356.mRNA
GTTTAAAAAGATGAGCTTTTGTTATCCGTGTTTCTGATGCAGTACTTCAGTATGGTGAAGTTAGTTTGAGAAACTTTGTTTTGGGGGAGCTTTTACGCGCAAGAGTCTCCAGCTCTCCAGAAGATCTCCGCATGTCCTTGGTGAATTATATCTAGCTGCTTCTCTCAACTGTGTTTTTATCACAAAAATAAAAAAAGATGTTTTCCTACGAGATGTTCATCTGCGTCCTGGCCATCGCCTGTCTTCTGGAGATCCCCCGAGGCACCGCGGCCGCGTCCTGCGAGCCCATCCGTATCCCCATGTGCAGGTCCATGCCGTGGAACATGACCAAGATGCCCAACCACCTCCATCACAGCACACAGGCCAACGCCGTGCTCGCCATCGAGCAGTTCGAGGGGCTCCTGGGCACCCAGTGCAGCCCGGACCTACTGTTCTTCCTGTGCGCCATGTACGCGCCCATATGCACCATCGACTTCCAGCACGACCCCATTAAACCCTGCAAGTCCGTGTGTGAGCGGGCCAAGTGCGGCTGCGAGCCGGTCATGAAGAAGTACAACCATACGTGGCCGGAGAGTCTGGCCTGCGAGGAGCTTCCCGTGTACGACCGAGGAGTCTGCATCTCACCTGAGGCCATAGTCAAGGCAGATGGGCCAGATCGGTGCAAATGCAAGTCTGTGAGACTTGCTCAAAAGACATATTCAAAGAACAATTACAATTATGTCATCCGGGCAAGAGTGAAAGAGATAAAGACTAGAAATCATGACCTGAGCGCCATTGTCGAGGTCAAAGACGTTCTGAAGTCTTCTCTGGTCAACATCCCTCGAGACATCGTCACTCTGTATTACAGCTCTGGGTGTCTGTGTCCTCCACTAATAGCCAATGAGGAATACATCATCATGGGTTATGAAAACGAGGAAAGGTCCAGACTGCTGCTCATTGATGGATCCATTGCACAGAAGTGGAAAGACAAAATGGGACGGAAAGTGAAGCGCTGGGACCAGATTTTGCAGAGCAGAGCAAATTCAGGCAGGAGCAACACGAAACGGAACCGCCACTAACTGTCCTTGGAAAAACCACACGGACAACCCAAGGAGGAGAAGAGGTTCA

Function

symbol description
frzb Predicted to enable Wnt-protein binding activity. Acts upstream of or within chondrocyte proliferation. Predicted to be located in extracellular region. Predicted to be active in cytoplasm and extracellular space. Is expressed in several structures, including germ ring; head; hypochord; mesoderm; and nervous system. Human ortholog(s) of this gene implicated in lung non-small cell carcinoma and osteoarthritis. Orthologous to human FRZB (frizzled related protein).

GO:

id name namespace
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000009_13942733_13946356.mRNA True 1107 mRNA 0.51 5 13942521 13946405

Neighbor

gene id symbol gene type direction distance location
CI01000009_13884165_13939556 NCKAP1 coding upstream 2833 13883847 ~ 13939688 (+)
CI01000009_13811227_13837798 NA coding upstream 104126 13811076 ~ 13838395 (+)
CI01000009_13798741_13799037 NA coding upstream 143330 13796884 ~ 13799191 (+)
CI01000009_13752424_13753460 NA coding upstream 188698 13752424 ~ 13753823 (+)
CI01000009_13696525_13718933 SSFA2 coding upstream 223588 13696525 ~ 13718933 (+)
CI01000009_14007631_14010487 NA coding downstream 60682 14007087 ~ 14010693 (+)
CI01000009_14033666_14036472 RETSATL coding downstream 87261 14033559 ~ 14036472 (+)
CI01000009_14039505_14043545 RETSATL coding downstream 92804 14039209 ~ 14043609 (+)
CI01000009_14095330_14128580 NA coding downstream 147240 14093645 ~ 14128582 (+)
CI01000009_14170062_14192930 NA coding downstream 222816 14169221 ~ 14193332 (+)
G58310 NA non-coding upstream 106642 13833541 ~ 13835879 (+)
G58301 NA non-coding upstream 193698 13745821 ~ 13748823 (+)
G58307 NA non-coding upstream 296125 13637284 ~ 13646396 (+)
G58252 NA non-coding upstream 357265 13523613 ~ 13585256 (+)
G58205 NA non-coding upstream 556324 13385986 ~ 13386197 (+)
G58389 NA non-coding downstream 28983 13975388 ~ 13978604 (+)
G58388 NA non-coding downstream 50420 13996825 ~ 14004082 (+)
G58384 NA non-coding downstream 65500 14011905 ~ 14018473 (+)
G58421 NA non-coding downstream 104572 14050977 ~ 14051404 (+)
G58467 NA non-coding downstream 151086 14097491 ~ 14097703 (+)
G58028 NA other upstream 798913 13140378 ~ 13143608 (+)
G57701 NA other upstream 919383 13006643 ~ 13023138 (+)
G57691 NA other upstream 1024056 12906444 ~ 12918465 (+)
G57682 NA other upstream 1050182 12825469 ~ 12892339 (+)
CI01000009_12432736_12435509 NA other upstream 1506504 12432538 ~ 12436017 (+)
G58382 NA other downstream 87154 14039757 ~ 14039901 (+)
G58455 NA other downstream 300290 14246695 ~ 14258526 (+)
G58558 NA other downstream 550531 14496936 ~ 14501514 (+)
G58649 NA other downstream 703319 14649724 ~ 14652022 (+)
G58711 NA other downstream 820254 14766659 ~ 14773773 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_037396 frzb coding NC_007120.7 CM002893.2 44832032 ~ 44839148 (+)
bowfin (Amia calva) AMCG00001071 frzb,LOC106582261,LOC106586471 coding CM030137.1 CM030137.1 13797604 ~ 13802479 (-)