CI01000009_14595691_14611767


Basic Information

Item Value
gene id CI01000009_14595691_14611767
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 14595436 ~ 14612569 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000009_14595691_14611767.mRNA
ATTTATAATCCTGCCTTGGTGTGTGTGTGAAACTGTCCAGCTGCAAACTCACAGAGCAGCGAGATAGATATAACAGCGTTTCATTAGAATAAAACACGTGAGGTCAGAGTCTCCATCTGTTTTATACGCCAACGTTAATAGTGCTCCCTTCAAACTTGAAAAGAAACATTGGTGTAATGACGTGAAGCCAGAGACATTTACTTAAGCCCATTCAGAGCAGACCTAGAATGAATGGCTGATAGGGTAAAATAAAATATGAGCAAAATCAATCAAGCAAACATCACCTTACAAATCGCAAGCCTAAGAGAAAAGCAGCTCTATGTACATGCGAACTGGCCCGACTGGACAAGTGACTGTTTTTTCCAAAGACCTAAACACACTAGCCCTGAGGAGCATCAGAAATTAACTTCTGTCAACTCTCCGAGTGTTTGGCATGCTCTGACCTGGACACGGGTGCCAAGACGGGCGGACGGGGTGCCACATTCAGAGGGCCAGGCAGGAGGCATGATGACCATCTGTGAGGGCTGGCACCTGGACCAGGCAGCACTCTCCCTCCAAAAACTCATGTACTGTACACGGGATTGCGCAGGGATGTTGGGAAAGCAGCTAGGCTCCGCCCTCGGCCCATCCCGCCCTCTTGGCTTTAACGAAACACATGGACTGGCTGGGAATGTTATGTTTCAAAAACAGCAAGCACGCCTTGTCCACGCGGACACATTAAACATACGGTATAAAGTACCACCGGTCCCTGCTCAGAGAGCATGTTTACAATCAATACTAATTCAGCATGGAGGGGGAACAGGGGAAGAGAGACGGATAGAGAGGGAGAGTGAAAGAGTGGAAAGGCGCCGTTGGCAGTGAGCAGGTCTCCAGGCGAGACTTTCAGCACCATCTGTTTCCTGCTCCTCAGTTCCAGTCTTAAACCCAGTCTTACACAAGTCTAAACCCAGCTGAACCAGCTTAGACAGGGTCTAAACCTGCACCCCTTTAAACAGGTTATCAAGACAAACAAATCCCACACAAAACCCCTTCAAGTCCAGTTTAGTCTCAGCAGATTTAACATCATCTTCCCCTCCTTCCTTTCTTACATTTTTTGCCTTCATTCTTCCTTTTCAACCTTTCTTTCCTTCCACATGGCCTGTTTCCTTCCTTCCTTTTTTCTATTTCCTTTGTTTTTCTCATTCCTACCCCGCCTCCCTTTCTGTCATTTCTTAGAATTCTTCAATCCTTCATCATTCCCTTCTTCTTTCTTTGTTTTCTTTTTTTCATCTTGCATACTTTCTTCCTTCCTTTCCTTCTTGTTAAAAAGGATCTACTATAAAGGTCCCAAGAGAAAACCTACACAACCAGCTATACTTTTCAGAAATGGGAAAAAAGCCATTTCTATTGCATAATTGTGTGTGTTCTACATAAACCCATTAATAAGCACCAGTGTAGTACCAGAGTCCTCAAACTACAGCGGTCTGCGTGTGGCTCTCCAACATGTGTGAGTGTCTGTACACAGATGCCATGGTCTGTCTCTTTTAGCAGGAGCAGAGGGTAACCACATCGGGCTAACCAATGTGTTTGTGGCTAGCCAGCAATCCACTGCTATTCCAGCTCCAAGAGGAGAGAGTGTACACACACATTCACGTATATGTGTTACAAAAACAAATATATAGAA
>TU66769
CACACATACTGTACATATATACATAAATAACACCATGAATTTGGAGCGACAAGATTTTGGACATTCCACCCAGCACTACTTCATGAGTCAATTGATCCTCTTTCGATAATAAATAGTCTAAACTTGTGTCAGCAAAAGAGTTTTGGTCAAATGCATTTTTTGGTGTTGAATCAGCAGAGAGTGAGAAATCGCTATGCAATATGGGTTTCATAGTAAGCACTAAAACTTGTGCTGAATTGTTGTAGGATTGCGCAGGGATGTTGGGAAAGCAGCTAGGCTCCGCCCTCGGCCCATCCCGCCCTCTTGGCTTTAACGGTGAGTATCAGTTCGCTTTACTGACCTGGCTGGACTCCATCAATTCTGGAGCTCAGCCAGTCCTGGAGAGAGAAAAAGGAAGAGAGGGATAGAGAGAGGTGGAGCAGCGCAATGACCCTTTTCTTCAGAGAGAAGTGGACAGGGAAGGACAGTGAGAGAAAGTGAAAGAGAAATGCACCGTAAGCCGAAAGAATCTTTCAGCCACACAAAGAAATTGTCCTTATAGTGGAGACAAGGTGACCGTGAAAGCTCTATAACTCTTAAAAACATGCCACTATATCAGTATGCAGATTATATTAGTGCTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000009_14595691_14611767.mRNA False 1663 mRNA 0.45 5 14595436 14612569
TU66769 True 620 lncRNA 0.43 1 14606158 14606777

Neighbor

gene id symbol gene type direction distance location
CI01000009_14581261_14582899 NA coding upstream 12442 14580880 ~ 14582994 (+)
CI01000009_14474300_14474593 NA coding upstream 120666 14471796 ~ 14474770 (+)
CI01000009_14432830_14450364 TWIST1.L, TWIST1, TWIST2, TWIST1B, TWIST1.S coding upstream 143894 14432716 ~ 14451542 (+)
CI01000009_14380226_14386430 ASB1 coding upstream 208570 14380226 ~ 14386866 (+)
CI01000009_14348389_14374515 TRAF3IP1 coding upstream 219753 14348389 ~ 14375683 (+)
CI01000009_14616605_14620028 NA coding downstream 2802 14615371 ~ 14620238 (+)
CI01000009_14659692_14664324 NA coding downstream 46610 14659179 ~ 14664333 (+)
CI01000009_14682045_14685381 NA coding downstream 69085 14681654 ~ 14685420 (+)
CI01000009_14857765_14859526 NA coding downstream 245144 14857713 ~ 14859636 (+)
CI01000009_14862429_14898325 SLC4A3 coding downstream 249163 14861732 ~ 14898549 (+)
G58620 NA non-coding upstream 2550 14592653 ~ 14592886 (+)
G58619 NA non-coding upstream 4758 14590301 ~ 14590678 (+)
G58618 NA non-coding upstream 5280 14589691 ~ 14590156 (+)
G58616 NA non-coding upstream 8850 14586121 ~ 14586586 (+)
G58615 NA non-coding upstream 9526 14585690 ~ 14585910 (+)
G58676 NA non-coding downstream 91910 14704479 ~ 14710140 (+)
G58686 NA non-coding downstream 108319 14720888 ~ 14721094 (+)
G58713 NA non-coding downstream 151253 14763822 ~ 14764679 (+)
G58695 NA non-coding downstream 163368 14775937 ~ 14777316 (+)
G58735 NA non-coding downstream 200447 14813016 ~ 14813280 (+)
G58558 NA other upstream 93922 14496936 ~ 14501514 (+)
G58455 NA other upstream 336910 14246695 ~ 14258526 (+)
G58382 NA other upstream 555535 14039757 ~ 14039901 (+)
G58028 NA other upstream 1451828 13140378 ~ 13143608 (+)
G57701 NA other upstream 1572298 13006643 ~ 13023138 (+)
G58649 NA other downstream 37155 14649724 ~ 14652022 (+)
G58711 NA other downstream 154090 14766659 ~ 14773773 (+)
CI01000009_14925314_14952223 NA other downstream 312660 14924621 ~ 14952571 (+)
G60028 NA other downstream 739478 15352047 ~ 15376169 (+)
G58623 NA non-coding upstream 7676 14598267 ~ 14598482 (+)
G58622 NA non-coding upstream 8256 14597589 ~ 14597902 (+)
G58621 NA non-coding upstream 8747 14597085 ~ 14597411 (+)
G58630 NA non-coding downstream 309 14607086 ~ 14608066 (+)
G58631 NA non-coding downstream 2229 14609006 ~ 14609341 (+)
G58572 NA non-coding downstream 4125 14610902 ~ 14676373 (+)

Expression


Co-expression Network