XLOC_007353


Basic Information

Item Value
gene id XLOC_007353
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007125.7
NCBI id CM002898.2
chromosome length 52660232
location 30454100 ~ 30455836 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00016235
AAACTACTTCACTTATGACAACTTGTAATATGTAAACAGATGGTCTTCAGCTCCAGATAAAAGCTAATGAAATAAACATCTAAAAGAGTCTACAGTGTATTCTGTGGGAAAGACTAGAGCTTGTCACAGTTTTCACAGAAGTCAATATTATATTGTAGTAGAAGATCAAATGCTTGTTATTTCAGTCTTGAATGTGAATGAAATTAGAAGAATAAAATATGTAACATTTCATTAGAACATCTGCCTGCTTGAGTTTGTGAGCTGGAGAGAGGGATCTATATGTGTAGCGCATTGTGAGATTACTGAGGTCTCATTATTGCTCTGTGCACTCAGCACTGTCAGAGCCGCTGTAAGCTGATCCGCTGCTGGACACTGGACAAACTCACACAAACTATGTTAGCAATGTGCTCGTTGTAACCAAAGATTATCTGGCTTATAACTCCTAGAGTAGCAAATACAACAATACAATGCCAATACAGCAATAAAGGGGCATCAAAACCCCAAAAGAACGTTTTCCTTACacaaaatagattaataaatagaaataaataactgTACACACCATTATCCGTTTCACACTTGAGTTAGTTTGTTTAAAGCAAGACGCTGCAGGTGTACATTAGGGTAAAAACTTAACTAATAGGTATTACCATGATTACAAGTATTtttctactttaaaaaaataacgtTTTGTATTAAAAGctttctaaaatgtttaaatatgcaaatgagggatCATTTGTGTGCTAGTTTGTATACAAAAATCCTGAAAACACTGAATGTTCAGTGGTTCAGGTGCAAAATTGGCATTTGTCTTGTGTTTTTGCCATGTTAGTCCAATGTTTTATCACTTTAAATACTGGGAACatgttagaaataaa

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00016235 True 881 lncRNA 0.34 2 30454100 30455836

Neighbor

gene id symbol gene type direction distance location
XLOC_007352 cnot7 coding upstream 28116 30413312 ~ 30425984 (+)
XLOC_007351 mtmr7a coding upstream 41959 30398546 ~ 30412141 (+)
XLOC_007350 mtus1a coding upstream 96459 30285613 ~ 30357641 (+)
XLOC_007349 fgl1 coding upstream 170203 30279391 ~ 30283897 (+)
XLOC_007348 asah1a coding upstream 175692 30272891 ~ 30278408 (+)
XLOC_007354 fgf20b coding downstream 36054 30491890 ~ 30493751 (+)
XLOC_007355 her5 coding downstream 87172 30543008 ~ 30544666 (+)
XLOC_007356 mrpl11 coding downstream 101525 30557361 ~ 30620537 (+)
XLOC_007357 NA coding downstream 169510 30625346 ~ 30627451 (+)
XLOC_007358 ccdc85b coding downstream 274913 30730749 ~ 30734935 (+)
XLOC_007347 NA non-coding upstream 210973 30079114 ~ 30243127 (+)
XLOC_007342 NA non-coding upstream 1543813 28857949 ~ 28910287 (+)
XLOC_007341 NA non-coding upstream 1793131 28567564 ~ 28660969 (+)
XLOC_007336 NA non-coding upstream 2009120 28444739 ~ 28444980 (+)
XLOC_007332 NA non-coding upstream 2372028 28081081 ~ 28082072 (+)
XLOC_007359 CR626869.1 non-coding downstream 285152 30740988 ~ 30741116 (+)
XLOC_007365 NA non-coding downstream 633141 31088977 ~ 31092543 (+)
XLOC_007370 BX511227.3 non-coding downstream 1077247 31533083 ~ 31533220 (+)
XLOC_007371 BX511227.2 non-coding downstream 1084607 31540443 ~ 31540598 (+)

Expression


Co-expression Network