CI01000009_15726357_15736168 (PHGDH)


Basic Information

Item Value
gene id CI01000009_15726357_15736168
gene name PHGDH
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 15726145 ~ 15736168 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000009_15726357_15736168.mRNA
ATGGCTCCGGTATCAGTCAAACGCCTTTTAATCAGTGAAAGTGTTGATCCGTGCTGCAAAATTATTTTGCAAGAGAATGGCATTGAAGTGACGGAGAAACAGCAGATGACTAAAGAAGAGTTGATTGCAGAGATTCAGAATTATGATGGTTTAGTTGTCCGATCAGCAACCAAAGTTACTGCTGATGTCATCAATGCTGGCAGTAACTTGAAGATCATTGGACGAGCCGGAACAGGAGTTGACAACGTGGATGTGGATGCAGCAACCAAGAGAGGAATCATTGTCATGAACACTCCGAGTGGAAACACAATCAGTGCTGCTGAGCTCACCTGTGCTCTTTTGATGAGCTTGTCAAGATGGCTGAGTGCTTTGATAATGATTTTGCAGTTCATGGGTGCAGAGCTGTATGGAAAAGTTCTTGGAATTGTAGGGCTTGGAAGAATCGGCAAAGAGGTGGCAAAAAGAATGCAGTCGTTTGGGATGAAGACCATTGGTTATGACCCCATCACCCCTCCGGAGGTTTCTGCGGGCTGGGGTGTGGAGCAAATGTCTTTGGAGCAGCTGTGGCCACAGTGTGATTATATCACAGTTCACACTCCACTCATGCCCTCCACCACAGGTCTCCTCAATGACGCCTCATTTGCTAAGTGTAAGAAGGGTGTGAAGGTGGTGAACTGTGCTCGTGGTGGCATCATCGATGAAGCTGCCCTCCTCCGGGCTCTGGAGTCGGGGCAGTGTGGAGGAGCGGGACTGGATGTGTTTGTGGAGGAGCCTCCAAAGGACCGGGCACTGGTGAACCACCCCAATGTTATCAGCTGTCCTCATCTGGGAGCCAGCACTAAAGAAGCACAGGCTCGGTGTGGGAAGGATATCGCCCTGCAGATTGTGGACATGGTTACAGGCAATGCATTAGTGGGAGCTTGGATTCGGCTGGGAGAGTCCATGGGCAGAGTGTTGAAGGCCTGCAGCACTTCTAAAGAACCCTACAGCCAGGTCCATGTCACAGCACTTGGGGAGTCCTTGAAGAAGTCCACAGGGTTTTTGAGCTCAGCAGCTGTGGTTGGTTTACTCACTGAAGGTCCTCAGAATGGCCCCAACTTGGTGAATGCACTGCCTCTAGCTGCAGAGACGGGAATTACTGTGAAGATGGATCACAATGACTCAAATGGCCGTGAGGCGTGTGTTGTGGAGGTCTCTGTGAACGGCAGTAGCTATAAGGCTGTTGGCTCAGTGCAGACTGGAGTTCCTGTGCTGTTGGAGCTGAACGGAAGTGTGTTTCGACAGCCTATTCCTCTCAGCGGACACCTGCTGTTCTTCAAGGCCGCCACCTCCACTGATCTCCTGCTCTCCGTAACTGGGGTTTTGGCAGCTGCAGGTGTGGAGCTGGAGTCCTTCAGTGCCTCTACTGCCAGCAGTGGTGACCAGTGGTACTGCATGGGGATTTCTTCACTGCTGGGGGACATTGGTGCCTTTAAGTCCTTAGTGAAAGAGGCTGCACAGCTCACTGTTTAAATATCTGTCGCTGAGCCTGATCTGAACCACTTAACATTCCAGCATTTAAAGCTCTAGCCTTACTGAGTTCCATTACTTACTGTTACTCACATTGATCACAACTCTACAATTCCTAAAACAACAGTGTGAAAACAGTCAGATGTTTACTTTTTTGTTGGTATTAGTTTACTAAACCTAATATGTATTGCAGATATGTAATGTGTTTGATTAAA

Function

symbol description
phgdh Predicted to enable phosphoglycerate dehydrogenase activity. Predicted to act upstream of or within L-serine biosynthetic process. Human ortholog(s) of this gene implicated in Neu-Laxova syndrome 1; PHGDH deficiency; and amino acid metabolic disorder. Orthologous to human PHGDH (phosphoglycerate dehydrogenase).

GO:

id name namespace
GO:0008652 cellular amino acid biosynthetic process biological_process

KEGG:

id description
K00058 serA, PHGDH; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000009_15726357_15736168.mRNA True 1724 mRNA 0.49 11 15726145 15736168

Neighbor

gene id symbol gene type direction distance location
CI01000009_15716557_15721525 KLHL23 coding downstream 4549 15716477 ~ 15721596 (-)
CI01000009_15693066_15694538 UGT5B4, UGT5B6 coding downstream 31516 15692994 ~ 15694629 (-)
CI01000009_15654061_15662554 ARPC2 coding downstream 63119 15653760 ~ 15663026 (-)
CI01000009_15504401_15585060 NA coding downstream 140316 15503406 ~ 15585829 (-)
CI01000009_15483720_15484321 NA coding downstream 241824 15483709 ~ 15484321 (-)
CI01000009_15784118_15789896 KLHL41, KLHL41A coding upstream 47912 15784080 ~ 15789896 (-)
CI01000009_15791178_15798430 BBS5.L, BBS5 coding upstream 54681 15790849 ~ 15798430 (-)
CI01000009_15802365_15836680 COL28A1A coding upstream 66180 15802348 ~ 15836684 (-)
CI01000009_15847186_15853675 CCDC89 coding upstream 110750 15846918 ~ 15853675 (-)
CI01000009_15975897_15978506 RDH1 coding upstream 239562 15975730 ~ 15978506 (-)
G60469 NA non-coding downstream 6984 15718562 ~ 15719161 (-)
G60468 NA non-coding downstream 13998 15708004 ~ 15712147 (-)
G60442 NA non-coding downstream 76768 15589657 ~ 15649377 (-)
G60439 NA non-coding downstream 176266 15549582 ~ 15549879 (-)
G60376 NA non-coding upstream 9300 15745468 ~ 15746486 (-)
G60472 NA non-coding upstream 14530 15750698 ~ 15750994 (-)
G60367 NA non-coding upstream 45131 15781299 ~ 15798959 (-)
G60479 NA non-coding upstream 66719 15802887 ~ 15803791 (-)
CI01000009_15318811_15390382 TNS1 other downstream 283098 15318811 ~ 15390382 (-)
G59941 NA other downstream 593642 15132104 ~ 15132503 (-)
G59811 NA other downstream 838681 14862397 ~ 14887464 (-)
G59490 NA other downstream 1688272 14033564 ~ 14037873 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_038129 phgdh coding NC_007120.7 CM002893.2 48185936 ~ 48214216 (-)