XLOC_007356 (mrpl11)


Basic Information

Item Value
gene id XLOC_007356
gene name mrpl11
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007125.7
NCBI id CM002898.2
chromosome length 52660232
location 30557361 ~ 30620537 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00014493
TGTGGTGTCAGTCTATCCTCTTCCTCCAAGCCCTCTGTAGTGACAGTCAAGGCAATATGGCAGCGCGCATGGTTCAAATTCTAACGTGAAGGTCTTTTTTCGGGTGTGCGCGACCACATAGAATCACAACAGCAGGGAAAGGGGACGGACAGACGTGCGGCAGGCCAGACACAGAGACAATATGTCTAAGATATCTAAAGCAGCAAAGGCGGTGAAAAAGTTGGATACTGGAGGACTGATCAGAGCGATTGTACGGTCCGGACAGGCGGCTCCCGGGCCTCCGCTGGGCCCCATCCTGGGACAGAAAGGGATTCCCATCGGAGCCTTCTGCAAAGACTTCAATGAGAGAACCAAAGACCTCAAAGAAGGCATTCCTCTTCCCGTCAAGATCAATGTGAAGCCGGACCGGACGTATGACCTGAAAATTGGGCAGCCCACTGTGTCTTACTTCTTGAAACAGGCTGCCGGCATTGAGAAAGGAGCTGGAAAGACTGGGCATGAGATCGCGGGGATGGTGACTGTGAGGGCCGTATATGAGATTGCACGGGTCAAATCGCAGGATGAGTGCTTTAAGCTGCGGGACACCACCATGCAGAACGTGGTCAAGAGCATCATCGGTTCAGCCAGATCCCTCGGCATACAAGTAGTGAACGACCTGTCACCAGAGGAGTACGGCGAGTTTCTCCGAGAGCGTGAAGTGATACTGAAGGCTCAAGCAGAAGCAGCCGCAgctgaagcagcagcagcagcagcagcagtcaagAAGAAATGAAGAGCTACTCTGTGCTCCACTTATTtatcattgcaaaaaaaaaaaaaaagacatctgtTCACATGGATTCCCCCTGCTATTCTGGTTGTGTTTTTCTAATAAAATGCTGCTGATTTGCATGCAGA
>TCONS_00014494
GGAAAGGGGACGGACAGACGTGCGGCAGGCCAGACACAGAGACAATATGTCTAAGATATCTAAAGCAGCAAAGGCGGTGAAAAAGTTGGATACTGGAGGACTGATCAGAGCGATTGTACGGTCCGGACAGGCGGCTCCCGGGCCTCCGCTGGGCCCCATCCTGGGACAGAAAGGGATTCCCATCGGAGCCTTCTGCAAAGACTTCAATGAGAGAACCAAAGACCTCAAAGAAGGCATTCCTCTTCCCGTCAAGATCAATGTGAAGCCGGACCGGACGTATGACCTGAAAATTGGGCAGCCCACTGTGTCTTACTTCTTGAAACAGGCTGCCGGCATTGAGAAAGGAGCTGGAAAGACTGGGCATGAGATCGCGGGGATGGTGACTGTGAGGGCCGTATATGAGATTGCACGGGTCAAATCGCAGGATGAGTGCTTTAAGCTGCGGGACACCACCATGCAGAACGTGGTCAAGAGCATCATCGGTTCAGCCAGATCCCTCGGCATACAAGTAGTGAACGACCTGTCACCAGAGGAGTACGGCGAGTTTCTCCGAGAGCGTGAAGTGATACTGAAGGCTCAAGCAGAAGCAGCCGCAgctgaagcagcagcagcagcagcagcagtcaagAAGAAATGAAGAGCTACTCTGTGCTCCACTTATTtatcattgcaaaaaaaaaaaaaaagacatctgtTCACATGGATTCCCCCTGCTATTCTGGTTGTGTTTTTCTAATAAAATGCTGCTGATTTGCATGCAGACTTATTGAAGTGTATTCTTTTATTGCTGTTTACCACTTTTTTTTCCACCTGCTCTTTCGCACACTTCCATTGACTCCTGCAACTCTGAGTAATAATCCAGTTTTTTATATAACCGCTGTGACTTTAATATCTGTGCTGAAGTAGATTGCCCTTTAGCAACCCAGTAACGACAAATTCAGGTTGGTGT
>TCONS_00014495
ATAGTTGCTTCTCTCGGATTTCACTTCAGATCGCAGGCGGGCAGATTTGAATGGGCTCGTGCATATTGTATGGGAGTCACCATCCGGATGGGTCCCTGCTACTAATTACTGCTGCTAGTGCAATCACTGCTGCGATAATTACATCGCTCTGTTCTGGAGAAAACAACACCCCCGATGTCCCTGCTGTTGGTGACGAATTGATTGTGTGAAAGGGATTCCCATCGGAGCCTTCTGCAAAGACTTCAATGAGAGAACCAAAGACCTCAAAGAAGGCATTCCTCTTCCCGTCAAGATCAATGTGAAGCCGGACCGGACGTATGACCTGAAAATTGGGCAGCCCACTGTGTCTTACTTCTTGAAACAGGCTGCCGGCATTGAGAAAGGAGCTGGAAAGACTGGGCATGAGATCGCGGGGATGGTGACTGTGAGGGCCGTATATGAGATTGCACGGGTCAAATCGCAGGATGAGTGCTTTAAGCTGCGGGACACCACCATGCAGAACGTGGTCAAGAGCATCATCGGTTCAGCCAGATCCCTCGGCATACAAGTAGTGAACGACCTGTCACCAGAGGAGTACGGCGAGTTTCTCCGAGAGCGTGAAGTGATACTGAAGGCTCAAGCAGAAGCAGCCGCAgctgaagcagcagcagcagcagcagcagtcaagAAGAAATGAAGAGCTACTCTGTGCTCCACTTATTtatcatt
>TCONS_00014496
caGAAAGGGATTCCCATCGGAGCCTTCTGCAAAGACTTCAATGAGAGAACCAAAGACCTCAAAGAAGGCATTCCTCTTCCCGTCAAGATCAATGTGAAGCCGGACCGGACGTATGACCTGAAAATTGGGCAGCCCACTGTGTCTTACTTCTTGAAACAGGCTGCCGGCATTGAGAAAGGAGCTGGAAAGACTGGTAAGCAGGCCatacatgcatccatccatccattcatcttcaGTCTCTCAGCAGTCTATTTATACACCTCGCCACTGCCTTATGTTTCAATAATGGACAGTCTTCCCCCTGCGGTGTGTTTTGGTtcagattgaatttttttgacTGATCTTATATTGATGATGAGCTGTGCTGGTAAAGAGCTGTGCAATTACTAAGGGGAAGCTGCAGAGAAGGTGGCGTTTTAACAAAAAAGAGAATTCTGGATTTGCTTCATACCTCAATTATTCTTTCTCATGTGCCTACTCCTTTTTCATTTGTAACCTCTCACCTTCACTCCATCTCCACTTCCGTTTTTTGCTCAATCACGAC

Function

symbol description
mrpl11 Predicted to enable large ribosomal subunit rRNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in translation. Predicted to be located in ribosome. Predicted to be part of mitochondrial large ribosomal subunit. Orthologous to human MRPL11 (mitochondrial ribosomal protein L11).

GO:

id name namespace
GO:0000027 ribosomal large subunit assembly biological_process
GO:0006412 translation biological_process
GO:0005762 mitochondrial large ribosomal subunit cellular_component
GO:0005840 ribosome cellular_component
GO:0015934 large ribosomal subunit cellular_component
GO:0019843 rRNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function
GO:0070180 large ribosomal subunit rRNA binding molecular_function

KEGG:

id description
ko03010 Ribosome
ko03011 Ribosome

ZFIN:

id description
ZDB-GENE-040718-294 Predicted to enable large ribosomal subunit rRNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in translation. Predicted to be located in ribosome. Predicted to be part of mitochondrial large ribosomal subunit. Orthologous to human MRPL11 (mitochondrial ribosomal protein L11).

Ensembl:

ensembl_id ENSDARG00000013075

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00014493 False 897 mRNA 0.51 6 30557361 30620350
TCONS_00014494 False 949 mRNA 0.48 5 30568961 30620537
TCONS_00014495 False 708 processed_transcript 0.51 5 30587967 30620257
TCONS_00014496 True 544 lncRNA 0.44 2 30604891 30613907

Neighbor

gene id symbol gene type direction distance location
XLOC_007355 her5 coding upstream 12695 30543008 ~ 30544666 (+)
XLOC_007354 fgf20b coding upstream 63610 30491890 ~ 30493751 (+)
XLOC_007353 NA coding upstream 101525 30454100 ~ 30455836 (+)
XLOC_007352 cnot7 coding upstream 131377 30413312 ~ 30425984 (+)
XLOC_007351 mtmr7a coding upstream 145220 30398546 ~ 30412141 (+)
XLOC_007357 NA coding downstream 4809 30625346 ~ 30627451 (+)
XLOC_007358 ccdc85b coding downstream 110212 30730749 ~ 30734935 (+)
XLOC_007359 CR626869.1 coding downstream 120451 30740988 ~ 30741116 (+)
XLOC_007360 yif1a coding downstream 133129 30753666 ~ 30759503 (+)
XLOC_007361 si:ch211-145o7.3 coding downstream 141594 30762131 ~ 30770940 (+)
XLOC_007347 NA non-coding upstream 314234 30079114 ~ 30243127 (+)
XLOC_007342 NA non-coding upstream 1647074 28857949 ~ 28910287 (+)
XLOC_007341 NA non-coding upstream 1896392 28567564 ~ 28660969 (+)
XLOC_007336 NA non-coding upstream 2112381 28444739 ~ 28444980 (+)
XLOC_007365 NA non-coding downstream 468440 31088977 ~ 31092543 (+)
XLOC_007370 BX511227.3 non-coding downstream 912546 31533083 ~ 31533220 (+)
XLOC_007371 BX511227.2 non-coding downstream 919906 31540443 ~ 31540598 (+)

Expression


Co-expression Network