G35744 (mrpl38)


Basic Information

Item Value
gene id G35744
gene name mrpl38
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 10471380 ~ 10475783 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU48089
CTTGAGTGGGAGATAAATGATTGCCGTAATGCACCAGAGCACTACCATCACCTTCATATCCCACTCTCAGCATGACCCTCGGAACAAAGTAGGCCATAGGAAAGAGGTCCCGGTAGATTCCGTAATGCTCCGCCAGCCTCTGGATGTGATAAGGTCCGTTAGTTTTCTCCCACTCTGTCTTTACTTTGTCCAACGAAATGcgaaAGGAGCGAAGACGAGTGGCTCTCTCCAGCTCAGGGTTCTTCCGGTTTTCTCTCATCACCTTCCTCCTTTCCCGAGCTTCCTTTACCCTCGAGGGCCGACAGTAAGGAAGCCCGATGTCCACCAGCCCAAACtCTGGGTCTGGCTGCTGGTCCACATACTGTCTGTAGGTTTTCCACCACACCTCTTTATTTCTGGCCTTCTCCGCCGCAGTGATGTAGCGCGTGTAGCTGCGGTATTTCTCCAGAGCCTCCAGGTTCTGCCAGTCTATATCTTCATTTGGCATCGGTCCCAGCGGGGCAGTCCGGCGACAGGATACGGCT
>TU48092
CTTGAGTGGGAGATAAATGATTGCCGTAATGCACCAGAGCACTACCATCACCTTCATATCCCACTCTCAGCATGACCCTCGGAACAAAGTAGGCCATAGGAAAGAGGTCCCGGTAGATTCCGTAATGCTCCGCCAGCCTCTGGATGTGATAAGGTCCGTTAGTTTTCTCCCACTCTGTCTTTACTTTGTCCAACGAAATGcgaaAGGAGCGAAGACGAGTGGCTCTCTCCAGCTCAGGGTTCTTCCGGTTTTCTCTCATCACCTTCCTCCTTTCCCGAGCTTCCTTTACCCTCGAGGGCCGACAGTAAGGAAGCCCGATGTCCACCAGCCCAAACtCTGGGTCTGGCTGCTGGTCCACATACTGTCTGTAGGTTTTCCACCACACCTCTTTATTTCTGGCCTTCTCCGCCGCAGTGATGTAGCGCGTGTAGCTGCGGTATTTCTCCAGAGCCTCCAGGTTCTGCCAGTCTATATCTTCATTTGGCATCGGTCCCAGCGGGGCAGTCCGGCGACAGGATACGGCTGCTGTTCTGAACAGTCTGGCGCAGCTTTTGAGTCCCG
>TU48093
GTGTATTTTCAAGCAGAGAACAGTCCAGAGCACAGCCAAATAGAATTTTTATGACAGTGACTATATTAAAAATCACCATTATGCAGTATCTGGCTGAAGGGATGTTTCATTTAGCAAGTGGAAAAAGCTGCATTTAAGTAAATGCTTCAAAAGTCGGTGCTGCAGTAAGTGATGTGTTGATGATGTAAAGCTCACCAGGGAGATGGTCTGACATCACTACTAAAGTCCACATGAACATCCTGTTTGAAAAGGATGAAGACATATCTTTGGAAGCCGGTGCCTTTAGCAGGGAACGGAGCGATGTACGGGCAAATTTCCTGCCCGGAGAGAACGGCACCACCAGGGATATTCCCAACCAGCCAGTGAACGTACTCCTGCTCCCCATCGTGTAAATGCTCATCTGGGCTTGTTAGAAGCAAAGTCCAGAGAGAATCTTCTTCTGCCTCAAAGCTAATGTGAGGTGCTACTGATGCTTGAGTGGGAGATAAATGATTGCCGTAATGCACCAGAGCACTACCATCACCTTCATATCCCACTCTCAGCATGACCCTCGGAACAAAGTAGGCCATAGGAAAGAGGTCCCGGTAGATTCCGTAATGCTCCGCCAGCCTCTGGATGTGATAAGGTCCGTTAGTTTTCTCCCACTCTGTCTTTACTTTGTCCAACGAAATGcgaac
>TU48095
ATGATGGCCTGCTTTTCTTAATGGCTTTGTCTGATGATGCTCCGCCTCTTAAAATCAGCTGGGCAAAATGTCTGACTGTTAGACAGGAATCTCTGAAACATTCAGTGACctctcaccaggaggaacaCTACACAAAAGCAGGGCAGCAGGAGAGAACCCAGTATCTACTCAGACCACACTAATCATCACGTCTAATCATTAACACAGCTGCTGGAGAAAGAGAAGTAAATGCTGAATTTTGGAGCAACCTCAGTGCATTATTCCATTATGTCCATTCacatcacattcacattcacacacacatcacactagTTTCTGTACCTGGGCTTGTTAGAAGCAAAGTCCAGAGAGAATCTTCTTCTGCCTCAAAGCTAATGTGAGGTGCTACTGATGCTTGAGTGGGAGATAAATGATTGCCGTAATGCACCAGAGCACTACCATCACCTTCATATCCCACTCTCAGCATGACCCTCGGAACAAAGTAGGCCATAGGAAAGAGGTCCCGGTAGATTCCGTAATGCTCCGCCAGCCTCTGGATGTGATAAGGTCCGTTAGTTTTCTCCCACTCTGTCTTTACTTTGTCCAACGAAATGcgaac

Function

symbol description
mrpl38 Predicted to be located in ribosome. Predicted to be part of mitochondrial large ribosomal subunit. Orthologous to human MRPL38 (mitochondrial ribosomal protein L38).

NR:

description
PREDICTED: 39S ribosomal protein L38, mitochondrial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU48089 False 524 TUCP 0.53 3 10473374 10474792
TU48092 False 561 TUCP 0.54 4 10473374 10475783
TU48093 True 677 lncRNA 0.46 4 10471380 10473578
TU48095 False 598 lncRNA 0.45 2 10472880 10473578

Neighbor

gene id symbol gene type direction distance location
LOC103039374 NA coding upstream 29442 10437323 ~ 10441938 (+)
cdc42ep4 NA coding upstream 47135 10385012 ~ 10424245 (+)
LOC103040920 sdk2,sdk2b coding upstream 98039 9829485 ~ 10373341 (+)
LOC103043335 npffr1 coding upstream 1203784 9220731 ~ 9267596 (+)
LOC103022911 LOC108413183 coding upstream 1263696 9177238 ~ 9207684 (+)
trim65 trim65 coding downstream 607 10476390 ~ 10485798 (+)
foxi2 foxi2 coding downstream 564915 11040698 ~ 11042893 (+)
ptpre ptpre,LOC103359937,LOC107387775 coding downstream 709107 11184890 ~ 11217372 (+)
glrx3 glrx3,LOC107745700 coding downstream 1597580 12073363 ~ 12094731 (+)
jakmip3 jakmip3 coding downstream 2128174 12603957 ~ 12664928 (+)
G35677 NA non-coding upstream 388292 10081497 ~ 10083088 (+)
G35645 NA non-coding upstream 511513 9959325 ~ 9959867 (+)
G35621 NA non-coding upstream 636664 9833163 ~ 9834716 (+)
G35609 NA non-coding upstream 765078 9706049 ~ 9706302 (+)
G35554 NA non-coding upstream 1016563 9454482 ~ 9454817 (+)
G35748 NA non-coding downstream 11332 10487115 ~ 10488053 (+)
G35794 NA non-coding downstream 257995 10733778 ~ 10734007 (+)
G35810 NA non-coding downstream 372104 10847887 ~ 10848371 (+)
G35825 NA non-coding downstream 603089 11078872 ~ 11079443 (+)
LOC103033033 NA non-coding downstream 614509 11090292 ~ 11264386 (+)
LOC103024481 adamts14,LOC103367006 other upstream 1619988 8719354 ~ 8851392 (+)
LOC103037241 wac,waca,LOC107738973,LOC107665881,LOC107749376 other upstream 1998391 8442132 ~ 8472989 (+)
fasn fasn other upstream 2032515 8386173 ~ 8438865 (+)
G35021 NA other upstream 3567383 6902417 ~ 6903997 (+)
G34931 NA other upstream 3739956 6730954 ~ 6731424 (+)
dock1 dock1,LOC107740868 other downstream 271854 10747637 ~ 11001805 (+)
G35903 NA other downstream 1325675 11801458 ~ 11802204 (+)
bnip3 bnip3,LOC107553688,LOC107653114,LOC107582186,LOC107706607 other downstream 1635907 12111690 ~ 12566941 (+)
G35967 NA other downstream 1890757 12366540 ~ 12370962 (+)
G35995 NA other downstream 2226522 12702305 ~ 12703056 (+)

Expression


Co-expression Network