sun1


Basic Information

Item Value
gene id sun1
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 17000382 ~ 17040957 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU49796
AGTAACGTAGTTAATACATCCGCTCACGTCAGGAGAGATGGGTAGCGCTAACGGTACACCTTAATTTAACTAAGTGAACACCTGATGCTGCCTGAACTTCTTCCTGACAACCTGTCCCTTATTGTTTTAACTtctaaagtgttttatttatcgCGAATCATTTTCTCAACATAACTGGAGACTTCTGGAGCGAAGTCTGAACTGAAGGGACACCATGGCGTTTTCTAGAGTACGCACACACACTACTCAAGAGCTTGAAGCAGAGAATACGGGCTACACCTACTCTCTCAGCTCCAGCTACTCCACAACAGCGCTGGATTACGAGAGGGAGCATCGACTGGCTCCCGTGTTTGACTCACCCAGGATGTCACGCCGCAGCCTTCGGCTGCACGCAGGCAGCACTCACTACCGTGATGACAGCTTACTGGACTCTTCACACAACCACAGCATCTCCTACAGTTCtggaggttctgttcatcaggAGAGCAAgaCCTTAAAGAGCAGGAGGTCTCATCGCTCCTCAGCCGGTTCAGGCTCGCTGCTTCAGACTCCAGTAAAGAGTCAGTCTACCTCTGTGCTGCAGGCTCACAACAGCAGCCTGCGCAGCTGCACTGCCAGCGATGCCTCACTCCTGTCGTCCCTGCTTGACGAGTCGCGCATACAGGAGCGCACTCTCGTTGACAGCTTCTGGGgATTGGATGAGGATGGAGATCTCAAAGATCAGACTGTCCACGTGGAGCGCAGCTTCACTTCGGTGAACAATGGTGATATGAACACTTCTTCTCAGTCTCAGAAAACCACTATGAACAGCACTTACATCTGCAAGGACTGCGCCTCCACCCGCACTGACGGTCGAGACACTTTGCTGGCCTACTCTTCCTCCAAACCCTGCATATCCACCTCCTGCTCCTACTTCTCCTCGTCTGCTCAGCATCTTGCCACTGAGGATGGAGCCTCCTCTCCCTACACTACAGTATACAGCAGAGAGAAGAGCCGCCGACACAAATCCGGTGTGCTGGGGTTGCTCTCGGAGTACTGCCTGCATTATAGCAGAAAAGCTGCTACCTCTGTAGTGTGTATGTTCACACTGCTCATGCAGAGCATTCTGACGAAGACCTCTCACAAGGGCCAAGCCCTGCAGTCAGTGACCAactggtgtgtgagtgtgttcagGAGAGTGGCCAGTTCCTCTGCAGCAGCCCTCACACTGCTGTCTGGGTCTGCTCTGCTGAAAGCTTCCAGCAATGTCAATGCTAATGGAGGT
>TU49797
AGTAACGTAGTTAATACATCCGCTCACGTCAGGAGAGATGGGTAGCGCTAACGGTACACCTTAATTTAACTAAGTGAACACCTGATGCTGCCTGAACTTCTTCCTGACAACCTGTCCCTTATTGTTTTAACTtctaaagtgttttatttatcgCGAATCATTTTCTCAACATAACTGGAGACTTCTGGAGCGAAGCTCCAGCTACTCCACAACAGCGCTGGATTACGAGAGGGAGCATCGACTGGCTCCCGTGTTTGACTCACCCAGGATGTCACGCCGCAGCCTTCGGCTGCACGCAGGCAGCACTCACTACCGTGATGACAGCTTACTGGACTCTTCACACAACCACAGCATCTCCTACAGTTCtggaggttctgttcatcaggAGAGCAAgaCCTTAAAGAGCAGGAGGTCTCATCGCTCCTCAGCCGGTTCAGGCTCGCTGCTTCAGACTCCAGTAAAGAGTCAGTCTACCTCTGTGCTGCAGGCTCACAACAGCAGCCTGCGCAGCTGCACTGCCAGCGATGCCTCACTCCTGTCGTCCCTGCTTGACGAGTCGCGCATACAGGAGCGCACTCTCGTTGACAGCTTCTGGGgATTGGATGAGGATGGAGATCTCAAAGATCAGACTGTCCACGTGGAGCGCAGCTTCACTTCGGTGAACAATGGTGATATGAACACTTCTTCTCAGTCTCAGAAAACCACTATGAACAGCACTTACATCTGCAAGGACTGCGCCTCCACCCGCACTGACGGTCGAGACACTTTGCTGGCCTACTCTTCCTCCAAACCCTGCATATCCACCTCCTGCTCCTACTTCTCCTCGTCTGCTCAGCATCTTGCCACTGAGGATGGAGCCTCCTCTCCCTACACTACAGTATACAGCAGAGAGAAGAGCCGCCGACACAAATCCGGTGTGCTGGGGTTGCTCTCGGAGTACTGCCTGCATTATAGCAGAAAAGCTGCTACCTCTGTAGTGTGTATGTTCACACTGCTCATGCAGAGCATTCTGACGAAGACCTCTCACAAGGGCCAAGCCCTGCAGTCAGTGACCAactggtgtgtgagtgtgttcagGAGAGTGGCCAGTTCCTCTGCAGCAGCCCTCACACTGCTGTCTGGGTCTGCTCTGCTGAAAGCTTCCAGCAATGTCAATGCTAATGGAGGT
>TU49799
TGCAGCTTTGTGGGTTTTTAATTGGAGTCACATGGGTTTAGCAATCACATTACCTCAAAACCCAAACACAGGACAAAAACGGAAAATACACTAAATTCCTAAATATAATTCTATCCATGTTGTTAATACTGCAGTACATGGTGCATGTTGTAGCTGGGGTGTGTGCGCGTGCTGGACACTGCGCTGACCGGGGGAGGGTGTACTGTCTATTTAAGACGGGAGGGATCAACGGCTGAAGTCCCAGCTCCTTTTCTTTGCTGCTGAGAGGCCATTTTGGTGCGTGTGGTCTGAATTAGTTGGCGTCCTTTTTCCTCCCGAGTTCCCTTTTCCTGAGCTAGTTTTCGTGCGCTTTCACTCCCGCCCACTTCTCCACACCTCAGCGTCATGGCTTTTGTCAGATTGCGGCGCGAAGTCGAGCTAGGTGGACAGTCCTCGGAGTAAGAAGCGAAATCTGGACagcttgtttttgtgtgttttgcgtTAGCAGTGTCTGTAGTGTCTCTTAAATTCGCACTCAGCGCCTCGTACAGCGCCGTGATGGCTCAGACCTGCCTTTAAAAAGTCTGAACTGAAGGGACACCATGGCGTTTTCTAGAGTACGCACACACACTACTCAAGAGCTTGAAGCAGAGAATACGGGCTACACCTACTCTCTCAGCTCCAGCTACTCCACAACAGCGCTGGATTACGAGAGGGAGCATCGACTGGCTCCCGTGTTTGACTCACCCAGGATGTCACGCCGCAGCCTTCGGCTGCACGCAGGCAGCACTCACTACCGTGATGACAGCTTACTGGACTCTTCACACAACCACAGCATCTCCTACAGTTCtggaggttctgttcatcaggAGAGCAAgaCCTTAAAGAGCAGGAGGTCTCATCGCTCCTCAGCCGGTTCAGGCTCGCTGCTTCAGACTCCAGTAAAGAGTCAGTCTACCTCTGTGCTGCAGGCTCACAACAGCAGCCTGCGCAGCTGCACTGCCAGCGATGCCTCACTCCTGTCGTCCCTGCTTGACGAGTCGCGCATACAGGAGCGCACTCTCGTTGACAGCTTCTGGGgATTGGATGAGGATGGAGATCTCAAAGATCAGACTGTCCACGTGGAGCGCAGCTTCACTTCGGTGAACAATGGTGATATGAACACTTCTTCTCAGTCTCAGAAAACCACTATGAACAGCACTTACATCTGCAAGGACTGCGCCTCCACCCGCACTGACGGTCGAGACACTTTGCTGGCCTACTCTTCCTCCAAACCCTGCATATCCACCTCCTGCTCCTACTTCTCCTCGTCTGCTCAGCATCTTGCCACTGAGGATGGAGCCTCCTCTCCCTACACTACAGTATACAGCAGAGAGAAGAGCCGCCGACACAAATCCGGTGTGCTGGGGTTGCTCTCGGAGTACTGCCTGCATTATAGCAGAAAAGCTGCTACCTCTGTAGTGTGTATGTTCACACTGCTCATGCAGAGCATTCTGACGAAGACCTCTCACAAGGGCCAAGCCCTGCAGTCAGTGACCAactggtgtgtgagtgtgttcagGAGAGTGGCCAGTTCCTCTGCAGCAGCCCTCACACTGCTGTCTGGGTCTGCTCTGCTGAAAGCTTCCAGCAATGTCAATGCTAATGGAGGT
>XM_022669436.1
GATCAACGGCTGAAGTCCCAGCTCCTTTTCTTTGCTGCTGAGAGGCCATTTTGGTGCGTGTGGTCTGAATTAGTTGGCGTCCTTTTTCCTCCCGAGTTCCCTTTTCCTGAGCTAGTTTTCGTGCGCTTTCACTCCCGCCCACTTCTCCACACCTCAGCGTCATGGCTTTTGTCAGATTGCGGCGCGAAGTCGAGCTAGGTGGACAGTCCTCGGAGTAAGAAGCGAAATCTGGACagcttgtttttgtgtgttttgcgtTAGCAGTGTCTGTAGTGTCTCTTAAATTCGCACTCAGCGCCTCGTACAGCGCCGTGATGGCTCAGACCTGCCTTTAAAAAGTCTGAACTGAAGGGACACCATGGCGTTTTCTAGAGTACGCACACACACTACTCAAGAGCTTGAAGCAGAGAATACGGGCTACACCTACTCTCTCAGCTCCAGCTACTCCACAACAGCGCTGGATTACGAGAGGGAGCATCGACTGGCTCCCGTGTTTGACTCACCCAGGATGTCACGCCGCAGCCTTCGGCTGCACGCAGGCAGCACTCACTACCGTGATGACAGCTTACTGGACTCTTCACACAACCACAGCATCTCCTACAGTTCtggaggttctgttcatcaggAGAGCAAgaCCTTAAAGAGCAGGAGGTCTCATCGCTCCTCAGCCGGTTCAGGCTCGCTGCTTCAGACTCCAGTAAAGAGTCAGTCTACCTCTGTGCTGCAGGCTCACAACAGCAGCCTGCGCAGCTGCACTGCCAGCGATGCCTCACTCCTGTCGTCCCTGCTTGACGAGTCGCGCATACAGGAGCGCACTCTCGTTGACAGCTTCTGGGgATTGGATGAGGATGGAGATCTCAAAGATCAGACTGTCCACGTGGAGCGCAGCTTCACTTCGGTGAACAATGGTGATATGAACACTTCTTCTCAGTCTCAGAAAACCACTATGAACAGCACTTACATCTGCAAGGACTGCGCCTCCACCCGCACTGACGGTCGAGACACTTTGCTGGCCTACTCTTCCTCCAAACCCTGCATATCCACCTCCTGCTCCTACTTCTCCTCGTCTGCTCAGCATCTTGCCACTGAGGATGGAGCCTCCTCTCCCTACACTACAGTATACAGCAGAGAGAAGAGCCGCCGACACAAATCCGGTGTGCTGGGGTTGCTCTCGGAGTACTGCCTGCATTATAGCAGAAAAGCTGCTACCTCTGTAGTGTGTATGTTCACACTGCTCATGCAGAGCATTCTGACGAAGACCTCTCACAAGGGCCAAGCCCTGCAGTCAGTGACCAactggtgtgtgagtgtgttcagGAGAGTGGCCAGTTCCTCTGCAGCAGCCCTCACACTGCTGTCTGGGTCTGCTCTGCTGAAAGCTTCCAGCAATGTCAATGCTAATGGAGGTACTAATGGAGGGTTCAGTACTCAATTCATATGTACAAAGTCCTGTCCGTATATATTAATCACAACAGGTGACGACTGTAAAGGGAAGCAGACTCTGAAGACGAGTGTGGTCAGCACACATTCACCCAGGGCTCAGCAGCTCTTAGGGGCTCTGTGGTTCCTTGTAATTTTCACAGGCAGCAGTCTGCTGAGGGCGGGGCAGAGGCTTCTTTCAGCAGGCTGGCTTATCACACGGAAGATTCTGTCTGTCATGTATTTGGCTGCCGTGTCTCcagGCAAGGTAGCTTCAGGAGCATTCTGGTGGCTGGGAACAGCATGGTACCAGCTTGTGATGCTCATGTCTCTGCTGAACGTCTTTATTTTGACAAGGTGCCTACCCATATTGCGTAAGCTTCTTCTGATACTTCTTCCTTTTCTGCTGCTGTTTGCTCTTTGGTACTGGGGTCTGTCTGGTCTCTGGGCCATTTTGCCTGCAGCTAACACGACTGTGTGGAGGACTGACTCTACGCTTGACTCCACCACAACAGCGCACACACCTATCGATACAGCTAGTGAAGGTCATCCTGGCATCACTCCACCATATCAACACTATGAGGGTAAGACTGAAGTATCTGCAGCACACTTGGAGAGGCTGGAACGATTAGAGAAGAGCCTGACACAACTGTGGGAGCAGGTAGCAGCAACGGGCAGCAAGCAGGAGGAGCGCCACGGAGAGGTACTCAGTCTCTACAGTGTTCTGAAAGACGAGCTAGACAagaacacagacagagacagccTGAGCCTGTGGATAAACAATCTAATGGAGCAAAGAGTCGGCGTGCTGAGGACAGAAATGGAGAAGGAGACACAGCAGACGCAGCAGAATCAAAACGAGTTCAAAGAAGAGAATCGGGCTCAGGAGTTACGGCTTGCCAAAGTTGAAGAGCTTATTAGGAACGTGGCGCTCAAAACAGAGgAGTTACAGAGAACACAAGAGGTCAAAGCTCCAGCCATTGTCAGTGGGGAAACGGATGAGGCGTCCTATTTGGCTCTGTTGGCGGAGGTGCGCCGGCTGGAAGAGGCCCTGGGAGGAATCAAGACTGACCTTCAGGGAGTGATGGGCTGTAAGGGCAGATGTGAACATCTGGACTCTTTACATGACACAGTGTCTGAGCAGGTTAGACAGGAGATGCGGTCTCTGCTGTACGGCCGAGACCAGGAAGCAGGAACTGAGCTGCCGGAGTCTTTGCTGCAGTGGCTGTCGACTCGATTTGTGAGCAGCTCAGACCTGCAGGCATCACTCGCTGCCCTGGAGAGGAGCATTCTGGGTAACGTGTCTCTGCAGGTGGAGCAGACGCAGCAGAAGCCCTGTGCAGAAACTGTCACTAAGGCTGTGCTAAAAACCACTGGCGATGCAGGCTTATCAGAAACGCAAGTGCAGCTGATTGTGCAGAATGCTCTGAAGCTCTATTCACAGGATCGCATTGGACTTGTGGATTATGCTCTGGAGTCTGGAGGTGGCAGTGTACTGAGTACGCGTTGTTCAGAGACCTACGAGACCAAGACTGCACTGATGAGTCTGTTTGGCCTGCCGCTGTGGTACTTCTCTCAGTCTCCTCGTGCTGTCATACAGCCGGATGTACATCCTGGTAACTGCTGGGCATTTAGAGGTTCTCATGGATATCTTGTGATCCGTCTCTCCATGAAGATCGTGCCCACAGCCTTTTCTGTGGAGCACATCCCCAAAACCCTCTCACCGACCGGCAACATCAGCAGTGCTCCACGGAACTTCACTGTCTATGGCCTGGAAGATGAGCAGCAGGAAGAGGGACAGATTCTGGGACGATATGTCTACCAGGAAGACGGAGAGCCTCTTCAGACCTACCATGTCACGGATAACACTAAGGCCTACCAGATCATTGAGCTGAGAGTGCTGAGTAACTGGGGTCATCCGGAATATACCTGCCTCTACCGTTTCCGGGTGCACGGCGAACCTGCACAGCAATGATCAAAGACTGAGCTGGATCAGGACTTCATGGTTAAGACTGGAGTTTCACAGAGGAGGCAGCGTACCATCAGTCCATCTGGTCCAGTCTGGAGACAGGCAAACTGACTGCTTGCTAAACCTTTAGATTTGCTCCTCTGCATTTTGTACTCCTGTATATCTCGTACGAGGCTTGTACTCGGTTAAGCTCCTCTTGTATTCGGCCAACAGCGGGCACCCGGCAGAATAACCGGGATTGGTCTGAATTGCACTCAAACACTCAGTAAGTCAAACCTAAATAAAATGGACTAGAATGTATTTTAAACTACATGTTGTAAATGTTGTTAATAGTTTGTCAGCTTTAAGCACGGCTAATAATTTGCTTTTTGCCCCTTACCTGCATAGTGTAATGAGTTTCAAATGCTCAGCGAAACAAGGCTGTTTATTAatcactatttattttttgtgtattttgagtTGATCTTAGTAAGActttgtattgtgtatttttgtaaatacttttcaaataattttgtaattaaGGGACCACAGGTTGGCTTTTGCAATGAAGCTTTATTTTGGTTGTGTGGAATGATTAAATAaagagtaatttttttaaaa

Function

GO: NA

KEGG:

id description
K19347 SUN1_2; SUN domain-containing protein 1/2

RNA

RNA id representative length rna type GC content exon number start site end site
TU49796 False 1264 TUCP 0.52 8 17000382 17018884
TU49797 False 1168 TUCP 0.52 7 17000382 17018884
TU49799 False 1631 TUCP 0.52 8 17002440 17018884
XM_022669436.1 True 3991 mRNA 0.50 23 17002663 17040957

Neighbor

gene id symbol gene type direction distance location
LOC103036473 myof coding upstream 2267 16945064 ~ 16998115 (+)
tubgcp2 tubgcp2,gcp2 coding upstream 56988 16929511 ~ 16943394 (+)
LOC103044975 reep3,LOC108412837 coding upstream 248179 16715891 ~ 16752203 (+)
nrbf2 nrbf2,LOC108437426,LOC107654066,LOC107593503 coding upstream 473135 16407964 ~ 16527247 (+)
LOC103046195 NA coding upstream 540469 16457415 ~ 16459913 (+)
LOC103034053 rac1,RAC1,rac1a,LOC105898786,LOC108412270,LOC108437155,LOC107569188 coding downstream 6627 17047584 ~ 17054418 (+)
LOC103033077 LOC108412267,LOC108274277,LOC107596603,LOC107695555 coding downstream 27979 17068936 ~ 17079779 (+)
LOC103032462 cunh16orf52,c16orf52.L,c17h16orf52,C20H16orf52,LOC102224510,LOC106518731,LOC108258941 coding downstream 41356 17082313 ~ 17092610 (+)
eef2k eef2k coding downstream 56352 17097309 ~ 17116008 (+)
LOC103032149 NA coding downstream 82648 17123605 ~ 17131713 (+)
G36959 NA non-coding upstream 62351 16937012 ~ 16938031 (+)
LOC103038048 NA non-coding upstream 133428 16863070 ~ 16866954 (+)
G36915 NA non-coding upstream 162418 16836526 ~ 16837964 (+)
G36899 cyp26a1,LOC103044660,LOC108412396,LOC108273895,LOC107739064,LOC107596578,LOC107695519,LOC107653962,LOC107593523,LOC107745679 non-coding upstream 207782 16733612 ~ 16792600 (+)
G36852 NA non-coding upstream 430990 16540984 ~ 16569392 (+)
G36969 NA non-coding downstream 16547 17057504 ~ 17058002 (+)
G36977 LOC108273417,LOC107663179,LOC107734164 non-coding downstream 114989 17155946 ~ 17165403 (+)
G36981 NA non-coding downstream 125952 17166909 ~ 17167150 (+)
G36982 NA non-coding downstream 128394 17169351 ~ 17169856 (+)
G36983 NA non-coding downstream 131468 17172425 ~ 17172625 (+)
cabcoco1 NA other upstream 766543 16213790 ~ 16233839 (+)
LOC103028998 pyyb,LOC103028998,LOC108410797,LOC107745683,LOC107569181,LOC107684781,LOC107695522,LOC107753323,LOC107560546 other upstream 1560225 15432829 ~ 15440157 (+)
G36439 LOC103041415 other upstream 2209549 14789380 ~ 14790833 (+)
LOC107197918 NA other upstream 2432470 14564925 ~ 14567912 (+)
G36371 NA other upstream 2536743 14463137 ~ 14463639 (+)
phf5a phf5a,PHF5A,LOC107584099,LOC102780084,LOC106609350 other downstream 160540 17201497 ~ 17205033 (+)
cby1 cby1 other downstream 191863 17232820 ~ 17234559 (+)
LOC103027613 cdc42ep1,LOC106609444,LOC105025094,LOC106589540,LOC107734237,LOC107584101,LOC107690062 other downstream 210024 17250981 ~ 17282231 (+)
tnrc6b tnrc6b other downstream 256522 17297479 ~ 17340892 (+)
LOC103045739 LOC103045739 other downstream 664722 17705679 ~ 17708597 (+)

Expression


Co-expression Network