G52503


Basic Information

Item Value
gene id G52503
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 3027695 ~ 3033677 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU59818
ATGCAGCCATGGGGGTGGAGAGATGCTATGTAGTTAAACCCAAGGCAGGCTGTGGATACAACACTTCCAGAGTGACACTCGCAGAGAACGGCAAAAGCTCAGCCTCAAACACACACACGCACACACACACACGCACACACACATAAAGCAGCAGATCTTAACAGGATACTGCAGTCAGTCACAGGCACATGAGCACTGGAGGAAATGGAGTGACAAGAAAAAGGAAGACACAAATCACAACGTGCCATGTGTGCAGAAACAGATTGTCCGCTATTAGCGGTGATGGAGCACGGAGGAAGATTGCAGCGAAGTCAAACAAAAGTGCCTCAGATGATGATTCCTGAAACAGGACAGACTTGCTCATCCTCCGCCGGGTTATTCAGACTGGCTCAATCTATTCAAGATCACATAATGCTCCATGTCTTCATTTCAATTTAGGCGCTGAGGATGGCTCGAGTGGACGACCGCTGCCGGTGACTTTTTAGGGTGCTCATGAGGTGCTCAGTAGTCAGTGTAGATCCTGTGTTGCAATCAGCAGCTACATCTGGCTACTGGGTCTCTGATGGCATTTTCTGCTTCCTGTTGGCACATTCCTTTCAGATTGTGTGGTATGTTATCACAATGTGTGCTTCATCCTGTCAGAATAGGACTCACTCTTTCATGGATGTTAAAGAGGGCCCTTGTCATAACAGTCTGTCTCTTTGACCAGACCGATTCTGCGCTGTTTTTGCACTTTTAGCCTAGTTCATTGTGGGGGTTTTTCCCCTAAAACAATTTGATCAAGGTGAGTTAACTCTCACAGCATAGCTAAAAGCCTCGAGAAACCATTTCAGATGTCTTTGAACGGAAGGAATGAGACATTGTTTCTTGTTTGACTGCTGAAGATTCGGTTTAAGTGATTAGGTAACAAAGGACAAGGCGACATGTCACATTCCCTTTGTGTTTTGCCTGTCACAAGGGGCTGTCTTTGTGAAAATGTTTTTGAGTTGCTGAAGGCTGACAAATAATGAGAGTTAAATGCGCAGACATGCTGAATCGCATCAGATTTGGAAAGCGAAGGATGAATTCTTTTG

Function

NR:

description
PREDICTED: DNA-directed RNA polymerase II subunit RPB1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU59818 True 322 lncRNA 0.46 2 3027695 3033677

Neighbor

gene id symbol gene type direction distance location
CI01000009_02975388_02982670 NA coding downstream 20173 2975388 ~ 2985391 (-)
CI01000009_02916137_02917550 FUNDC1 coding downstream 88014 2915641 ~ 2917550 (-)
CI01000009_02904768_02914992 EFHC2 coding downstream 90317 2904691 ~ 2915247 (-)
CI01000009_02885473_02893975 NA coding downstream 111589 2883688 ~ 2893975 (-)
CI01000009_02844171_02861309 MAOB coding downstream 144255 2843011 ~ 2861309 (-)
CI01000009_03140599_03143635 SLC35A5 coding upstream 106922 3140599 ~ 3143635 (-)
CI01000009_03171440_03194494 DCAF6 coding upstream 137763 3171440 ~ 3195145 (-)
CI01000009_03226613_03234223 ME3.L, ME3 coding upstream 192091 3225768 ~ 3234223 (-)
CI01000009_03235111_03242103 NA coding upstream 201337 3235014 ~ 3242103 (-)
CI01000009_03244366_03259106 ILDR2 coding upstream 209921 3243598 ~ 3259106 (-)
G52553 NA non-coding downstream 9659 2995649 ~ 2995905 (-)
G52489 NA non-coding downstream 92219 2913118 ~ 2913345 (-)
G52488 NA non-coding downstream 93022 2912305 ~ 2912542 (-)
G52478 NA non-coding downstream 181636 2822962 ~ 2823928 (-)
G52556 NA non-coding upstream 12212 3045889 ~ 3046097 (-)
G52557 NA non-coding upstream 15421 3049098 ~ 3049653 (-)
G52566 NA non-coding upstream 37484 3071161 ~ 3071388 (-)
G52518 NA non-coding upstream 48314 3081991 ~ 3082437 (-)
G52589 NA non-coding upstream 114251 3147928 ~ 3149432 (-)
G52410 NA other downstream 443031 2551724 ~ 2562533 (-)
G52098 NA other downstream 1597937 1401932 ~ 1407627 (-)
CI01000009_03261739_03262843 NA other upstream 227526 3261038 ~ 3262843 (-)
G52828 NA other upstream 1183743 4217420 ~ 4231469 (-)
G53515 NA other upstream 2468718 5502395 ~ 5505248 (-)
G55814 NA other upstream 5392144 8425821 ~ 8428012 (-)
CI01000009_08858198_08860555 NA other upstream 5824475 8856310 ~ 8860563 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_037985 dre-mir-222a non-coding NC_007120.7 CM002893.2 33921464 ~ 33955939 (-)
striped catfish (Pangasianodon hypophthalmus) G82800 NA non-coding NC_047599.1 CM018545.1 14919754 ~ 14920334 (+)
tiger barb (Puntius tetrazona) G66351 NA non-coding NC_056706.1 CM032075.1 23434118 ~ 23435033 (+)