G103060 (bcl9,LOC107746285,LOC107676875,LOC107566537)


Basic Information

Item Value
gene id G103060
gene name bcl9,LOC107746285,LOC107676875,LOC107566537
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 12730421 ~ 12733320 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU139283
ATCTGACCAAGTATTTCAAACACAGCTCTCAATTTGAGAATGATGCACACACTCTAGATTTCCACCAGGGGGCAGCCAACCACCATTTATACTCACTGAAGAGAAAGACACAGGGCTGCCTGACACTTTATaccaaacaatatattttatttgtcttcCAACACCACAGCCCAGCCTTAGGAAGTGGTTCAGTACCAAATTCAATGGAGTTACACATGACAAGCATCAACACAGGAGGGCTGGGGACATGAGGACAACCTATTAGCTTTTTCTGTCGTTTTTCATCATTTGTTTtctacaaaagaaaagaaaaaaaaaattgccaccCATCAGTAATCCAGCGCTGCTCTGCATAGCCGTCGGCTAGAGTTATTGTAATGTTTGATTCCCCCTCTGTGTTCCCCTCCCCAAGAATGTTATATGCTTGCGGTCTTTGAGAGGCACCGCGACTGCAAACTCCTGTACCCCGTGTTCCAGCTTACGGacgaaaaaatataaaataaaaactgtaacaccAGCCGACGGCACGCATCAGATTTCCGCTCCTACTGACTGTTGTCGAAGTGTTTTTctctacaattaaaaaaaaagaaagattaaagaaagaaccaaaaaaaacaaaaaacacttcttATTCTTTACAGTTAATTCTTGTTTGTGCttgatttttaataatactaTGATCTGTATGAGGTCTTAGTTTGGTTTTATCATACATGGGAGTAGCAAaggaaattaaatttaaaatattctgtACGCCCCCGCGGTACACAGTATTTTTGTGgtggcgttttttttttgtcgcaCCGTATCGACGACCACCAACAGCCACCCCCAACCCTCCCCCTTTACAAAtgaagatggaaaaaaaaacctataGAAGTCACTGGTAAAATCCCTTTAACAACACAAGTACAGTACACACATACAAAGAGCATTTCATGACTCGGAGGGAAGTGATGCGATGAGATGTAAACATACAGCCAAGACGGTGCAACTTGTGACAAAATGTTTcttgactttttctttttttcgtcGTTCAGTTTGTGTTTTGTCTCCAACCATTTTTACTCGGTTATCTCCCTCCGTttgattttttctgttttttttttttgtttttatataaaagtacAACAATAAACCGCTACTTTCAGGTAAGGTCGGGTCAGGTAAAGTCAAGTTGTCCATTTGCTTGGTTTGCTGTTGTTGGCTTTGTGACCACACATGGACTTACGGTCACACAAGATCAGGCTAAAAAGACCTTACTCTGAGTCCGAGTCTGTCTCTCTGAATCCGAATACATTCCTGATGTTCCAAACGGAGCTGAAACTGGACCAAACGGCGAGGAGGAAGAGGGGGGCACATTATTGTAAATCCCCTCGTCCCTTGTAGCTCTTCACCTGCAAAAAGACTTTTCTAAAGATGAGGAATCCCTCGGTATACATCCAGGTGTCCGTTTTTTTGGGTgtgggtttgtttgtttgtgtctctgtgtaAATCCAGAACTCACTCAAGGCCACTGAAGCCTTGTCCTACCTAGGTGTGCTCGAGCAACAAGTGCCCCAGTTCTCCCACACACTGTCTTGAAACATGAACACACAACCACATGTagctcttttgttttgtttccttttataaaaaaagtccttatttattttcacagGTTATGCAGTATCCGGATTGTTCGGTAAATTGCGGTGGAGGCTCGACGGTTACTTGTAGCAGCTCAGAACATTATATTCCCAGGATTCCCTGGGCCAGGGTTAAAGCCCATCCCCATGTCTGCTGACATGCCCCGAGGCCTCATCTGAGGAGGCATCATCATAGTCTGCTGAGGACCACCCATCCCTTGTAGTGACATCATGTTGGGGGAGCCCACCGGGCCGGGATGGTTGTACATGGGCCTCTCTTTGCCCTGCATCATCCCGGGGCCTCCCATCATGCCTGGCTGTTGGCCAGGTGACAACATCCTGTGCTGAGGACCCATCATGCCCTGTCCCATGAAGCCTGGGGGCCTCATGGGGTTGTGTCCAGCATTACCCATGGGCATGTCCTGGGGCCCCATGTGGCCAGGACCAGGGGGGCCTCCCATGCCCTGCATGGGGAGACCCATCCTGGGGTTGCCCTCACCCATCATCCCCTGCATGGGGGGGAATCCGGGTGGGCCTGAAGGGTGAGGAGGCTTGCCACCAGGCGCCTCTCCACCGCGGGGGAAGTACGACAGAGTCTGGCTAGGCTTCTCTGAAGGTATGATGCGCGAGAGGTCAAACTCGGGGATACCCGAGGCGCCCGGCCGCATCACCTCGTGCAGATCCGAGTCATTGAAGACACCTGGCATGTTGTTGAACTCCTGGCCACCGGGTGTGTTAGGCTTGCACATTCCTGGCTCACCGCCGGGTCCGTGCGGCATGTTACCCATCCTTCCCATCGGACCACCCTCTCCTTGGAAGCCCATCCCGTGTGGGAAGCCACCTTGGGGTCCGGGACCATTGTGCGGAAAGGGCACCTGCTGTGGAGGAGATTGCCCTGGAGGGAAGCCCTGTCCTCGATGAGGGAGACCCATGCGACCTTGGGGCATCATCTGGTTGCCGGCCATGCCTGGGTCTTGGGAGACGGGAGGCATCATCATGCCGTGGGACATCATGCCAGGACCCATGGGGCCGGAGTGTGGAGGCATGTTAGGGCCCATAGGATTGGGTGAGGGCATCTGGTTAGGCATGCCATGGGAAAGAGGCTGGGAGCCCATAGCGTTCATACCCATGGGGCTGAGCGAAGGCATGGGGCCTGCAGAGTTGGGAGTCATCATACGCGGATGGCCTGGATGATGGTTCACCC

Function

symbol description
bcl9 Predicted to enable beta-catenin binding activity. Acts upstream of or within embryonic viscerocranium morphogenesis and regulation of canonical Wnt signaling pathway involved in heart development. Predicted to be located in nucleus. Predicted to be part of beta-catenin-TCF complex. Orthologous to human BCL9 (BCL9 transcription coactivator).

NR:

description
PREDICTED: B-cell CLL/lymphoma 9 protein-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU139283 True 2835 lncRNA 0.49 2 12730421 12733320

Neighbor

gene id symbol gene type direction distance location
setd4 setd4 coding downstream 197404 12523119 ~ 12533017 (-)
itsn1 itsn1 coding downstream 218783 12421848 ~ 12511638 (-)
LOC103024042 NA coding downstream 315267 12406564 ~ 12415154 (-)
LOC103022264 LOC103022264,LOC108428207,LOC108258611 coding downstream 325273 12379053 ~ 12405148 (-)
LOC103021965 pdxk,pdxkb,LOC103021965,LOC108428208,LOC108258310,LOC105019670,LOC107676865,LOC106574311 coding downstream 384115 12314568 ~ 12346306 (-)
neurl1 neurl1,LOC107676877,LOC107746052,LOC107692176 coding upstream 311426 13044746 ~ 13091301 (-)
LOC111193616 NA coding upstream 872750 13606070 ~ 13611521 (-)
LOC111193617 NA coding upstream 1050975 13784295 ~ 13785862 (-)
LOC111193618 NA coding upstream 1162047 13895367 ~ 13908995 (-)
LOC103043485 LOC108439384,LOC108258306,LOC106595798,LOC103481235 coding upstream 1281016 14014336 ~ 14039856 (-)
G103045 NA non-coding downstream 39300 12660694 ~ 12691121 (-)
G102974 NA non-coding downstream 505288 12224870 ~ 12225133 (-)
LOC111193533 NA non-coding downstream 585667 12130057 ~ 12144754 (-)
G102960 NA non-coding downstream 600908 12127482 ~ 12129513 (-)
G102958 NA non-coding downstream 672774 12056522 ~ 12057647 (-)
LOC111193534 NA non-coding upstream 18003 12751323 ~ 12777298 (-)
G103107 NA non-coding upstream 98226 12831546 ~ 12835182 (-)
G103124 NA non-coding upstream 284616 13017936 ~ 13018168 (-)
G103126 sh3pxd2a non-coding upstream 287469 13020789 ~ 13021987 (-)
G103128 NA non-coding upstream 295051 13028371 ~ 13032458 (-)
dleu7 dleu7 other downstream 462107 12263607 ~ 12268314 (-)
G102753 eif5b,LOC102778822 other downstream 1330941 11395026 ~ 11399480 (-)
G102696 ddx39ab,LOC108428188,LOC100706537,LOC107563747,LOC107708265,LOC103375030 other downstream 1727057 10993247 ~ 11003364 (-)
G102421 NA other downstream 2178700 10549357 ~ 10551721 (-)
LOC111193526 NA other downstream 2253072 10468444 ~ 10477349 (-)
LOC103027015 LOC108428198,LOC108242922,LOC108258849,LOC106529254,LOC107095979,LOC102195799,LOC107746286,LOC107566538 other upstream 4255 12737575 ~ 12751198 (-)
LOC111193535 NA other upstream 869249 13602569 ~ 13605981 (-)
G103292 LOC108439371 other upstream 939802 13673122 ~ 13673994 (-)
LOC103029054 NA other upstream 1467407 14200727 ~ 14205695 (-)
G103763 NA other upstream 2074136 14807456 ~ 14807878 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G80175 NA non-coding CI01000013 null 4072562 ~ 4078376 (+)
grasscarp (Ctenopharyngodon idella) CI01000119_01346109_01356546 BCL9 coding CI01000119 null 1345181 ~ 1356546 (-)
bowfin (Amia calva) G73045 NA non-coding CM030128.1 CM030128.1 32256009 ~ 32256776 (+)