G103126 (sh3pxd2a)


Basic Information

Item Value
gene id G103126
gene name sh3pxd2a
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 13020789 ~ 13021987 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU139362
CATCATTCACAGGCTTGCTTACCTATGGCCTCAAAGCCTATTTAAAAGATAATGGGAGAATATATTAACACTTAACGAATGTAAAACAAGCAAAGAAACAATGTTTTTAACAAACTGGGCTGTAAAAAGGTCCTAAATTTTAAGCATGTGCATTAAAACGACAGTCCTTAAAAGATTTGGGAGTATAGTGAtttctctggtgagaatgtataattgtataattacaCAGAGCATGtgaaagagtacttttaatgcataactaaaaaaaaaatcttatggactgctgctttaaactaTTAACAATACTTACCGATTTCCACTCGATGTGGAGCCACTCTTGCTATAGCAGGTGACCCTGGCTCTGCTTTTGGCTTGCTGTCCTGTAGAGCAGCACTGGATCCACATCCTGAGCCTGCAGCTGCAGCAACGCTGGCAGTCATGGACTGCTCTGCTTCAGCAGAACATTGAATGGGAAGACTGATCTCGCTCTTGGAGATGTGACGCTCCAGCGTGGTGGGCTCTCCATCTGTCTGCACATCCTTTTCGCTCACGGCTTTCTTGTTTAGCAGGTTGCTGATCTCCATAATGTTGCCAATGATCTCCACCGGGCCAGTCAGGGTCTTCTTCCTCGGAGACAGGTCGTCTTTTAGCTTCTTCAGGTACGAGGCTGGGGCCCAGCCCTCCTTTCCCAGGTACCTGTAACCACAGAGGACAAATGTTACCtgtggttttaattttttttttaagtttacatCAGTGGTTGTCTTTTAAATCAGAAGGAATTGTATTACACTTGTTTAATATTGAGAAAACACTATTTATTGTGTATGAGTATTTTccacttggtttggtttgttttcacacagggacAATGTGAGTGCACAAAAATGTATCACAAAAAACATGTGGGAAAGTTCTCTCTGGTTGTTTTTCAGACCTGTTTGTggtgggagcaagaaagtagaTACACAAAGAAGCTCTCAGGATGTACCGAAATttgcaaacaaaaatatttgtccaaaaatgcaaaacaacCACTTATTTATAAGTGAAAATAGTttagaattaaaatattttatacaaaacaaGACATGTCTATTTTAAGTCACACAGCAGTGTGAGTAAATTCCATGACTAAaagtgcactgctgaggtaaaggaatgactaaaattgcactactGTTAAATTTATTGTGCTT

Function

symbol description
sh3pxd2a Predicted to enable superoxide-generating NADPH oxidase activator activity. Involved in osteoclast fusion and superoxide metabolic process. Located in podosome.

NR:

description
PREDICTED: SH3 and PX domain-containing protein 2A isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU139362 True 1199 lncRNA 0.39 1 13020789 13021987

Neighbor

gene id symbol gene type direction distance location
setd4 setd4 coding downstream 487772 12523119 ~ 12533017 (-)
itsn1 itsn1 coding downstream 509151 12421848 ~ 12511638 (-)
LOC103024042 NA coding downstream 605635 12406564 ~ 12415154 (-)
LOC103022264 LOC103022264,LOC108428207,LOC108258611 coding downstream 615641 12379053 ~ 12405148 (-)
LOC103021965 pdxk,pdxkb,LOC103021965,LOC108428208,LOC108258310,LOC105019670,LOC107676865,LOC106574311 coding downstream 674483 12314568 ~ 12346306 (-)
neurl1 neurl1,LOC107676877,LOC107746052,LOC107692176 coding upstream 22759 13044746 ~ 13091301 (-)
LOC111193616 NA coding upstream 584083 13606070 ~ 13611521 (-)
LOC111193617 NA coding upstream 762308 13784295 ~ 13785862 (-)
LOC111193618 NA coding upstream 873380 13895367 ~ 13908995 (-)
LOC103043485 LOC108439384,LOC108258306,LOC106595798,LOC103481235 coding upstream 992349 14014336 ~ 14039856 (-)
G103124 NA non-coding downstream 2621 13017936 ~ 13018168 (-)
G103107 NA non-coding downstream 185607 12831546 ~ 12835182 (-)
LOC111193534 NA non-coding downstream 243491 12751323 ~ 12777298 (-)
G103060 bcl9,LOC107746285,LOC107676875,LOC107566537 non-coding downstream 287469 12730421 ~ 12733320 (-)
G103045 NA non-coding downstream 329668 12660694 ~ 12691121 (-)
G103128 NA non-coding upstream 6384 13028371 ~ 13032458 (-)
G103164 NA non-coding upstream 190935 13212922 ~ 13214646 (-)
G103256 NA non-coding upstream 574278 13596265 ~ 13596788 (-)
G103293 NA non-coding upstream 603735 13625722 ~ 13627086 (-)
G103300 NA non-coding upstream 639422 13661409 ~ 13661758 (-)
LOC103027015 LOC108428198,LOC108242922,LOC108258849,LOC106529254,LOC107095979,LOC102195799,LOC107746286,LOC107566538 other downstream 269591 12737575 ~ 12751198 (-)
dleu7 dleu7 other downstream 752475 12263607 ~ 12268314 (-)
G102753 eif5b,LOC102778822 other downstream 1621309 11395026 ~ 11399480 (-)
G102696 ddx39ab,LOC108428188,LOC100706537,LOC107563747,LOC107708265,LOC103375030 other downstream 2017425 10993247 ~ 11003364 (-)
G102421 NA other downstream 2469068 10549357 ~ 10551721 (-)
LOC111193535 NA other upstream 580582 13602569 ~ 13605981 (-)
G103292 LOC108439371 other upstream 651135 13673122 ~ 13673994 (-)
LOC103029054 NA other upstream 1178740 14200727 ~ 14205695 (-)
G103763 NA other upstream 1785469 14807456 ~ 14807878 (-)
LOC103040703 NA other upstream 3157187 16179174 ~ 16182189 (-)

Expression


Co-expression Network