G106674


Basic Information

Item Value
gene id G106674
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 28108113 ~ 28111177 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU144108
CCTCAGGTAATGCTGTAAAGTTCAGGAGGAGGGGGAGGTGTGGCCACTGTTGAGGACGACAACAAACAATACCGTCATGAAATGagagaaatgaataaaaaaaaagaattgagaGAAATCGTAGTTTAAACATAGCCATCACACAGTTTCACATTATACACGGGTTCGCCTGAAACTCAGGACGTTCAGGACGTTCCCACAAACACCGGGTTCTACTGATGAGGAGGTTCGGTTCTGCTAGGTTCTGTCTAGAGGAGAAATAAACAAGCACAAAGtggtttatataataaatagcgGGGGAAACACACTCGCGTCACGCGTCATTCACTAATATCCAAATGGTAACGCATGGGAGCGGTTCAGAAGGTCTTGCATCTTGCAGGAGGTCGTCTACATATACTGTACGTATTTACAGCGTATAACAAAGAGAAGGGATGAGTAAAAAGGGGAGGGGCCACAGCAAATCTTCAAAGCAGCGAGAAAACAAAAGGTTAACCCACAGAGTAAAGCTTAATACAAATAcatgaagaggaggatgaatAAGGAATAGCGAATAGAGGGTTCAATTTTCCCGATGCAGTCGCTCGGATTACATTAACACCTGTAGAGTAGCATAAAATAGAGCAAacctcccattttctccccaatttacaagaccaattagcacacgcctcctccgatacatgtaaagtcagactccgcctctttttaaactgctgctaatgctgtagcattggccagtagcatcacagcgctaacgctcggaggaaagcgcagcgactcggtgggttctgatacatcagctcacagatgcagccttgtgctgttccacatcaccctaggagtgatgaggggaaagagagagcgccatctactactgtacccacccagagagagcaagaccaactgtgctctctcagggctccggcagctgatgacaagctacatgaacaggattcgaacaagTGATCTcacaatcatagtggcagcgcttagcccgctggatcactttacttttaattcaaataaattccacttacagtatctgaaataaataaataaatatggcaAATTTGTAAtcattgaaaaatatatttgaaaaaaaaaggcctattttttttaatggctaaaTCTTTGTGGGTGGAAAAGATGTGGattgttataataaaatattaaaataatctaGAATTTGACCTTTGCTTCCAACTGGGTCCACATtttatgtaccgtattttttttactataagtaCAGAGCTATACAGGCgtttcagtttagctctccaTCACCcttgctgctgcacccagccttagtgtaaatctggaaatctaagcttcctgtaaataaacagaagctctttactctttattcactaaaatgaacagttttcaggagagaaatctgtgtagattaacagccAGCGCTTGATAAACTTGAatagaaaatgttattttcttagcttagctttacaggtctctgctgaattagaaggtaaACATGGGgagacccctgttccttactagtgtctcataatgcgccttataatctagttggccttataatgcgaaaaatacggtaaaattTACAGCAGATCGTACGACATCCATCCAATACATCCTGCCCTACACCAGTCTACtctttctgtagtttatactgAAAGGTCTTTCGTAAGCTTACGTTCAATATTATAATAAGCATTAATCCAGTGTAAATACTGCAAGCCAGTGTTTGTAGGCGTTACCGTAACCCCGGGCGACTGCACCGTGCGATGATCAACATATAATCACAATCAAGAAGCACACGAAGGAGCTGGCACTGTGCCAGACCACTACTACACACGGCGCACGTTTAGCGTAAAGGAACGGCGCAAAGGGGAAGCGTGAAAACGTTAAAAACAATCGTAAAAATCCAGAGGAAAGAGATTCACGGTATTTACAAACTCCGCCTTGTAAATGCCTCGCGGCgctctataaaaatactattCACATTtcggttttatgttttttttgtgtgtttttttttaaataatatccaCAGGTGATTCTCGGAGGAGGACGGGTCGTCCTCGTGCCCGTCACCAATGCCCTTACTTTTATTGGCTCAGATGCCTCTCACATTTCACCACTCCGATATACGCATTCTCAATAACGTGTGCAAAAAAACCCCAGTGCTTCTGCTATTCAAAAATGTATCATTAGCATATTCATTAGCGTATACAGTCTGTTGGTAACTGAACAGGGTTATTTGGCTCTGAAATCAGTTTTCGTTCCTTTTAAATAGAAAGAAGGAGTAGAATTCACAGCTCTATTTTTAAGATAGACAGTTCCCTTTCTACAGTATGTAACCAACAGTCAATGGACATTTGGCTAAGCAGTTCTTACTGCAACATAAAAGCTATGTTTACATTGGATTTTTATCAAAATCTGACTTCAGCCCTGTTTATATCTGGTATCTTATCTGGTATCTTGATTAAGTCCTGCTAAAATTTTAGCCACACGCATTTACACTTGGTAATCAAATGCAtgccatttatttattgagcaaAATGTCCCAAATATCGCATACCTGTAAGTGGCGAAAGTATGTAAACAATTCAGACCAGCAAATAATTTAGTTATTAATAATGAGGAGgagcttaaaagaaaaaaatcagactTACAAAATCTACAATCTACAGTCAGTCCGATTGTGCAGGAATGGTGGAAATTCAACACAAATGGAACCcaaggtaacttctaagcaactaaaGGCCCAATTTCTTTCACTGGATAATGTTAATCTTGGACGTTTGGCTAGGTGACAAGCACTGATGGCAACTGGAACAGTGTTTAGTGGACAAACgagaacaaaatatataattttggtCAAGATCAAGTGAGAAGCGATGTTTCAGAGTTTGGTGAAAGGAATAAACTGAATTCTAACATAAAAACCTTATCttatctgtaaaacatggtggtgggagtatcATGGTTGGTGCatctcataaaatttaaatatcattgaactttaattgctttatttaagtaaaagtaaaaagtaaaagt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU144108 True 3045 lncRNA 0.40 2 28108113 28111177

Neighbor

gene id symbol gene type direction distance location
LOC111193463 NA coding upstream 108261 27993999 ~ 27999852 (+)
LOC103043862 mx1 coding upstream 202468 27890718 ~ 27905645 (+)
LOC103047315 LOC108440455 coding upstream 300029 27802084 ~ 27808084 (+)
arglu1 NA coding upstream 339846 27759212 ~ 27768267 (+)
LOC111193461 cpo,LOC108258336 coding upstream 350016 27745088 ~ 27758097 (+)
LOC111193464 NA coding downstream 578378 28689555 ~ 28692305 (+)
LOC111193465 NA coding downstream 581667 28692844 ~ 28697096 (+)
LOC111193466 NA coding downstream 590835 28702012 ~ 28702921 (+)
LOC111193571 NA coding downstream 674787 28785964 ~ 28791991 (+)
LOC111193468 NA coding downstream 700647 28811824 ~ 28815508 (+)
G106651 NA non-coding upstream 132921 27937210 ~ 27975192 (+)
G106650 NA non-coding upstream 171208 27926260 ~ 27936905 (+)
G106642 NA non-coding upstream 189917 27915547 ~ 27918196 (+)
G106648 NA non-coding upstream 193852 27912306 ~ 27914261 (+)
G106646 NA non-coding upstream 200902 27906956 ~ 27907211 (+)
G106675 NA non-coding downstream 1300 28112477 ~ 28132272 (+)
G106710 NA non-coding downstream 188411 28299588 ~ 28300251 (+)
G106718 NA non-coding downstream 274301 28385478 ~ 28386442 (+)
G106745 NA non-coding downstream 467034 28578211 ~ 28578489 (+)
G106754 NA non-coding downstream 512794 28623971 ~ 28624198 (+)
G106673 NA other upstream 41130 28066352 ~ 28066983 (+)
G106661 lancl1 other upstream 86066 28014516 ~ 28022047 (+)
LOC103037236 NA other upstream 1936312 26154417 ~ 26171801 (+)
LOC111193565 NA other upstream 2537292 25458815 ~ 25570821 (+)
LOC111193563 NA other upstream 2738674 25361744 ~ 25369439 (+)
LOC103027743 NA other downstream 591890 28703067 ~ 28724026 (+)
LOC111193573 NA other downstream 1037888 29149065 ~ 29159680 (+)
G107117 NA other downstream 1669149 29780326 ~ 29780927 (+)

Expression


Co-expression Network