G106857 (LOC105899807)


Basic Information

Item Value
gene id G106857
gene name LOC105899807
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 29118496 ~ 29118746 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU144405
TCCGCTGTGCTCGAGAGGGCTCTGATGGTTTGGCGCTGAGTATGGCCTCGAATTCCCAGTTCCCCAAGAAGCCTGGTAGTCGTTTTTCCCACGAAGCCTCTGCAGCCAACTTCCACTGGACAAACCTTGGCTTTCCAGCCACGTTGCTCAGAATCAGCTGCCAGTTCAGCGTACTTAAGGCTCTTTCTTTCGTAGGCCTCCTCAACAGAATCCTCCCAGGGCACAGTAAGCTCAATAATGTAAACCTTACG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU144405 True 251 lncRNA 0.53 1 29118496 29118746

Neighbor

gene id symbol gene type direction distance location
LOC111193570 NA coding upstream 253271 28841179 ~ 28865225 (+)
LOC111193468 NA coding upstream 302988 28811824 ~ 28815508 (+)
LOC111193571 NA coding upstream 326505 28785964 ~ 28791991 (+)
LOC111193466 NA coding upstream 415575 28702012 ~ 28702921 (+)
LOC111193465 NA coding upstream 421400 28692844 ~ 28697096 (+)
LOC111193469 NA coding downstream 7127 29125873 ~ 29127641 (+)
LOC103024513 LOC107555266,LOC106574727,LOC106575573,LOC108429863,LOC107568777,LOC107709315,LOC107718016,LOC105889574,LOC100333907 coding downstream 89805 29208551 ~ 29241597 (+)
LOC103025657 runx1,LOC108429862,LOC107571884 coding downstream 298476 29417222 ~ 29519834 (+)
donson LOC107555241 coding downstream 419591 29538337 ~ 29558043 (+)
LOC103025432 NA coding downstream 444450 29563196 ~ 29588122 (+)
G106856 NA non-coding upstream 5159 29112320 ~ 29113337 (+)
G106855 NA non-coding upstream 25056 29079400 ~ 29093440 (+)
G106821 NA non-coding upstream 45044 29064118 ~ 29073452 (+)
G106819 NA non-coding upstream 59591 29052531 ~ 29058905 (+)
G106822 NA non-coding upstream 66043 29050435 ~ 29052453 (+)
G106859 NA non-coding downstream 17229 29135975 ~ 29136449 (+)
G106954 NA non-coding downstream 203799 29322545 ~ 29323347 (+)
G106992 NA non-coding downstream 247940 29366686 ~ 29367170 (+)
G106993 NA non-coding downstream 248620 29367366 ~ 29367681 (+)
G107012 NA non-coding downstream 285140 29403886 ~ 29404268 (+)
LOC103027743 NA other upstream 394470 28703067 ~ 28724026 (+)
G106673 NA other upstream 1051513 28066352 ~ 28066983 (+)
G106661 lancl1 other upstream 1096449 28014516 ~ 28022047 (+)
LOC103037236 NA other upstream 2946695 26154417 ~ 26171801 (+)
LOC111193565 NA other upstream 3547675 25458815 ~ 25570821 (+)
LOC111193573 NA other downstream 30319 29149065 ~ 29159680 (+)
G107117 NA other downstream 661580 29780326 ~ 29780927 (+)

Expression


Co-expression Network