G106954


Basic Information

Item Value
gene id G106954
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 29322545 ~ 29323347 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU144537
CCCATTTAAACAAATTACCATTCACCTtcactttaaaggagaactcccaTGTGAAATGGACATCAGATGTAGTGAAGTAATTACAAGTACTTAGCTTTGTTGAATTACCAACCAACGTTTGCAGACAGCATTCCAGAATTCAGAACTTTTTTCAAGCTTTTCTTTTGCCACCGCTAAcaagctcaaaatagctccacacttcattggtagaattcagaGAGCCTTGGCAtctaaaatgaggcattaagtAATTTGAAAGTGCACAAGAGGTTTATTAAAACAGACTGTTTACGTCGCGTAGCACTAAGCTAGTTCTCCAGGTACCGCCATCTTAAAGTTAAGTCACGGCAAGTCGCCAGTCGAGCACGAATGGTAAAACATTTTGAactatgtttatttgttattggaACTTTTCCATCTCATATCGCCAGTaaccagatattttcagcagcagctggaattcatgcatttccactgaattaattttgAAAATGGTTCCCCATCCTACCTATTCATTCATGCTCGTGACTCGACTTGCTGTGAATTAACTTTAAGATGGCGGTGTCTGAAGAATTAGCTCAGTGCTATGCGATGTAATacacttcttgtgcactttcaaagtttaGTACTCgtaatcatgtttcactacacccaaagtccattttacaccggagttctcctttaactagTGAAAGCAGGatgcaacaaataaaaatggcTTACAATCATTTGTTTAATGTAAAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU144537 True 745 lncRNA 0.38 2 29322545 29323347

Neighbor

gene id symbol gene type direction distance location
LOC103024513 LOC107555266,LOC106574727,LOC106575573,LOC108429863,LOC107568777,LOC107709315,LOC107718016,LOC105889574,LOC100333907 coding upstream 80948 29208551 ~ 29241597 (+)
LOC111193469 NA coding upstream 194904 29125873 ~ 29127641 (+)
LOC111193570 NA coding upstream 457320 28841179 ~ 28865225 (+)
LOC111193468 NA coding upstream 507037 28811824 ~ 28815508 (+)
LOC111193571 NA coding upstream 530554 28785964 ~ 28791991 (+)
LOC103025657 runx1,LOC108429862,LOC107571884 coding downstream 93875 29417222 ~ 29519834 (+)
donson LOC107555241 coding downstream 214990 29538337 ~ 29558043 (+)
LOC103025432 NA coding downstream 239849 29563196 ~ 29588122 (+)
LOC111193470 NA coding downstream 333190 29656537 ~ 29658422 (+)
ncam2 ncam2,LOC107721821,LOC107698913,LOC107751079 coding downstream 520753 29844100 ~ 30451601 (+)
G106859 NA non-coding upstream 186096 29135975 ~ 29136449 (+)
G106857 LOC105899807 non-coding upstream 203799 29118496 ~ 29118746 (+)
G106856 NA non-coding upstream 209208 29112320 ~ 29113337 (+)
G106855 NA non-coding upstream 229105 29079400 ~ 29093440 (+)
G106821 NA non-coding upstream 249093 29064118 ~ 29073452 (+)
G106992 NA non-coding downstream 43339 29366686 ~ 29367170 (+)
G106993 NA non-coding downstream 44019 29367366 ~ 29367681 (+)
G107012 NA non-coding downstream 80539 29403886 ~ 29404268 (+)
G107014 NA non-coding downstream 82641 29405988 ~ 29406309 (+)
G107044 NA non-coding downstream 202308 29525655 ~ 29575347 (+)
LOC111193573 NA other upstream 162865 29149065 ~ 29159680 (+)
LOC103027743 NA other upstream 598519 28703067 ~ 28724026 (+)
G106673 NA other upstream 1255562 28066352 ~ 28066983 (+)
G106661 lancl1 other upstream 1300498 28014516 ~ 28022047 (+)
LOC103037236 NA other upstream 3150744 26154417 ~ 26171801 (+)
G107117 NA other downstream 456979 29780326 ~ 29780927 (+)

Expression


Co-expression Network