LOC103025432


Basic Information

Item Value
gene id LOC103025432
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 29563196 ~ 29588122 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015602721.2
AGACCCTGCGCTCTGCTCCCCCAGTGCGTCTGGAGGTGTGGCCTCCTGCAGAACGTGGAGGAATCTCTATCCCTGTTTAAACACAGCAGTTATTGACTGTCTCTGATTACGCTGACGTCGACCGTTGCAATATGAAAGATTGTGCCGTGATTTTGGCATCATTTCTAACAGCATGTCTGGCTGTGGAGGTGCAGTTTGGGGGTCGGGTCTCGCTGCCCTGTAACAGCTCAGCGTACGGCCGGGGGGAACTGGACGTGCAGTGGGAGGCTATGGGAAAAGACGTTGCCTTCTTCCAGGATGGACAGCTCGTATCTGGATCCGGCTACGAGGGGCGACTGGAGCTCCAGATATCGCAGGCTCTGGAGGGGGACTTCTCTCTGACTCTGAATCATGCGGTGATGAGCGACTCTGACATGTACGAGTGTCTGTGGCAGGGGAAGAGGAGCATCTCCACGGTGATGCTGAAGGTCTTGCAGTCTACATGGATGGAGAAAGCTTTTAACGTCACTGAAATGACCAGTTTAAGCAGCAGTACAGAGACTACTGAATTAACTACCTCTACTAATGGAGACGCCACTACAAAGCAGGACACTGCTACAGCATCTACGCCATGGATGGAGGAAGCTTTTAACGTCACTGAAATGACCAGTTTAAGCAGCAGTACAGAGACTACTGAATTAACTACCTCTACTAATGGAGACGCAACTACAGCGCAGGACACTGCTACAGTGACCTCAGAAATGCTGCCACAATCTAACACAACTATTGACTTCACTTGGTTTATTGATGATGCCAGTGAAGGCGGCACTACGATACAGGATACAACTGAAGAGATTCTTCCAGAGCCAAGCCCAACTGCTGACGTTTTCGGGTTCATTGTCGATAACAGTGCTGACAGTACTACAATACAGGATACTGAAGGAGTGATTTCACAGATACATCCACAGCCAAGTCCAACTGCTCACCTTATTGGGTTCATTGCTGATAACAGTGCTGACAGCACCACAGTAGAAGATACTGTGGAAGagACGATACCACACCCAAGCAGGACTAAAGACTTTGCTGGGTTAGTTGCAGATTCCAGGGATGACATCAACGGAGGTCAGGATTTACTGGAAGGTGAAGGAGAATCGTTTGAGTTGGTTCTGGATGAGAAGGTGCCGTGGGTTCGTATCGGGATCATCAGCGGAGTTCTGCTGGTCACTGCAGCGCTCATGGGAACACTACTGGCACTGGGGAAACTTTGACGAGTAAAGAGGATTgagataaatattaaaaaaaatttaaatcagtgttatttgtacagtatattcaaaTATTGTCTTGCATTAAAAATAGTGATTAGTAATTTATGTAGAATAAAGGGTGAttgtgaggttttttttttcatattttgccattaaacaaacaaacagctaaATAAAACTATCCatttctgtaataataaagatgtTAAAGCAGAAATGCTTTCTATCCAGCAGTAGTATTCCTAAGTTGGAACGAGACAGAATTTCATAATTAATGGTATCAGAGTCCTGGCACAACCATCCCTgcaatatcatatatatatatatatata
>XM_022674967.1
AGACCCTGCGCTCTGCTCCCCCAGTGCGTCTGGAGGTGTGGCCTCCTGCAGAACGTGGAGGAATCTCTATCCCTGTTTAAACACAGCAGTTATTGACTGTCTCTGATTACGCTGACGTCGACCGTTGCAATATGAAAGATTGTGCCGTGATTTTGGCATCATTTCTAACAGCATGTCTGGCTGTGGAGGTGCAGTTTGGGGGTCGGGTCTCGCTGCCCTGTAACAGCTCAGCGTACGGCCGGGGGGAACTGGACGTGCAGTGGGAGGCTATGGGAAAAGACGTTGCCTTCTTCCAGGATGGACAGCTCGTATCTGGATCCGGCTACGAGGGGCGACTGGAGCTCCAGATATCGCAGGCTCTGGAGGGGGACTTCTCTCTGACTCTGAATCATGCGGTGATGAGCGACTCTGACATGTACGAGTGTCTGTGGCAGGGGAAGAGGAGCATCTCCACGGTGATGCTGAAGGTCTTGCCTCCATTGTTTCCTGAGCTACACACCATGGTACGAGAGGGGGAAGATGTCACACTGCCCTGCTACGCTAACATACCCAAAAATAAACCTCTGGAGAAAATGTTCATCCAGTGGTTGAAAGATGATAAAGAAGTGTTGCTGCTCAGCTCCGGAGAGATCACCACGAAGTCCATCAACGGGCACCTGGAGTTACCACCCACAGAGGACCTAAAGCAGGGCATCCTGTCCCTGAATATTAACGCAGTGACAGCGTCGGACCAGGGCGTCTACAGATGCCTCTACAGAGCTGTTGATTTCGAAACTCCAAAGAGTGGAGATCCTGAAACCTACACCCTCCGAGTTTTAGAGTCTACATGGATGGAGAAAGCTTTTAACGTCACTGAAATGACCAGTTTAAGCAGCAGTACAGAGACTACTGAATTAACTACCTCTACTAATGGAGACGCCACTACAAAGCAGGACACTGCTACAGCATCTACGCCATGGATGGAGGAAGCTTTTAACGTCACTGAAATGACCAGTTTAAGCAGCAGTACAGAGACTACTGAATTAACTACCTCTACTAATGGAGACGCAACTACAGCGCAGGACACTGCTACAGTGACCTCAGAAATGCTGCCACAATCTAACACAACTATTGACTTCACTTGGTTTATTGATGATGCCAGTGAAGGCGGCACTACGATACAGGATACAACTGAAGAGATTCTTCCAGAGCCAAGCCCAACTGCTGACGTTTTCGGGTTCATTGTCGATAACAGTGCTGACAGTACTACAATACAGGATACTGAAGGAGTGATTTCACAGATACATCCACAGCCAAGTCCAACTGCTCACCTTATTGGGTTCATTGCTGATAACAGTGCTGACAGCACCACAGTAGAAGATACTGTGGAAGagACGATACCACACCCAAGCAGGACTAAAGACTTTGCTGGGTTAGTTGCAGATTCCAGGGATGACATCAACGGAGGTCAGGATTTACTGGAAGGTGAAGGAGAATCGTTTGAGTTGGTTCTGGATGAGAAGGTGCCGTGGGTTCGTATCGGGATCATCAGCGGAGTTCTGCTGGTCACTGCAGCGCTCATGGGAACACTACTGGCACTGGGGAAACTTTGACGAGTAAAGAGGATTgagataaatattaaaaaaaatttaaatcagtgttatttgtacagtatattcaaaTATTGTCTTGCATTAAAAATAGTGATTAGTAATTTATGTAGAATAAAGGGTGAttgtgaggttttttttttcatattttgccattaaacaaacaaacagctaaATAAAACTATCCatttctgtaataataaagatgtTAAAGCAGAAATGCTTTCTATCCAGCAGTAGTATTCCTAAGTTGGAACGAGACAGAATTTCATAATTAATGGTATCAGAGTCCTGGCACAACCATCCCTgcaatatcatatatatatatatatata

Function

GO:

id name namespace
GO:0003779 actin binding molecular_function
GO:0015085 calcium ion transmembrane transporter activity molecular_function
GO:0008092 cytoskeletal protein binding molecular_function

KEGG:

id description
ko05410 Hypertrophic cardiomyopathy
ko05414 Dilated cardiomyopathy

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015602721.2 False 1579 mRNA 0.45 10 29563196 29588122
XM_022674967.1 True 1924 mRNA 0.46 11 29563196 29588122

Neighbor

gene id symbol gene type direction distance location
donson LOC107555241 coding upstream 5153 29538337 ~ 29558043 (+)
LOC103025657 runx1,LOC108429862,LOC107571884 coding upstream 43362 29417222 ~ 29519834 (+)
LOC103024513 LOC107555266,LOC106574727,LOC106575573,LOC108429863,LOC107568777,LOC107709315,LOC107718016,LOC105889574,LOC100333907 coding upstream 321599 29208551 ~ 29241597 (+)
LOC111193469 NA coding upstream 435555 29125873 ~ 29127641 (+)
LOC111193570 NA coding upstream 697971 28841179 ~ 28865225 (+)
LOC111193470 NA coding downstream 68415 29656537 ~ 29658422 (+)
ncam2 ncam2,LOC107721821,LOC107698913,LOC107751079 coding downstream 255978 29844100 ~ 30451601 (+)
LOC111193471 NA coding downstream 952139 30540261 ~ 30547361 (+)
LOC111193577 LOC108429857,LOC108258902 coding downstream 1073877 30661999 ~ 30668744 (+)
gart gart coding downstream 1084030 30672152 ~ 30711252 (+)
G107014 NA non-coding upstream 156887 29405988 ~ 29406309 (+)
G107012 NA non-coding upstream 158928 29403886 ~ 29404268 (+)
G106993 NA non-coding upstream 195515 29367366 ~ 29367681 (+)
G106992 NA non-coding upstream 196026 29366686 ~ 29367170 (+)
G106954 NA non-coding upstream 239849 29322545 ~ 29323347 (+)
G107056 NA non-coding downstream 6916 29595038 ~ 29597014 (+)
G107057 NA non-coding downstream 9136 29597258 ~ 29600584 (+)
G107064 NA non-coding downstream 27156 29615278 ~ 29621512 (+)
G107074 NA non-coding downstream 67789 29655911 ~ 29656234 (+)
G107075 NA non-coding downstream 85974 29674096 ~ 29674334 (+)
LOC111193573 NA other upstream 403516 29149065 ~ 29159680 (+)
LOC103027743 NA other upstream 839170 28703067 ~ 28724026 (+)
G106673 NA other upstream 1496213 28066352 ~ 28066983 (+)
G106661 lancl1 other upstream 1541149 28014516 ~ 28022047 (+)
LOC103037236 NA other upstream 3391395 26154417 ~ 26171801 (+)
G107117 NA other downstream 192204 29780326 ~ 29780927 (+)

Expression


Co-expression Network