LOC111193461 (cpo,LOC108258336)


Basic Information

Item Value
gene id LOC111193461
gene name cpo,LOC108258336
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 27745088 ~ 27758097 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022674367.1
ATTCAGCGGCTGCAGTAAAAACCCTGATTATAAAAGCCGACACTCAGGAACTTCTCTCAGGAGCTTCTCCCAGAACAGGAACATCTAAACCACCGACCATGCTGAGATCAGTCTTACCCGCACTGCTGCTACTGACCCTGCAAACCCACAACAGGGCAGTGGAAGGCCTGGATCTACGAGCTTATGACTACACCAAGTACCACACCATGGACGAGATCTCAGCCTGGATGGTGCAGATGGAGACGGATCACCCTGAGGTGGTGTCCAGTATGATATATGGAACAACATACGAGAACAGGAGCATCAGCCTGCTGAAGATCGGTCTGAACAGCACCAGTCCAAAGAAGGCGATATGGATGGACTGTGGGATCCACGCCAGAGAATGGATTGCTCCAGCTTTCTGCCAGTATTTCGTAAAGGAGATCCTGGCCTCCTACAAAACAGACACGAAGATGAATGAAATGTTTAAGAACCTGGACTTCTACATCACTCCTGTTCTCAACATGGACGGATACATCTACTCCTGGGTGGACAACACGACTCGTCTGTGGAGGAAGTCCCGGTCTCCGGGTTCTGACGGCTGCAGCTGCTACGGCACTGATCTGAACCGGAACTTCTACGCTAACTGGGGAAATGGAGGTGAGTGtcatcggcctATGGAGGTGGGTCTGGCTGCAGCGAAGGCCATTAAAGCCGTTCATGGGAAGGAATACGTAGTGGGGACCTCGCCTGACGTGCTGTATGCGAATTCGGGTTCTTCGCGGGATTTCGCTCGTCTGATCGGGATCCCGTTCTCCTTCACCTTCGAGCTCAGAGACAAGGGCGAGTTCGGCTTCAAACTGCCTGAAGATCAGATCCAGCCCACCTGTGAGGAGGCTTACCAGGGGGCGCTGTCCATCATCACCACCGTCCACGACAAGACCTTTACCAGCGCCGCGTTCACCATAACAGCCACACTGTGGACCACGATGACCGCCGCCTGCCTCTCTACCGCCACCTGGGTGTGAGCTGTAGACAGTGGGTCTTTCACCAGGAGGGACACACGTTTTATCACAAATACATATGAGAGAGAACTGACCTAACGATCAAAATGGAGTTTGTCTGCGATTTGAAagacaaaagtaaaaaacaaaaagttctaAAATTGTGTAATATGAACCTGTCTTAAAGATCTCAGCTAATTAtgagctttttttattattttttttaaataatgttttataaatatttattaaaacccaGTCGTTCCATTGAAGCTAAAGGGTTAAACACTCCATATTCATGGTGTAAAGAAAGCAATGTACAAATTTGATCTCAGATCAGGCCTTCAttcgtttatttaatttaattcagtgtaTGACTGACACTGATGACTTTGTAAACAAAagtatttgaatgttttttgctcaaattactaaaaataaatctgCTTTTACCTACA

Function

symbol description
cpo Enables metallocarboxypeptidase activity. Predicted to be involved in proteolysis. Is anchored component of plasma membrane. Is expressed in intestinal epithelium. Orthologous to human CPO (carboxypeptidase O).

NR:

description
PREDICTED: carboxypeptidase O-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022674367.1 True 1441 mRNA 0.47 9 27745088 27758097

Neighbor

gene id symbol gene type direction distance location
LOC103046391 NA coding upstream 5990 27729513 ~ 27739098 (+)
atic atic,pur9,LOC107556291,LOC107674004,LOC107750210 coding upstream 140857 27588049 ~ 27604231 (+)
LOC111193487 NA coding upstream 1101878 26638967 ~ 26643210 (+)
slitrk1 slitrk1,LOC107756981,LOC107570247,LOC107744763,LOC107556534 coding upstream 1229850 26511121 ~ 26515238 (+)
LOC111193566 NA coding upstream 1490211 26250173 ~ 26254877 (+)
arglu1 NA coding downstream 1115 27759212 ~ 27768267 (+)
LOC103047315 LOC108440455 coding downstream 43987 27802084 ~ 27808084 (+)
LOC103043862 mx1 coding downstream 132621 27890718 ~ 27905645 (+)
LOC111193463 NA coding downstream 235902 27993999 ~ 27999852 (+)
LOC111193464 NA coding downstream 931458 28689555 ~ 28692305 (+)
G106572 NA non-coding upstream 110878 27630943 ~ 27634210 (+)
G106562 NA non-coding upstream 120387 27583377 ~ 27624701 (+)
G106564 NA non-coding upstream 134474 27609381 ~ 27610614 (+)
G106557 NA non-coding upstream 173442 27571336 ~ 27571646 (+)
G106555 NA non-coding upstream 174897 27569987 ~ 27570191 (+)
G106636 NA non-coding downstream 68490 27826587 ~ 27826848 (+)
G106644 NA non-coding downstream 147688 27905785 ~ 27906285 (+)
G106646 NA non-coding downstream 148859 27906956 ~ 27907211 (+)
G106648 NA non-coding downstream 154209 27912306 ~ 27914261 (+)
G106642 NA non-coding downstream 157450 27915547 ~ 27918196 (+)
LOC103037236 NA other upstream 1573287 26154417 ~ 26171801 (+)
LOC111193565 NA other upstream 2174267 25458815 ~ 25570821 (+)
LOC111193563 NA other upstream 2375649 25361744 ~ 25369439 (+)
G106146 NA other upstream 3331990 24411208 ~ 24413098 (+)
G106036 NA other upstream 3755496 23987207 ~ 23989592 (+)
G106661 lancl1 other downstream 256419 28014516 ~ 28022047 (+)
G106673 NA other downstream 308255 28066352 ~ 28066983 (+)
LOC103027743 NA other downstream 944970 28703067 ~ 28724026 (+)
LOC111193573 NA other downstream 1390968 29149065 ~ 29159680 (+)
G107117 NA other downstream 2022229 29780326 ~ 29780927 (+)

Expression


Co-expression Network