LOC111193468


Basic Information

Item Value
gene id LOC111193468
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 28811824 ~ 28815508 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022674377.1
GAAACTGATACTATTTCCTCCATTTGTCAGAGAAGAGCTTTAGAAGAAAAATGAAGTCCAGCAGCAGTGCATCCCTCTTCCTCCTCTGCGCTCTGATTATTAACAACTTTACAGACTCCAGTGCATGTGACTTCACTGTGGCAGTAGGGAGCCCTGTTACCATTAACCTTGGCCTTGATCAAACTGATGAGCTTTTATGGAGACACAACTCTCAGAGAGTGTTTAAAGGAAATGTTAGCGCATTaccaacaaaactaaacaacGTGAAGCTGACCAGTGATGGGTCCCTTATAATcagttctgtaaaaaaagaagataatgGCGACCATGAGTTTGAAGCTTTCCTTTCGAATGGCACatctaaagcaaaaaaaacaatcacactGTGTGTTCATgaaaagcCACCTAAGCCAACGGTGAACGCCACATGTATAGACGGGACTCCTTACATTACCTGTGAAGTTAAAGACAAAACCGGACGGACCTTCAGTTGGtataaaaatgggaaaaaaattgatGGAAATACTGCAAGTCTAAGAAACATTGAGAGAGATCAGGACTATGAGTGTGCTGTGGAAAAACCCATTCCAAGTGAAAAGAGTAGTAATAAAGTCAAACCAGCCAATTGTAGTTTGCCGGAAAAAGGAGAAGACGATATCTTTTATAGCAGGTGGAGGGAGTCTGGCGCTGGTGCTGATGATCGTGCTGGTGATACGTGTCTGTCTGAGCAGCAAACGACGAGAGAAACGCCTACAATGTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022674377.1 True 761 mRNA 0.42 4 28811824 28815508

Neighbor

gene id symbol gene type direction distance location
LOC111193571 NA coding upstream 19833 28785964 ~ 28791991 (+)
LOC111193466 NA coding upstream 108903 28702012 ~ 28702921 (+)
LOC111193465 NA coding upstream 114728 28692844 ~ 28697096 (+)
LOC111193464 NA coding upstream 119519 28689555 ~ 28692305 (+)
LOC111193463 NA coding upstream 811972 27993999 ~ 27999852 (+)
LOC111193570 NA coding downstream 25671 28841179 ~ 28865225 (+)
LOC111193469 NA coding downstream 310365 29125873 ~ 29127641 (+)
LOC103024513 LOC107555266,LOC106574727,LOC106575573,LOC108429863,LOC107568777,LOC107709315,LOC107718016,LOC105889574,LOC100333907 coding downstream 393043 29208551 ~ 29241597 (+)
LOC103025657 runx1,LOC108429862,LOC107571884 coding downstream 601714 29417222 ~ 29519834 (+)
donson LOC107555241 coding downstream 722829 29538337 ~ 29558043 (+)
G106800 NA non-coding upstream 33344 28778182 ~ 28778480 (+)
G106799 NA non-coding upstream 34787 28776546 ~ 28777037 (+)
G106795 NA non-coding upstream 76853 28734295 ~ 28734971 (+)
G106792 NA non-coding upstream 84104 28727286 ~ 28727720 (+)
G106791 NA non-coding upstream 84730 28726720 ~ 28727094 (+)
G106807 NA non-coding downstream 13791 28829299 ~ 28850608 (+)
G106817 LOC108258578,LOC108429866,LOC108258576,LOC107568776,LOC107653679,LOC107717913 non-coding downstream 138078 28953586 ~ 29063678 (+)
G106838 atp1a1a.4,LOC108429867,LOC108258577,LOC108429865 non-coding downstream 157224 28972732 ~ 28974394 (+)
G106822 NA non-coding downstream 234927 29050435 ~ 29052453 (+)
G106819 NA non-coding downstream 237023 29052531 ~ 29058905 (+)
LOC103027743 NA other upstream 87798 28703067 ~ 28724026 (+)
G106673 NA other upstream 744841 28066352 ~ 28066983 (+)
G106661 lancl1 other upstream 789777 28014516 ~ 28022047 (+)
LOC103037236 NA other upstream 2640023 26154417 ~ 26171801 (+)
LOC111193565 NA other upstream 3241003 25458815 ~ 25570821 (+)
LOC111193573 NA other downstream 333557 29149065 ~ 29159680 (+)
G107117 NA other downstream 964818 29780326 ~ 29780927 (+)

Expression


Co-expression Network