LOC111193571


Basic Information

Item Value
gene id LOC111193571
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 28785964 ~ 28791991 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022674952.1
TTTTCAGGCATTAAGCAAAACACCTCAGTGCATTAACTCACACCTTCCAGTTCAAAAACAGGAAACTGATACTATTTCCTCCATTTGTCAGAGAAGAGCTTTAGAAGAAAAATGAAGTCCAGAAGCAGTGCAtcactcttcctcctctgcGCTCTGATTATTAACAACTATACAGACTCCAGTGCATGTGACTTCACTGTGGCAGTAGGGAGCCCTGTTACCATTAAGCTTGGCCTTGATCAAACTGATGAGCTTCAATGGAAACACGACTCTAAGAGAGTGTTTAAAGGAGAGGTTAAAACATTaccaacaaaactaaacaacGTGAAGCTGACCAGTGATGGATCCCTTGTAAtcatttctgtaaaaaaagaagataatgGCGACCATGAGTTTGAAGTTTTCCTTTCGAATGGCAGatctaaagcaaaaaaaacaatcacactGTGTGTTCATgaaaagcCACCTAAGCCAACGGTGAACGCCACATGTATAGATGGGACTCCTTACATTAAATGTGAAGTTAAAGACCAAACCGGACGGACCTTCAGTTGGtataaaaatgggaaaaaaattgatGGAAATTCTGCAAGTCTAAGAAACATTGAGAGAGATAAGGAATATGAGTGTGCTGTGGAAAAACCCATTCCAAGTGAAAAGAGTAATAAATTCAGACCAGCCAAATGTACAAGTTCGGAGAACGGAGAAGAAGACGATATGCTTTGGGGTTTTGAGCGCTGGATAATGATATCTTTTATAGCAGGAGGAGGGAGTctggtgctggtgctgatgATCGTGCTGGTGATATGTGCCTGTCAAAGCTGCAAACGACGAAAGAAACGCCTACAAGATAAAGAGGAGTTACCCCGCTTTCCAGGATCTGCTAAACCTCCCCAGACTCATCAAACATCAGAGAACACTGCAGGAAATCAGCCAGCTTCCTCCCCAACAACACCCTGAAATCTCACACTATACATAAGATACATCCTGGATCTAAGAAGAGTCCTCTGCCTGCACCCGATAGataatgatgaagatgatgatgatgatgatgatgatgatgatgatgaacaaCCTACACCATTATTCCAACCCAGGAAAAATGCTCCACACAGCAAAAAGAAttaagcagaggtggaaagtaatgaattacatttactcaagttactgtaattgaaaagattttatgagtaatttgta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022674952.1 True 1200 mRNA 0.41 5 28785964 28791991

Neighbor

gene id symbol gene type direction distance location
LOC111193466 NA coding upstream 83043 28702012 ~ 28702921 (+)
LOC111193465 NA coding upstream 88868 28692844 ~ 28697096 (+)
LOC111193464 NA coding upstream 93659 28689555 ~ 28692305 (+)
LOC111193463 NA coding upstream 786112 27993999 ~ 27999852 (+)
LOC103043862 mx1 coding upstream 880319 27890718 ~ 27905645 (+)
LOC111193468 NA coding downstream 19833 28811824 ~ 28815508 (+)
LOC111193570 NA coding downstream 49188 28841179 ~ 28865225 (+)
LOC111193469 NA coding downstream 333882 29125873 ~ 29127641 (+)
LOC103024513 LOC107555266,LOC106574727,LOC106575573,LOC108429863,LOC107568777,LOC107709315,LOC107718016,LOC105889574,LOC100333907 coding downstream 416560 29208551 ~ 29241597 (+)
LOC103025657 runx1,LOC108429862,LOC107571884 coding downstream 625231 29417222 ~ 29519834 (+)
G106800 NA non-coding upstream 7484 28778182 ~ 28778480 (+)
G106799 NA non-coding upstream 8927 28776546 ~ 28777037 (+)
G106795 NA non-coding upstream 50993 28734295 ~ 28734971 (+)
G106792 NA non-coding upstream 58244 28727286 ~ 28727720 (+)
G106791 NA non-coding upstream 58870 28726720 ~ 28727094 (+)
G106803 NA non-coding downstream 17344 28809335 ~ 28865069 (+)
LOC111193572 NA non-coding downstream 21414 28813405 ~ 28814051 (+)
G106807 NA non-coding downstream 37308 28829299 ~ 28850608 (+)
G106817 LOC108258578,LOC108429866,LOC108258576,LOC107568776,LOC107653679,LOC107717913 non-coding downstream 161595 28953586 ~ 29063678 (+)
G106838 atp1a1a.4,LOC108429867,LOC108258577,LOC108429865 non-coding downstream 180741 28972732 ~ 28974394 (+)
LOC103027743 NA other upstream 61938 28703067 ~ 28724026 (+)
G106673 NA other upstream 718981 28066352 ~ 28066983 (+)
G106661 lancl1 other upstream 763917 28014516 ~ 28022047 (+)
LOC103037236 NA other upstream 2614163 26154417 ~ 26171801 (+)
LOC111193565 NA other upstream 3215143 25458815 ~ 25570821 (+)
LOC111193573 NA other downstream 357074 29149065 ~ 29159680 (+)
G107117 NA other downstream 988335 29780326 ~ 29780927 (+)

Expression


Co-expression Network